Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 N 1.46505 * 109.47446 * 119.99452 * 2 1 3 5 5 C 1.34773 * 119.99598 * 84.99918 * 4 2 1 6 6 O 1.21283 * 120.00221 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00045 * 180.02562 * 5 4 2 8 8 O 1.42906 * 109.47121 * 180.02562 * 7 5 4 9 9 C 1.35900 * 116.99733 * 180.02562 * 8 7 5 10 10 C 1.38920 * 119.98239 * 0.02562 * 9 8 7 11 11 C 1.38285 * 120.25785 * 179.97438 * 10 9 8 12 12 C 1.37973 * 120.20934 * 359.78464 * 11 10 9 13 13 C 1.39697 * 119.95430 * 0.44311 * 12 11 10 14 14 C 1.47804 * 120.12412 * 179.80893 * 13 12 11 15 15 N 1.32852 * 120.24516 * 43.84519 * 14 13 12 16 16 C 1.32008 * 120.07810 * 179.97438 * 15 14 13 17 17 C 1.39204 * 120.58717 * 359.96996 * 16 15 14 18 18 N 1.31605 * 120.50301 * 0.02622 * 17 16 15 19 19 C 1.33979 * 119.89613 * 0.02562 * 18 17 16 20 20 C 1.40805 * 120.28087 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99443 * 190.23091 * 20 19 18 22 22 C 1.40168 * 120.00141 * 10.22773 * 20 19 18 23 23 N 1.30682 * 120.00373 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47174 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47185 * 119.99789 * 24 22 20 27 27 H 1.48501 * 109.46870 * 239.99618 * 24 22 20 28 28 C 1.38393 * 119.97770 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.47520 * 60.00092 * 1 2 3 30 30 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47195 * 299.99909 * 1 2 3 32 32 H 1.08995 * 109.47445 * 240.00100 * 2 1 3 33 33 H 1.09002 * 109.47534 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46892 * 299.99868 * 3 2 1 35 35 H 1.09000 * 109.47323 * 59.99938 * 3 2 1 36 36 H 0.96991 * 120.00228 * 265.00763 * 4 2 1 37 37 H 1.08999 * 109.46774 * 60.00555 * 7 5 4 38 38 H 1.08999 * 109.46606 * 300.00356 * 7 5 4 39 39 H 1.07998 * 119.86909 * 359.97438 * 10 9 8 40 40 H 1.07997 * 119.90165 * 180.02562 * 11 10 9 41 41 H 1.08004 * 120.02263 * 180.23461 * 12 11 10 42 42 H 1.08001 * 119.70927 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.74700 * 179.74620 * 17 16 15 44 44 H 0.96998 * 120.00064 * 180.02562 * 23 22 20 45 45 H 1.07997 * 120.10843 * 359.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1471 -2.0321 1.1945 6 8 1.8590 -2.6677 0.2025 7 6 2.6490 -2.7425 2.4252 8 8 2.6977 -4.1490 2.1767 9 6 3.1313 -4.9403 3.1929 10 6 3.5019 -4.3725 4.4054 11 6 3.9435 -5.1724 5.4434 12 6 4.0148 -6.5409 5.2833 13 6 3.6489 -7.1208 4.0662 14 6 3.7279 -8.5861 3.8892 15 7 3.2917 -9.4000 4.8444 16 6 3.3634 -10.7082 4.6826 17 6 3.8935 -11.2495 3.5149 18 7 4.3322 -10.4646 2.5538 19 6 4.2699 -9.1340 2.6976 20 6 4.7363 -8.2867 1.6744 21 1 4.8389 -7.2270 1.8557 22 6 5.0677 -8.8186 0.4205 23 7 4.9432 -10.1008 0.2010 24 14 5.6872 -7.6945 -0.9367 25 1 5.7367 -6.2967 -0.4377 26 1 7.0480 -8.1214 -1.3504 27 1 4.7688 -7.7718 -2.1011 28 6 3.2024 -6.3115 3.0195 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2490 -0.1822 1.9895 37 1 1.9760 -2.5437 3.2593 38 1 3.6480 -2.3824 2.6705 39 1 3.4449 -3.3022 4.5378 40 1 4.2297 -4.7249 6.3837 41 1 4.3565 -7.1631 6.0973 42 1 3.0067 -11.3643 5.4628 43 1 3.9494 -12.3218 3.3985 44 1 5.1728 -10.4689 -0.6665 45 1 2.9134 -6.7542 2.0778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243886806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -32.313400 kcal Electronic energy + Delta-G solvation = -28553.204879 eV Core-core repulsion = 24534.891320 eV Total energy + Delta-G solvation = -4018.313559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48011 -40.97403 -40.24947 -38.18326 -36.93449 -36.05831 -34.19070 -33.17119 -32.95519 -31.31674 -30.28666 -28.84364 -28.10369 -28.03872 -25.13465 -24.05567 -23.10045 -22.99704 -21.86561 -21.48998 -19.63361 -19.17809 -18.25873 -17.88190 -17.46240 -17.25358 -16.98354 -16.65636 -16.47448 -16.15313 -15.81818 -15.65629 -15.13178 -14.99239 -14.76679 -14.58441 -14.42228 -13.93096 -13.84312 -13.50374 -13.36743 -13.30871 -13.20593 -13.07323 -13.05690 -12.62182 -12.39615 -12.31954 -12.09949 -11.98644 -11.91912 -11.87166 -11.61512 -11.52602 -11.08689 -10.94113 -10.20787 -10.10227 -9.49253 -9.29247 -9.01987 -8.48930 -6.66317 0.10716 0.61390 0.76150 1.17408 1.31417 1.43970 1.46821 1.48255 1.58729 2.11108 2.67126 2.70077 2.94368 3.61147 3.73848 3.78019 3.93332 4.00057 4.09733 4.11928 4.15793 4.20057 4.24860 4.30916 4.34336 4.46679 4.62355 4.67070 4.72037 4.75082 4.76751 4.92860 4.94507 5.01374 5.07020 5.16763 5.21214 5.25694 5.32210 5.39056 5.48583 5.56816 5.74957 5.84026 5.94204 6.10315 6.41332 6.42781 6.59033 6.67297 7.18853 7.26750 7.84693 8.19953 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.003047 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.957024 B = 9186.122756 C =10878.466000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.150 4.150 4 N -0.704 5.704 5 C 0.511 3.489 6 O -0.575 6.575 7 C 0.034 3.966 8 O -0.325 6.325 9 C 0.118 3.882 10 C -0.206 4.206 11 C -0.072 4.072 12 C -0.153 4.153 13 C 0.036 3.964 14 C -0.049 4.049 15 N -0.423 5.423 16 C -0.117 4.117 17 C 0.076 3.924 18 N -0.487 5.487 19 C 0.190 3.810 20 C -0.423 4.423 21 H 0.101 0.899 22 C 0.028 3.972 23 N -0.740 5.740 24 Si 0.975 3.025 25 H -0.259 1.259 26 H -0.253 1.253 27 H -0.265 1.265 28 C -0.156 4.156 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.421 0.579 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.116 0.884 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.288 0.712 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 23.922 4.014 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.208 4.208 4 N -0.360 5.360 5 C 0.297 3.703 6 O -0.454 6.454 7 C -0.044 4.044 8 O -0.238 6.238 9 C 0.073 3.927 10 C -0.224 4.224 11 C -0.089 4.089 12 C -0.172 4.172 13 C 0.034 3.966 14 C -0.194 4.194 15 N -0.135 5.135 16 C -0.279 4.279 17 C -0.094 4.094 18 N -0.204 5.204 19 C 0.066 3.934 20 C -0.453 4.453 21 H 0.119 0.881 22 C -0.196 4.196 23 N -0.361 5.361 24 Si 0.794 3.206 25 H -0.182 1.182 26 H -0.176 1.176 27 H -0.190 1.190 28 C -0.176 4.176 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.259 0.741 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.189 0.811 40 H 0.183 0.817 41 H 0.134 0.866 42 H 0.183 0.817 43 H 0.180 0.820 44 H 0.099 0.901 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.999 23.232 2.910 23.605 hybrid contribution 0.167 -0.489 -0.439 0.678 sum -2.832 22.743 2.472 23.052 Atomic orbital electron populations 1.22169 0.94947 1.01155 1.03687 1.21060 0.94492 0.94289 0.87471 1.22019 1.01880 0.92399 1.04454 1.45808 1.66981 1.05081 1.18100 1.20590 0.77395 0.83453 0.88882 1.90760 1.50763 1.67170 1.36688 1.22789 1.05384 0.79411 0.96782 1.86126 1.81807 1.18198 1.37719 1.18809 0.96373 0.89464 0.88013 1.21530 1.06929 1.02000 0.91949 1.21167 0.96439 0.91723 0.99588 1.21271 1.03709 0.96142 0.96120 1.18102 0.95394 0.89579 0.93526 1.20501 1.10671 0.93346 0.94907 1.67756 1.11465 1.05172 1.29107 1.23181 1.12311 0.91639 1.00765 1.24101 0.93295 1.01296 0.90708 1.69463 1.18880 1.04022 1.28063 1.19637 0.91229 0.90280 0.92263 1.20162 1.34087 0.96119 0.94910 0.88127 1.26996 0.93908 0.96758 1.01938 1.70087 1.28419 1.13880 1.23710 0.85246 0.79172 0.79075 0.77070 1.18214 1.17646 1.18990 1.20446 1.05818 0.91440 0.99894 0.90254 0.95235 0.90561 0.92266 0.91663 0.89928 0.89973 0.74060 0.85519 0.85681 0.81065 0.81724 0.86560 0.81665 0.81992 0.90127 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 71.98 0.68 -1.64 16 2 C 0.13 1.90 3.18 44.99 0.14 2.05 16 3 C -0.15 -1.02 9.38 71.98 0.68 -0.35 16 4 N -0.70 -10.00 5.08 -442.54 -2.25 -12.25 16 5 C 0.51 12.46 7.87 87.66 0.69 13.15 16 6 O -0.58 -21.44 16.16 16.00 0.26 -21.18 16 7 C 0.03 0.70 5.22 71.24 0.37 1.07 16 8 O -0.32 -11.37 9.67 -73.38 -0.71 -12.08 16 9 C 0.12 4.24 6.68 22.47 0.15 4.39 16 10 C -0.21 -5.39 9.04 22.44 0.20 -5.19 16 11 C -0.07 -1.97 10.03 22.22 0.22 -1.75 16 12 C -0.15 -5.79 9.67 22.56 0.22 -5.57 16 13 C 0.04 1.65 5.28 -20.06 -0.11 1.54 16 14 C -0.05 -2.58 6.42 42.43 0.27 -2.31 16 15 N -0.42 -21.43 10.30 -182.29 -1.88 -23.31 16 16 C -0.12 -5.45 11.22 84.90 0.95 -4.49 16 17 C 0.08 3.71 11.22 84.96 0.95 4.66 16 18 N -0.49 -27.68 8.12 -187.84 -1.53 -29.21 16 19 C 0.19 10.93 6.51 40.35 0.26 11.20 16 20 C -0.42 -23.52 7.45 23.37 0.17 -23.34 16 21 H 0.10 5.44 5.37 -2.91 -0.02 5.42 16 22 C 0.03 1.48 5.49 85.33 0.47 1.95 16 23 N -0.74 -40.09 11.54 21.86 0.25 -39.83 16 24 Si 0.97 40.35 29.56 68.60 2.03 42.37 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 27 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 28 C -0.16 -7.06 7.48 22.64 0.17 -6.89 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 1.24 7.58 -2.39 -0.02 1.22 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.42 2.30 8.60 -92.72 -0.80 1.50 16 37 H 0.13 1.66 7.65 -2.39 -0.02 1.64 16 38 H 0.13 1.70 7.66 -2.39 -0.02 1.68 16 39 H 0.17 2.58 6.28 -2.91 -0.02 2.56 16 40 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 41 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.17 6.24 8.06 -2.91 -0.02 6.22 16 43 H 0.16 6.54 8.06 -2.91 -0.02 6.52 16 44 H 0.29 13.92 8.29 -92.71 -0.77 13.15 16 45 H 0.10 5.35 6.73 -2.91 -0.02 5.33 16 Total: -1.00 -83.01 382.61 2.92 -80.09 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.24 Total: 26.91 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 6.50 Total: -11.52 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -5.40 Total: -104.60 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.45 Total: -33.26 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -83.01 2.92 -80.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243886806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.779 kcal (2) G-P(sol) polarization free energy of solvation -83.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds