Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50698 * 109.46984 * 294.99719 * 4 2 1 6 6 C 1.36212 * 120.67122 * 265.00395 * 5 4 2 7 7 N 1.32575 * 121.88348 * 180.02562 * 6 5 4 8 8 C 1.31272 * 122.77018 * 359.97438 * 7 6 5 9 9 C 1.40393 * 119.88293 * 0.02562 * 8 7 6 10 10 C 1.40384 * 122.07159 * 179.97438 * 9 8 7 11 11 C 1.36168 * 119.51056 * 180.02562 * 10 9 8 12 12 C 1.39381 * 121.09043 * 359.97438 * 11 10 9 13 13 C 1.36219 * 121.02557 * 0.02814 * 12 11 10 14 14 C 1.40239 * 119.47844 * 359.67356 * 13 12 11 15 15 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 16 16 O 1.21285 * 120.00039 * 239.99931 * 15 2 1 17 17 N 1.34774 * 119.99942 * 59.99862 * 15 2 1 18 18 C 1.46500 * 119.99881 * 180.02562 * 17 15 2 19 19 C 1.50701 * 109.47209 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99881 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00311 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00286 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00061 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00323 * 180.02562 * 22 21 19 25 25 N 1.31419 * 119.99849 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00363 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46890 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47432 * 119.99387 * 26 24 22 29 29 H 1.48501 * 109.47062 * 239.99501 * 26 24 22 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 34 34 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 35 35 H 1.08007 * 119.05885 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.05472 * 179.97438 * 8 7 6 37 37 H 1.07999 * 120.24717 * 0.04222 * 10 9 8 38 38 H 1.07995 * 119.45506 * 179.97438 * 11 10 9 39 39 H 1.07994 * 119.48935 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.25976 * 179.97438 * 13 12 11 41 41 H 0.96998 * 120.00125 * 359.97438 * 17 15 2 42 42 H 1.09000 * 109.47175 * 300.00022 * 18 17 15 43 43 H 1.09002 * 109.47092 * 59.99980 * 18 17 15 44 44 H 0.97000 * 119.99784 * 359.97438 * 21 19 18 45 45 H 0.96997 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 6 2.5004 0.9496 3.0427 7 7 2.1750 1.6465 4.1225 8 6 1.0119 1.5295 4.7198 9 6 0.0535 0.6359 4.2159 10 6 -1.2041 0.4738 4.8184 11 6 -2.0942 -0.4084 4.2859 12 6 -1.7779 -1.1538 3.1514 13 6 -0.5675 -1.0229 2.5404 14 6 0.3723 -0.1191 3.0569 15 6 2.0323 -0.7104 -1.2305 16 8 2.7296 -1.6965 -1.1192 17 7 1.7067 -0.2499 -2.4545 18 6 2.1945 -0.9408 -3.6507 19 6 1.6918 -0.2307 -4.8812 20 8 0.9949 0.7558 -4.7699 21 7 2.0164 -0.6917 -6.1054 22 6 1.5595 -0.0454 -7.2247 23 1 0.9390 0.8330 -7.1256 24 6 1.8938 -0.5210 -8.4867 25 7 2.6484 -1.5901 -8.6074 26 14 1.2706 0.3592 -10.0119 27 1 0.4462 1.5265 -9.6077 28 1 2.4253 0.8248 -10.8214 29 1 0.4443 -0.5740 -10.8191 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 3.4747 1.0937 2.5993 36 1 0.7931 2.1190 5.5979 37 1 -1.4638 1.0448 5.6975 38 1 -3.0612 -0.5327 4.7504 39 1 -2.5036 -1.8459 2.7506 40 1 -0.3352 -1.6069 1.6621 41 1 1.1487 0.5386 -2.5435 42 1 3.2845 -0.9412 -3.6509 43 1 1.8308 -1.9683 -3.6506 44 1 2.5741 -1.4804 -6.1944 45 1 2.8821 -1.9219 -9.4884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359973708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -30.584627 kcal Electronic energy + Delta-G solvation = -28165.755528 eV Core-core repulsion = 24147.516934 eV Total energy + Delta-G solvation = -4018.238593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40379 -39.80420 -38.23587 -37.65120 -35.92358 -34.50949 -33.74134 -32.29407 -31.46088 -31.38386 -30.46824 -27.83105 -27.00825 -24.85728 -24.15870 -23.91168 -23.38423 -21.09604 -19.82792 -19.45524 -18.26886 -18.14841 -17.92813 -17.25539 -16.57836 -15.87327 -15.62126 -15.39341 -15.13493 -14.84887 -14.65783 -14.58072 -14.42234 -14.05198 -13.99621 -13.76760 -13.36199 -13.21092 -12.90792 -12.80243 -12.58101 -12.27116 -12.14543 -12.07553 -11.91453 -11.66703 -11.55152 -11.26592 -11.16720 -11.02741 -10.43358 -10.35352 -10.19784 -9.76772 -9.67883 -9.63335 -9.38776 -8.84133 -8.67094 -8.28564 -8.13388 -6.54552 -3.96633 0.04792 0.59620 1.59219 2.74663 2.76648 3.08001 3.19932 3.24971 3.32368 3.70426 3.76921 4.06726 4.11201 4.24337 4.40356 4.42441 4.57013 4.61811 4.71946 4.76955 4.83143 4.84506 4.87593 5.03753 5.13957 5.22110 5.29480 5.32242 5.45791 5.55679 5.58424 5.70319 5.72464 5.78719 5.87146 5.91631 5.94931 5.99392 6.03795 6.08891 6.18541 6.34515 6.51451 6.63292 7.43355 7.70762 7.75324 7.88984 8.37655 8.42703 9.01596 9.35941 9.83599 10.62332 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.001907 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.294531 B =14682.702650 C =15060.586796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 H 0.100 0.900 4 C -0.058 4.058 5 C -0.109 4.109 6 C 0.076 3.924 7 N -0.484 5.484 8 C 0.136 3.864 9 C -0.111 4.111 10 C -0.092 4.092 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.109 4.109 14 C -0.019 4.019 15 C 0.516 3.484 16 O -0.549 6.549 17 N -0.705 5.705 18 C 0.108 3.892 19 C 0.427 3.573 20 O -0.598 6.598 21 N -0.549 5.549 22 C -0.305 4.305 23 H 0.106 0.894 24 C 0.025 3.975 25 N -0.894 5.894 26 Si 0.933 3.067 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.411 0.589 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 1.257 25.868 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 H 0.118 0.882 4 C -0.097 4.097 5 C -0.111 4.111 6 C -0.067 4.067 7 N -0.190 5.190 8 C -0.036 4.036 9 C -0.113 4.113 10 C -0.112 4.112 11 C -0.136 4.136 12 C -0.123 4.123 13 C -0.127 4.127 14 C -0.024 4.024 15 C 0.301 3.699 16 O -0.427 6.427 17 N -0.359 5.359 18 C -0.020 4.020 19 C 0.213 3.787 20 O -0.484 6.484 21 N -0.184 5.184 22 C -0.434 4.434 23 H 0.124 0.876 24 C -0.178 4.178 25 N -0.534 5.534 26 Si 0.759 3.241 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.249 0.751 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.519 1.662 26.015 26.645 hybrid contribution -0.807 -0.338 -1.358 1.616 sum -6.326 1.324 24.657 25.490 Atomic orbital electron populations 1.22167 0.92915 1.02735 1.03297 1.21245 0.97816 1.01045 0.92314 0.88208 1.20338 1.02699 0.98071 0.88554 1.20648 0.93740 0.98691 0.97996 1.22142 0.99820 0.92570 0.92153 1.67433 1.19473 1.23155 1.08970 1.23166 0.88102 0.94361 0.97947 1.19041 0.96462 0.99180 0.96586 1.20966 0.92312 0.98310 0.99582 1.20945 0.99790 0.96434 0.96395 1.21026 0.96929 0.98948 0.95412 1.21333 0.93470 0.97821 1.00076 1.18056 0.94047 0.96055 0.94262 1.20459 0.80309 0.84652 0.84468 1.90690 1.38495 1.26579 1.86957 1.45729 1.53125 1.32426 1.04591 1.20963 0.99939 0.96579 0.84489 1.19751 0.86691 0.87714 0.84553 1.90498 1.43121 1.28756 1.86051 1.41809 1.44984 1.27370 1.04198 1.19777 1.29664 1.11044 0.82918 0.87618 1.25339 0.96587 0.96369 0.99488 1.69624 1.35973 1.22498 1.25327 0.85753 0.78553 0.79249 0.80504 1.19125 1.20588 1.20598 0.91030 0.91461 0.91711 0.89749 0.89260 0.82922 0.82181 0.85064 0.85665 0.85513 0.84276 0.75079 0.89827 0.89861 0.77035 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.44 37.16 0.28 -1.23 16 2 C -0.10 -1.12 2.71 -91.77 -0.25 -1.37 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.06 -0.60 3.97 -27.88 -0.11 -0.71 16 5 C -0.11 -1.08 4.85 -104.44 -0.51 -1.59 16 6 C 0.08 0.79 10.72 -17.96 -0.19 0.59 16 7 N -0.48 -5.23 10.30 -13.15 -0.14 -5.36 16 8 C 0.14 1.20 11.05 -16.98 -0.19 1.01 16 9 C -0.11 -0.98 5.74 -106.86 -0.61 -1.60 16 10 C -0.09 -0.62 9.81 -39.52 -0.39 -1.01 16 11 C -0.12 -0.76 9.94 -39.90 -0.40 -1.16 16 12 C -0.10 -0.75 9.95 -39.88 -0.40 -1.14 16 13 C -0.11 -0.93 7.07 -39.56 -0.28 -1.21 16 14 C -0.02 -0.18 4.77 -106.81 -0.51 -0.69 16 15 C 0.52 7.53 7.15 -10.99 -0.08 7.45 16 16 O -0.55 -9.59 15.92 5.55 0.09 -9.50 16 17 N -0.71 -11.22 5.42 -61.47 -0.33 -11.55 16 18 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 19 C 0.43 9.64 7.85 -10.98 -0.09 9.55 16 20 O -0.60 -15.06 15.24 5.55 0.08 -14.98 16 21 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 22 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 23 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 24 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 25 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 26 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.07 0.67 5.30 -51.93 -0.28 0.39 16 31 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 32 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 33 H 0.08 0.88 6.83 -51.93 -0.35 0.52 16 34 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 35 H 0.15 1.34 8.05 -52.48 -0.42 0.92 16 36 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.14 1.13 4.47 -52.49 -0.23 0.89 16 41 H 0.41 6.48 6.85 -40.82 -0.28 6.20 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -32.36 373.96 -8.51 -40.87 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.50 Total: 15.01 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.99 Total: 1.02 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.20 Total: -53.42 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.17 Total: -24.48 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.36 -8.51 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359973708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.285 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds