Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50698 * 109.46984 * 294.99719 * 4 2 1 6 6 C 1.36212 * 120.67122 * 265.00395 * 5 4 2 7 7 N 1.32575 * 121.88348 * 180.02562 * 6 5 4 8 8 C 1.31272 * 122.77018 * 359.97438 * 7 6 5 9 9 C 1.40393 * 119.88293 * 0.02562 * 8 7 6 10 10 C 1.40384 * 122.07159 * 179.97438 * 9 8 7 11 11 C 1.36168 * 119.51056 * 180.02562 * 10 9 8 12 12 C 1.39381 * 121.09043 * 359.97438 * 11 10 9 13 13 C 1.36219 * 121.02557 * 0.02814 * 12 11 10 14 14 C 1.40239 * 119.47844 * 359.67356 * 13 12 11 15 15 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 16 16 O 1.21285 * 120.00039 * 239.99931 * 15 2 1 17 17 N 1.34774 * 119.99942 * 59.99862 * 15 2 1 18 18 C 1.46500 * 119.99881 * 180.02562 * 17 15 2 19 19 C 1.50701 * 109.47209 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99881 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00311 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00286 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00061 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00323 * 180.02562 * 22 21 19 25 25 N 1.31419 * 119.99849 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00363 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46890 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47432 * 119.99387 * 26 24 22 29 29 H 1.48501 * 109.47062 * 239.99501 * 26 24 22 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 34 34 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 35 35 H 1.08007 * 119.05885 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.05472 * 179.97438 * 8 7 6 37 37 H 1.07999 * 120.24717 * 0.04222 * 10 9 8 38 38 H 1.07995 * 119.45506 * 179.97438 * 11 10 9 39 39 H 1.07994 * 119.48935 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.25976 * 179.97438 * 13 12 11 41 41 H 0.96998 * 120.00125 * 359.97438 * 17 15 2 42 42 H 1.09000 * 109.47175 * 300.00022 * 18 17 15 43 43 H 1.09002 * 109.47092 * 59.99980 * 18 17 15 44 44 H 0.97000 * 119.99784 * 359.97438 * 21 19 18 45 45 H 0.96997 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 6 2.5004 0.9496 3.0427 7 7 2.1750 1.6465 4.1225 8 6 1.0119 1.5295 4.7198 9 6 0.0535 0.6359 4.2159 10 6 -1.2041 0.4738 4.8184 11 6 -2.0942 -0.4084 4.2859 12 6 -1.7779 -1.1538 3.1514 13 6 -0.5675 -1.0229 2.5404 14 6 0.3723 -0.1191 3.0569 15 6 2.0323 -0.7104 -1.2305 16 8 2.7296 -1.6965 -1.1192 17 7 1.7067 -0.2499 -2.4545 18 6 2.1945 -0.9408 -3.6507 19 6 1.6918 -0.2307 -4.8812 20 8 0.9949 0.7558 -4.7699 21 7 2.0164 -0.6917 -6.1054 22 6 1.5595 -0.0454 -7.2247 23 1 0.9390 0.8330 -7.1256 24 6 1.8938 -0.5210 -8.4867 25 7 2.6484 -1.5901 -8.6074 26 14 1.2706 0.3592 -10.0119 27 1 0.4462 1.5265 -9.6077 28 1 2.4253 0.8248 -10.8214 29 1 0.4443 -0.5740 -10.8191 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 3.4747 1.0937 2.5993 36 1 0.7931 2.1190 5.5979 37 1 -1.4638 1.0448 5.6975 38 1 -3.0612 -0.5327 4.7504 39 1 -2.5036 -1.8459 2.7506 40 1 -0.3352 -1.6069 1.6621 41 1 1.1487 0.5386 -2.5435 42 1 3.2845 -0.9412 -3.6509 43 1 1.8308 -1.9683 -3.6506 44 1 2.5741 -1.4804 -6.1944 45 1 2.8821 -1.9219 -9.4884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359973708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = -51.584328 kcal Electronic energy + Delta-G solvation = -28166.666143 eV Core-core repulsion = 24147.516934 eV Total energy + Delta-G solvation = -4019.149209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.08724 -41.07680 -39.98188 -38.25098 -36.80674 -36.25659 -35.33579 -33.41465 -33.03539 -32.06157 -31.10549 -29.33604 -27.80229 -26.59965 -24.95734 -24.61386 -24.20498 -21.97834 -21.39780 -20.74409 -20.05397 -18.87859 -18.74563 -18.32308 -17.40832 -17.29494 -16.95590 -16.80891 -16.40596 -15.93082 -15.84552 -15.64466 -15.38750 -15.23073 -15.05415 -14.78099 -14.38710 -14.14449 -13.97874 -13.70903 -13.57786 -13.56364 -13.42671 -13.26717 -12.92222 -12.88855 -12.65873 -12.45977 -12.33371 -12.12203 -12.05550 -11.72126 -11.59315 -10.92293 -10.84921 -10.57607 -10.39425 -10.21186 -10.09331 -9.99435 -8.91840 -8.52537 -6.02703 -0.56448 -0.03145 0.97888 1.33954 1.42146 1.55978 1.56153 1.89451 2.00082 2.16434 2.31128 3.09962 3.12882 3.14617 3.40021 3.59639 3.70043 3.74165 3.82395 3.90280 3.96652 4.04933 4.18108 4.19413 4.32112 4.34308 4.40427 4.42073 4.46873 4.60829 4.70757 4.76976 4.82597 4.84979 5.00231 5.10809 5.14306 5.17108 5.24737 5.28085 5.37518 5.53565 5.57319 5.71538 5.90502 5.96984 6.43866 6.51239 7.02223 7.02761 7.13653 7.42911 7.92900 8.64522 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.001907 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.294531 B =14682.702650 C =15060.586796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.110 0.890 4 C -0.049 4.049 5 C -0.116 4.116 6 C 0.063 3.937 7 N -0.512 5.512 8 C 0.138 3.862 9 C -0.126 4.126 10 C -0.089 4.089 11 C -0.121 4.121 12 C -0.101 4.101 13 C -0.128 4.128 14 C -0.033 4.033 15 C 0.519 3.481 16 O -0.576 6.576 17 N -0.707 5.707 18 C 0.120 3.880 19 C 0.432 3.568 20 O -0.624 6.624 21 N -0.560 5.560 22 C -0.336 4.336 23 H 0.086 0.914 24 C -0.012 4.012 25 N -0.916 5.916 26 Si 0.997 3.003 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.190 0.810 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.413 0.587 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.399 0.601 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 1.505 27.150 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.128 0.872 4 C -0.088 4.088 5 C -0.118 4.118 6 C -0.080 4.080 7 N -0.219 5.219 8 C -0.033 4.033 9 C -0.128 4.128 10 C -0.109 4.109 11 C -0.139 4.139 12 C -0.120 4.120 13 C -0.146 4.146 14 C -0.038 4.038 15 C 0.307 3.693 16 O -0.456 6.456 17 N -0.360 5.360 18 C -0.008 4.008 19 C 0.219 3.781 20 O -0.512 6.512 21 N -0.195 5.195 22 C -0.465 4.465 23 H 0.104 0.896 24 C -0.212 4.212 25 N -0.556 5.556 26 Si 0.820 3.180 27 H -0.194 1.194 28 H -0.197 1.197 29 H -0.196 1.196 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.174 0.826 36 H 0.207 0.793 37 H 0.178 0.822 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.251 0.749 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.233 0.767 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.005 1.899 27.313 28.261 hybrid contribution -0.412 -0.435 -1.624 1.731 sum -7.417 1.464 25.689 26.778 Atomic orbital electron populations 1.22129 0.91787 1.03113 1.03421 1.21223 0.98582 1.01016 0.90551 0.87197 1.20209 1.02118 0.97903 0.88535 1.20536 0.94262 0.98989 0.98011 1.22272 1.00252 0.92941 0.92509 1.67457 1.20709 1.24142 1.09637 1.23699 0.87385 0.94029 0.98231 1.19297 0.97548 0.99317 0.96667 1.21327 0.91222 0.98230 1.00118 1.21311 1.00874 0.95711 0.95959 1.21360 0.96590 0.98740 0.95300 1.21379 0.94130 0.98358 1.00737 1.18249 0.94072 0.96648 0.94865 1.21050 0.79359 0.84168 0.84754 1.90678 1.39727 1.27932 1.87282 1.45766 1.53373 1.32475 1.04427 1.20784 1.00343 0.96529 0.83116 1.20449 0.85298 0.87058 0.85248 1.90475 1.44048 1.29990 1.86692 1.41862 1.45559 1.27650 1.04469 1.19762 1.30909 1.11422 0.84414 0.89596 1.26139 0.96388 0.96925 1.01789 1.69686 1.36351 1.23233 1.26329 0.84809 0.78191 0.78085 0.76881 1.19433 1.19669 1.19608 0.90269 0.91842 0.91286 0.90117 0.89999 0.82551 0.79303 0.82167 0.82960 0.83707 0.84495 0.74868 0.88861 0.88754 0.76711 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 7.44 71.98 0.54 -2.24 16 2 C -0.09 -1.98 2.71 -11.54 -0.03 -2.01 16 3 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.05 -1.01 3.97 29.85 0.12 -0.89 16 5 C -0.12 -2.30 4.85 -19.75 -0.10 -2.40 16 6 C 0.06 1.30 10.72 84.11 0.90 2.21 16 7 N -0.51 -10.85 10.30 -195.53 -2.01 -12.87 16 8 C 0.14 2.23 11.05 85.30 0.94 3.17 16 9 C -0.13 -2.04 5.74 -21.31 -0.12 -2.16 16 10 C -0.09 -0.95 9.81 22.31 0.22 -0.73 16 11 C -0.12 -1.18 9.94 22.06 0.22 -0.96 16 12 C -0.10 -1.22 9.95 22.07 0.22 -1.00 16 13 C -0.13 -2.04 7.07 22.29 0.16 -1.89 16 14 C -0.03 -0.62 4.77 -21.28 -0.10 -0.72 16 15 C 0.52 15.00 7.15 87.66 0.63 15.62 16 16 O -0.58 -20.04 15.92 -3.05 -0.05 -20.08 16 17 N -0.71 -22.26 5.42 -466.78 -2.53 -24.79 16 18 C 0.12 4.29 6.15 85.63 0.53 4.81 16 19 C 0.43 19.70 7.85 87.66 0.69 20.38 16 20 O -0.62 -31.86 15.24 -3.07 -0.05 -31.90 16 21 N -0.56 -27.90 5.29 -306.98 -1.62 -29.53 16 22 C -0.34 -18.39 9.68 84.04 0.81 -17.58 16 23 H 0.09 4.97 7.16 -2.91 -0.02 4.94 16 24 C -0.01 -0.61 5.50 84.92 0.47 -0.15 16 25 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 26 Si 1.00 41.57 29.55 68.60 2.03 43.59 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 29 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 30 H 0.08 1.40 5.30 -2.39 -0.01 1.39 16 31 H 0.06 1.24 7.56 -2.39 -0.02 1.22 16 32 H 0.07 1.23 6.54 -2.39 -0.02 1.22 16 33 H 0.08 1.69 6.83 -2.39 -0.02 1.68 16 34 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 35 H 0.16 2.87 8.05 -2.91 -0.02 2.85 16 36 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.14 2.14 4.47 -2.91 -0.01 2.13 16 41 H 0.41 12.93 6.85 -92.71 -0.64 12.30 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -69.51 373.96 1.83 -67.68 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.31 Total: 42.56 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.09 Total: 13.48 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -5.88 Total: -115.33 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.10 Total: -51.99 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -69.51 1.83 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359973708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.095 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds