Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.77597 * 2 1 4 4 C 1.54325 * 110.72211 * 123.23989 * 2 1 3 5 5 N 1.47028 * 107.27000 * 140.55757 * 4 2 1 6 6 C 1.34777 * 125.64781 * 181.02325 * 5 4 2 7 7 O 1.21638 * 119.99871 * 174.45167 * 6 5 4 8 8 C 1.47149 * 119.99830 * 354.46072 * 6 5 4 9 9 C 1.39030 * 121.10210 * 7.13559 * 8 6 5 10 10 N 1.32071 * 121.40908 * 179.70307 * 9 8 6 11 11 C 1.31824 * 123.59986 * 0.60027 * 10 9 8 12 12 O 1.35252 * 119.61530 * 179.71874 * 11 10 9 13 13 C 1.41185 * 120.77342 * 359.70016 * 11 10 9 14 14 C 1.40131 * 122.10392 * 179.97438 * 13 11 10 15 15 C 1.36353 * 119.50498 * 180.02562 * 14 13 11 16 16 C 1.39179 * 121.05568 * 359.97438 * 15 14 13 17 17 C 1.36515 * 120.89627 * 359.97438 * 16 15 14 18 18 C 1.39621 * 119.43690 * 0.02562 * 17 16 15 19 19 C 1.47424 * 108.70164 * 1.05713 * 5 4 2 20 20 C 1.54905 * 104.83488 * 335.87122 * 19 5 4 21 21 H 1.09007 * 111.00432 * 155.11838 * 20 19 5 22 22 N 1.46500 * 111.00875 * 278.93297 * 20 19 5 23 23 C 1.36932 * 120.00177 * 273.55176 * 22 20 19 24 24 H 1.08005 * 119.99803 * 359.97438 * 23 22 20 25 25 C 1.38805 * 120.00003 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00230 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00056 * 180.27279 * 25 23 22 28 28 H 1.48502 * 109.47386 * 179.72621 * 27 25 23 29 29 H 1.48505 * 109.46975 * 299.72370 * 27 25 23 30 30 H 1.48504 * 109.47462 * 59.72057 * 27 25 23 31 31 H 1.09006 * 109.47033 * 183.23890 * 1 2 3 32 32 H 1.08995 * 109.47013 * 303.23075 * 1 2 3 33 33 H 1.09001 * 109.47438 * 63.23861 * 1 2 3 34 34 H 1.09000 * 109.88243 * 21.14001 * 4 2 1 35 35 H 1.08993 * 110.01130 * 260.04549 * 4 2 1 36 36 H 1.08004 * 119.29386 * 359.97438 * 9 8 6 37 37 H 0.96699 * 113.99832 * 269.97910 * 12 11 10 38 38 H 1.07990 * 120.24496 * 0.04443 * 14 13 11 39 39 H 1.08003 * 119.47278 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.56002 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.28709 * 180.02562 * 17 16 15 42 42 H 1.09004 * 110.36855 * 217.03273 * 19 5 4 43 43 H 1.08996 * 110.45848 * 94.75916 * 19 5 4 44 44 H 0.97003 * 119.99535 * 93.54310 * 22 20 19 45 45 H 0.96999 * 120.00194 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2446 -1.5507 0.7389 6 6 3.9924 -2.3836 1.4896 7 8 4.8774 -3.0389 0.9729 8 6 3.7382 -2.5003 2.9343 9 6 2.6434 -1.8779 3.5234 10 7 2.4063 -1.9833 4.8183 11 6 3.1742 -2.6616 5.6478 12 8 2.8581 -2.7116 6.9619 13 6 4.3226 -3.3369 5.1803 14 6 5.1586 -4.0655 6.0372 15 6 6.2548 -4.6971 5.5288 16 6 6.5570 -4.6305 4.1719 17 6 5.7627 -3.9301 3.3104 18 6 4.6327 -3.2722 3.7998 19 6 3.4632 -1.2497 -0.6876 20 6 2.0789 -0.7955 -1.2138 21 1 2.1849 -0.1523 -2.0875 22 7 1.2271 -1.9488 -1.5146 23 6 1.2982 -2.5509 -2.7423 24 1 1.9821 -2.1753 -3.4891 25 6 0.4915 -3.6440 -3.0270 26 7 -0.3415 -4.1020 -2.1167 27 14 0.5940 -4.4702 -4.6993 28 1 -0.3580 -5.6088 -4.7481 29 1 0.2467 -3.4888 -5.7584 30 1 1.9749 -4.9696 -4.9209 31 1 -0.3633 -1.0261 0.0581 32 1 -0.3633 0.5632 0.8596 33 1 -0.3634 0.4627 -0.9176 34 1 1.3130 -1.4759 1.5775 35 1 2.3736 -0.1044 1.9995 36 1 1.9702 -1.2994 2.9082 37 1 3.2509 -2.0017 7.4881 38 1 4.9360 -4.1264 7.0921 39 1 6.8985 -5.2588 6.1896 40 1 7.4313 -5.1405 3.7950 41 1 6.0062 -3.8853 2.2591 42 1 3.7960 -2.1425 -1.2171 43 1 4.1935 -0.4485 -0.8003 44 1 0.6127 -2.2859 -0.8439 45 1 -0.9050 -4.8661 -2.3156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939256895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 28.874349 kcal Electronic energy + Delta-G solvation = -29777.595504 eV Core-core repulsion = 25761.935245 eV Total energy + Delta-G solvation = -4015.660259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23177 -39.77491 -38.23449 -37.51610 -36.85691 -34.06917 -32.41341 -32.14956 -31.34808 -30.75531 -29.75721 -27.60062 -26.56533 -24.75647 -23.82911 -23.73528 -22.79698 -21.86737 -19.73286 -19.57387 -19.16774 -17.86220 -17.83745 -17.37624 -16.61989 -15.97320 -15.90925 -15.29547 -14.98180 -14.78105 -14.48392 -14.30358 -13.98778 -13.79262 -13.64555 -13.41333 -13.01888 -12.84366 -12.63762 -12.30559 -12.22739 -12.13573 -12.07449 -11.76987 -11.57021 -11.46978 -11.17814 -10.92085 -10.77310 -10.55460 -10.30861 -10.03722 -9.99475 -9.78312 -9.66517 -9.31601 -9.28610 -9.03168 -8.38229 -8.12510 -7.03114 -5.81942 -3.11586 -0.11264 0.71231 1.51943 2.62241 3.13101 3.22509 3.29844 3.42597 3.47914 3.48154 3.89965 4.34177 4.37095 4.50427 4.54460 4.67013 4.71502 4.83864 4.88167 5.07423 5.08583 5.20573 5.26936 5.43114 5.48643 5.51588 5.58892 5.61958 5.68246 5.78618 5.86660 5.93737 6.09615 6.13709 6.16525 6.27622 6.28789 6.30834 6.34997 6.47952 6.63099 6.68605 6.74835 6.86241 7.15530 7.65645 7.69244 7.77319 8.35791 8.37494 9.47869 10.01613 10.35969 11.40146 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003237 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.117620 B = 8648.128963 C = 9453.253542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 H 0.084 0.916 4 C 0.090 3.910 5 N -0.592 5.592 6 C 0.580 3.420 7 O -0.538 6.538 8 C -0.175 4.175 9 C 0.107 3.893 10 N -0.512 5.512 11 C 0.373 3.627 12 O -0.476 6.476 13 C -0.130 4.130 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.097 4.097 17 C -0.108 4.108 18 C 0.023 3.977 19 C 0.077 3.923 20 C 0.171 3.829 21 H 0.073 0.927 22 N -0.709 5.709 23 C -0.247 4.247 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.930 5.930 27 Si 0.907 3.093 28 H -0.291 1.291 29 H -0.285 1.285 30 H -0.285 1.285 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.196 0.804 37 H 0.404 0.596 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.168 0.832 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.386 0.614 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 7.502 17.516 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 H 0.103 0.897 4 C -0.033 4.033 5 N -0.324 5.324 6 C 0.369 3.631 7 O -0.417 6.417 8 C -0.180 4.180 9 C -0.036 4.036 10 N -0.231 5.231 11 C 0.181 3.819 12 O -0.283 6.283 13 C -0.133 4.133 14 C -0.104 4.104 15 C -0.140 4.140 16 C -0.116 4.116 17 C -0.126 4.126 18 C 0.018 3.982 19 C -0.048 4.048 20 C 0.058 3.942 21 H 0.091 0.909 22 N -0.350 5.350 23 C -0.377 4.377 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.212 1.212 30 H -0.212 1.212 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.212 0.788 37 H 0.264 0.736 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.185 0.815 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.222 0.778 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.787 6.980 17.190 20.976 hybrid contribution 0.702 -0.817 -0.618 1.242 sum 10.489 6.163 16.572 20.558 Atomic orbital electron populations 1.21638 0.93195 1.03131 1.01288 1.22529 0.97240 0.98670 0.94728 0.89743 1.22608 0.88225 0.94780 0.97676 1.48164 1.28834 1.43175 1.12178 1.17237 0.81761 0.79233 0.84841 1.90631 1.33390 1.44400 1.73326 1.21903 0.98826 1.02884 0.94371 1.24265 0.94869 0.95095 0.89379 1.66726 1.31057 1.19740 1.05576 1.19480 0.87085 0.90104 0.85266 1.84628 1.75777 1.53421 1.14506 1.18891 0.96915 1.03427 0.94095 1.20866 0.93930 0.96042 0.99596 1.20985 0.97517 0.99724 0.95752 1.21199 0.99464 0.97684 0.93234 1.21828 0.92627 0.95106 1.03004 1.18801 0.94245 0.94531 0.90668 1.23391 1.00644 1.01182 0.79553 1.21398 0.88612 0.89947 0.94226 0.90877 1.42355 1.44998 1.32422 1.15183 1.19164 1.18376 1.09371 0.90832 0.91050 1.24731 0.98922 0.98714 0.98000 1.69639 1.27212 1.27319 1.33531 0.86274 0.77278 0.78949 0.83693 1.21715 1.21191 1.21193 0.91166 0.93447 0.91826 0.90265 0.91037 0.78844 0.73637 0.84633 0.85458 0.85245 0.81530 0.89558 0.92523 0.77818 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.71 37.16 0.32 -1.59 16 2 C -0.11 -1.56 3.42 -88.78 -0.30 -1.86 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.09 1.25 4.48 -3.06 -0.01 1.23 16 5 N -0.59 -10.06 3.33 -173.76 -0.58 -10.64 16 6 C 0.58 10.61 7.78 -12.64 -0.10 10.51 16 7 O -0.54 -11.15 14.00 5.24 0.07 -11.08 16 8 C -0.17 -2.82 6.06 -102.68 -0.62 -3.44 16 9 C 0.11 1.56 9.82 -17.16 -0.17 1.39 16 10 N -0.51 -7.35 10.25 -12.66 -0.13 -7.48 16 11 C 0.37 4.78 7.79 -16.44 -0.13 4.65 16 12 O -0.48 -4.62 12.80 -17.45 -0.22 -4.84 16 13 C -0.13 -1.68 5.75 -106.77 -0.61 -2.30 16 14 C -0.08 -0.86 9.58 -39.55 -0.38 -1.24 16 15 C -0.12 -1.15 9.95 -39.91 -0.40 -1.55 16 16 C -0.10 -1.07 9.96 -39.85 -0.40 -1.46 16 17 C -0.11 -1.55 9.32 -39.69 -0.37 -1.92 16 18 C 0.02 0.34 5.90 -104.77 -0.62 -0.27 16 19 C 0.08 1.38 6.63 -2.53 -0.02 1.36 16 20 C 0.17 3.06 3.44 -65.78 -0.23 2.83 16 21 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 22 N -0.71 -16.52 4.74 -51.35 -0.24 -16.76 16 23 C -0.25 -6.56 9.98 -15.06 -0.15 -6.71 16 24 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 27 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.07 1.20 6.35 -51.93 -0.33 0.87 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.16 6.38 -51.93 -0.33 0.83 16 35 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 36 H 0.20 2.53 2.79 -54.93 -0.15 2.37 16 37 H 0.40 1.67 9.06 45.56 0.41 2.08 16 38 H 0.14 1.01 7.66 -52.49 -0.40 0.61 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.17 2.68 5.27 -52.49 -0.28 2.41 16 42 H 0.09 1.84 7.99 -51.93 -0.41 1.43 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.39 9.63 6.08 -40.82 -0.25 9.38 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -34.11 364.41 -8.78 -42.89 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.60 Total: 12.69 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -4.28 Total: -0.66 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.23 Total: -61.69 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.15 Total: -15.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.11 -8.78 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939256895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.769 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds