Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.77597 * 2 1 4 4 C 1.54325 * 110.72211 * 123.23989 * 2 1 3 5 5 N 1.47028 * 107.27000 * 140.55757 * 4 2 1 6 6 C 1.34777 * 125.64781 * 181.02325 * 5 4 2 7 7 O 1.21638 * 119.99871 * 174.45167 * 6 5 4 8 8 C 1.47149 * 119.99830 * 354.46072 * 6 5 4 9 9 C 1.39030 * 121.10210 * 7.13559 * 8 6 5 10 10 N 1.32071 * 121.40908 * 179.70307 * 9 8 6 11 11 C 1.31824 * 123.59986 * 0.60027 * 10 9 8 12 12 O 1.35252 * 119.61530 * 179.71874 * 11 10 9 13 13 C 1.41185 * 120.77342 * 359.70016 * 11 10 9 14 14 C 1.40131 * 122.10392 * 179.97438 * 13 11 10 15 15 C 1.36353 * 119.50498 * 180.02562 * 14 13 11 16 16 C 1.39179 * 121.05568 * 359.97438 * 15 14 13 17 17 C 1.36515 * 120.89627 * 359.97438 * 16 15 14 18 18 C 1.39621 * 119.43690 * 0.02562 * 17 16 15 19 19 C 1.47424 * 108.70164 * 1.05713 * 5 4 2 20 20 C 1.54905 * 104.83488 * 335.87122 * 19 5 4 21 21 H 1.09007 * 111.00432 * 155.11838 * 20 19 5 22 22 N 1.46500 * 111.00875 * 278.93297 * 20 19 5 23 23 C 1.36932 * 120.00177 * 273.55176 * 22 20 19 24 24 H 1.08005 * 119.99803 * 359.97438 * 23 22 20 25 25 C 1.38805 * 120.00003 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00230 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00056 * 180.27279 * 25 23 22 28 28 H 1.48502 * 109.47386 * 179.72621 * 27 25 23 29 29 H 1.48505 * 109.46975 * 299.72370 * 27 25 23 30 30 H 1.48504 * 109.47462 * 59.72057 * 27 25 23 31 31 H 1.09006 * 109.47033 * 183.23890 * 1 2 3 32 32 H 1.08995 * 109.47013 * 303.23075 * 1 2 3 33 33 H 1.09001 * 109.47438 * 63.23861 * 1 2 3 34 34 H 1.09000 * 109.88243 * 21.14001 * 4 2 1 35 35 H 1.08993 * 110.01130 * 260.04549 * 4 2 1 36 36 H 1.08004 * 119.29386 * 359.97438 * 9 8 6 37 37 H 0.96699 * 113.99832 * 269.97910 * 12 11 10 38 38 H 1.07990 * 120.24496 * 0.04443 * 14 13 11 39 39 H 1.08003 * 119.47278 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.56002 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.28709 * 180.02562 * 17 16 15 42 42 H 1.09004 * 110.36855 * 217.03273 * 19 5 4 43 43 H 1.08996 * 110.45848 * 94.75916 * 19 5 4 44 44 H 0.97003 * 119.99535 * 93.54310 * 22 20 19 45 45 H 0.96999 * 120.00194 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2446 -1.5507 0.7389 6 6 3.9924 -2.3836 1.4896 7 8 4.8774 -3.0389 0.9729 8 6 3.7382 -2.5003 2.9343 9 6 2.6434 -1.8779 3.5234 10 7 2.4063 -1.9833 4.8183 11 6 3.1742 -2.6616 5.6478 12 8 2.8581 -2.7116 6.9619 13 6 4.3226 -3.3369 5.1803 14 6 5.1586 -4.0655 6.0372 15 6 6.2548 -4.6971 5.5288 16 6 6.5570 -4.6305 4.1719 17 6 5.7627 -3.9301 3.3104 18 6 4.6327 -3.2722 3.7998 19 6 3.4632 -1.2497 -0.6876 20 6 2.0789 -0.7955 -1.2138 21 1 2.1849 -0.1523 -2.0875 22 7 1.2271 -1.9488 -1.5146 23 6 1.2982 -2.5509 -2.7423 24 1 1.9821 -2.1753 -3.4891 25 6 0.4915 -3.6440 -3.0270 26 7 -0.3415 -4.1020 -2.1167 27 14 0.5940 -4.4702 -4.6993 28 1 -0.3580 -5.6088 -4.7481 29 1 0.2467 -3.4888 -5.7584 30 1 1.9749 -4.9696 -4.9209 31 1 -0.3633 -1.0261 0.0581 32 1 -0.3633 0.5632 0.8596 33 1 -0.3634 0.4627 -0.9176 34 1 1.3130 -1.4759 1.5775 35 1 2.3736 -0.1044 1.9995 36 1 1.9702 -1.2994 2.9082 37 1 3.2509 -2.0017 7.4881 38 1 4.9360 -4.1264 7.0921 39 1 6.8985 -5.2588 6.1896 40 1 7.4313 -5.1405 3.7950 41 1 6.0062 -3.8853 2.2591 42 1 3.7960 -2.1425 -1.2171 43 1 4.1935 -0.4485 -0.8003 44 1 0.6127 -2.2859 -0.8439 45 1 -0.9050 -4.8661 -2.3156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939256895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = 2.557550 kcal Electronic energy + Delta-G solvation = -29778.736686 eV Core-core repulsion = 25761.935245 eV Total energy + Delta-G solvation = -4016.801441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27444 -41.00783 -39.27336 -38.73088 -37.83068 -35.80795 -33.94751 -33.15326 -32.36711 -32.21231 -31.06030 -29.02797 -27.75993 -26.06501 -25.49047 -24.71940 -23.93612 -23.04942 -20.96176 -20.85576 -20.20237 -19.41871 -18.86825 -18.68309 -17.76226 -17.27081 -16.89703 -16.55384 -16.53278 -15.97399 -15.78194 -15.61544 -15.42519 -14.86539 -14.79960 -14.63936 -14.43009 -14.16606 -13.95956 -13.52732 -13.28333 -13.18183 -13.06472 -12.94088 -12.90828 -12.83563 -12.76709 -12.47633 -12.31299 -12.19851 -11.97222 -11.49909 -11.33700 -11.03650 -11.01245 -10.94287 -10.46415 -10.22620 -9.76343 -9.15107 -8.96383 -7.95251 -5.22228 -1.11076 -0.24138 0.56027 1.44870 1.47913 1.52956 1.55125 1.87291 2.09931 2.38183 2.54818 2.89116 3.24211 3.34851 3.38991 3.50242 3.56827 3.76197 3.82407 3.88933 3.98934 4.06353 4.10664 4.25364 4.31884 4.40754 4.42421 4.51976 4.60649 4.67775 4.71622 4.83248 4.91345 4.92822 5.01257 5.05165 5.21425 5.23943 5.26970 5.36557 5.40628 5.47110 5.51815 5.62584 5.81347 6.26937 6.44658 6.48303 6.70893 7.03016 7.34486 8.10421 8.31940 9.27687 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003237 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.117620 B = 8648.128963 C = 9453.253542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 H 0.127 0.873 4 C 0.088 3.912 5 N -0.597 5.597 6 C 0.571 3.429 7 O -0.579 6.579 8 C -0.210 4.210 9 C 0.119 3.881 10 N -0.536 5.536 11 C 0.393 3.607 12 O -0.472 6.472 13 C -0.147 4.147 14 C -0.071 4.071 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.149 4.149 18 C 0.004 3.996 19 C 0.084 3.916 20 C 0.160 3.840 21 H 0.084 0.916 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.077 0.923 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.299 1.299 29 H -0.272 1.272 30 H -0.286 1.286 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.205 0.795 37 H 0.431 0.569 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.137 0.863 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.376 0.624 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 8.853 20.483 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 H 0.145 0.855 4 C -0.034 4.034 5 N -0.327 5.327 6 C 0.362 3.638 7 O -0.461 6.461 8 C -0.215 4.215 9 C -0.024 4.024 10 N -0.256 5.256 11 C 0.201 3.799 12 O -0.284 6.284 13 C -0.150 4.150 14 C -0.091 4.091 15 C -0.136 4.136 16 C -0.099 4.099 17 C -0.166 4.166 18 C -0.001 4.001 19 C -0.041 4.041 20 C 0.049 3.951 21 H 0.101 0.899 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.095 0.905 25 C -0.265 4.265 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.225 1.225 29 H -0.198 1.198 30 H -0.213 1.213 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.221 0.779 37 H 0.296 0.704 38 H 0.189 0.811 39 H 0.187 0.813 40 H 0.170 0.830 41 H 0.155 0.845 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.210 0.790 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.804 8.411 20.181 24.387 hybrid contribution 0.518 -1.226 -1.344 1.891 sum 11.322 7.185 18.837 23.122 Atomic orbital electron populations 1.21574 0.93298 1.01296 1.02536 1.22542 0.97000 0.99923 0.92039 0.85546 1.22810 0.86952 0.94923 0.98684 1.48267 1.29454 1.43299 1.11677 1.17727 0.81322 0.78736 0.86035 1.90606 1.35179 1.46017 1.74337 1.21764 1.00820 1.05804 0.93143 1.24360 0.94020 0.94280 0.89757 1.66818 1.31962 1.21357 1.05426 1.19645 0.86015 0.88093 0.86197 1.84573 1.76001 1.54828 1.13037 1.19104 0.97892 1.04571 0.93483 1.21324 0.92904 0.94026 1.00808 1.21425 0.97703 0.99286 0.95220 1.21558 0.98962 0.95540 0.93886 1.21669 0.94397 0.98141 1.02421 1.19009 0.94431 0.94793 0.91824 1.23195 1.00975 0.99944 0.80023 1.21691 0.88027 0.88810 0.96555 0.89872 1.42504 1.45701 1.33828 1.13936 1.19579 1.16807 1.08683 0.91975 0.90507 1.25459 0.99697 1.00106 1.01207 1.69795 1.28730 1.27963 1.35289 0.85321 0.76685 0.77895 0.80517 1.22515 1.19814 1.21316 0.94787 0.89926 0.92489 0.91270 0.87268 0.77898 0.70414 0.81119 0.81314 0.82963 0.84502 0.94191 0.89560 0.79050 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.71 71.98 0.63 -2.89 16 2 C -0.10 -2.48 3.42 -9.60 -0.03 -2.52 16 3 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.09 2.36 4.48 86.73 0.39 2.75 16 5 N -0.60 -20.82 3.33 -821.90 -2.73 -23.55 16 6 C 0.57 22.18 7.78 86.58 0.67 22.85 16 7 O -0.58 -26.15 14.00 -4.15 -0.06 -26.21 16 8 C -0.21 -7.03 6.06 -18.60 -0.11 -7.15 16 9 C 0.12 3.45 9.82 84.85 0.83 4.28 16 10 N -0.54 -14.71 10.25 -307.29 -3.15 -17.85 16 11 C 0.39 9.22 7.79 85.42 0.67 9.89 16 12 O -0.47 -7.47 12.80 -85.36 -1.09 -8.56 16 13 C -0.15 -3.57 5.75 -21.26 -0.12 -3.69 16 14 C -0.07 -1.18 9.58 22.29 0.21 -0.97 16 15 C -0.12 -1.81 9.95 22.06 0.22 -1.59 16 16 C -0.08 -1.67 9.96 22.09 0.22 -1.45 16 17 C -0.15 -4.44 9.32 22.20 0.21 -4.23 16 18 C 0.00 0.14 5.90 -19.96 -0.12 0.02 16 19 C 0.08 3.05 6.63 86.85 0.58 3.63 16 20 C 0.16 5.71 3.44 46.38 0.16 5.87 16 21 H 0.08 2.82 8.13 -2.38 -0.02 2.80 16 22 N -0.72 -34.63 4.74 -316.37 -1.50 -36.13 16 23 C -0.24 -13.05 9.98 84.03 0.84 -12.21 16 24 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 25 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 26 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 27 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 28 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 30 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 31 H 0.03 1.17 6.35 -2.38 -0.02 1.16 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 2.03 6.38 -2.39 -0.02 2.02 16 35 H 0.11 2.16 6.77 -2.39 -0.02 2.15 16 36 H 0.21 5.18 2.79 -5.20 -0.01 5.16 16 37 H 0.43 1.74 9.06 -74.06 -0.67 1.06 16 38 H 0.17 1.60 7.66 -2.92 -0.02 1.58 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.14 4.89 5.27 -2.91 -0.02 4.88 16 42 H 0.04 1.81 7.99 -2.39 -0.02 1.80 16 43 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.38 19.59 6.08 -92.71 -0.56 19.02 16 45 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -80.49 364.41 -0.69 -81.18 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.17 Total: 32.57 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.70 Total: 8.89 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -7.10 Total: -136.94 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.15 Total: -34.77 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -80.49 -0.69 -81.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939256895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.733 kcal (2) G-P(sol) polarization free energy of solvation -80.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds