Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.88633 * 2 1 4 4 C 1.54907 * 111.00494 * 236.11495 * 2 1 3 5 5 N 1.47425 * 104.83301 * 204.87709 * 4 2 1 6 6 C 1.34775 * 125.64868 * 204.09026 * 5 4 2 7 7 O 1.21548 * 120.00002 * 5.88716 * 6 5 4 8 8 C 1.47866 * 119.99763 * 185.60715 * 6 5 4 9 9 C 1.39680 * 120.07587 * 353.05125 * 8 6 5 10 10 C 1.38054 * 120.14549 * 179.74263 * 9 8 6 11 11 C 1.38101 * 120.29962 * 0.55763 * 10 9 8 12 12 C 1.39640 * 120.14606 * 359.69528 * 11 10 9 13 13 C 1.47852 * 120.07325 * 180.02562 * 12 11 10 14 14 C 1.35764 * 126.58322 * 359.97438 * 13 12 11 15 15 N 1.34138 * 107.51585 * 179.97438 * 14 13 12 16 16 C 1.30359 * 108.90281 * 0.02562 * 15 14 13 17 17 O 1.33993 * 109.03318 * 359.76865 * 16 15 14 18 18 C 1.39315 * 120.07277 * 173.32274 * 8 6 5 19 19 C 1.47023 * 108.70196 * 24.35850 * 5 4 2 20 20 C 1.54339 * 107.26314 * 358.58501 * 19 5 4 21 21 H 1.08999 * 110.66866 * 96.52893 * 20 19 5 22 22 N 1.46500 * 110.84441 * 219.67321 * 20 19 5 23 23 C 1.36946 * 120.00031 * 268.69119 * 22 20 19 24 24 H 1.07998 * 119.99470 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99952 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00133 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99930 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.46750 * 59.99612 * 27 25 23 29 29 H 1.48495 * 109.47242 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47271 * 300.00146 * 27 25 23 31 31 H 1.08999 * 109.47159 * 182.42756 * 1 2 3 32 32 H 1.09001 * 109.47346 * 302.42705 * 1 2 3 33 33 H 1.08997 * 109.47007 * 62.43353 * 1 2 3 34 34 H 1.09006 * 110.36574 * 86.04009 * 4 2 1 35 35 H 1.09006 * 110.46047 * 323.76884 * 4 2 1 36 36 H 1.07999 * 119.92461 * 359.97438 * 9 8 6 37 37 H 1.07999 * 119.85021 * 180.29463 * 10 9 8 38 38 H 1.08003 * 119.92376 * 179.72177 * 11 10 9 39 39 H 1.08001 * 126.23994 * 359.92614 * 14 13 12 40 40 H 1.08002 * 125.48284 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.14508 * 359.96001 * 18 8 6 42 42 H 1.09002 * 109.87870 * 118.12749 * 19 5 4 43 43 H 1.08999 * 109.88399 * 239.29497 * 19 5 4 44 44 H 0.96998 * 120.00549 * 88.69871 * 22 20 19 45 45 H 0.96998 * 120.00185 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2420 -0.7740 6 6 4.4479 -1.5600 -1.5951 7 8 4.3364 -1.3969 -2.7944 8 6 5.7053 -2.1014 -1.0363 9 6 5.8934 -2.1488 0.3470 10 6 7.0646 -2.6589 0.8704 11 6 8.0622 -3.1149 0.0313 12 6 7.8894 -3.0686 -1.3536 13 6 8.9583 -3.5577 -2.2503 14 6 10.1557 -4.0757 -1.8746 15 7 10.8258 -4.3951 -2.9919 16 6 10.0909 -4.0944 -4.0257 17 8 8.9290 -3.5795 -3.6010 18 6 6.7074 -2.5603 -1.8885 19 6 3.4667 -1.2785 0.6952 20 6 2.0869 -0.8077 1.2019 21 1 1.4464 -1.6615 1.4229 22 7 2.2294 0.0497 2.3812 23 6 2.2015 -0.5002 3.6351 24 1 2.0747 -1.5661 3.7545 25 6 2.3360 0.3123 4.7525 26 7 2.4909 1.6112 4.6069 27 14 2.2971 -0.4377 6.4629 28 1 3.4030 -1.4197 6.5979 29 1 2.4609 0.6342 7.4773 30 1 0.9972 -1.1243 6.6729 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3634 0.5511 0.8674 33 1 -0.3633 0.4756 -0.9110 34 1 2.1554 -0.1715 -2.0839 35 1 1.4528 -1.6703 -1.4044 36 1 5.1193 -1.7889 1.0085 37 1 7.2030 -2.6976 1.9407 38 1 8.9778 -3.5087 0.4473 39 1 10.5052 -4.2060 -0.8611 40 1 10.3715 -4.2410 -5.0583 41 1 6.5685 -2.5225 -2.9589 42 1 3.6616 -2.2954 1.0357 43 1 4.2431 -0.6072 1.0622 44 1 2.3435 1.0070 2.2740 45 1 2.5853 2.1789 5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939456922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 55.099815 kcal Electronic energy + Delta-G solvation = -28749.030422 eV Core-core repulsion = 24734.507385 eV Total energy + Delta-G solvation = -4014.523037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.55652 -40.51540 -38.73109 -37.51366 -35.06158 -34.25922 -33.38002 -32.20299 -31.27577 -30.82676 -28.98376 -27.80965 -26.45721 -24.67651 -23.75532 -23.65084 -22.48428 -21.74913 -21.16442 -20.08890 -19.78048 -18.22016 -17.25839 -17.06033 -16.85335 -16.46726 -16.07683 -15.75442 -15.12456 -14.82546 -14.76593 -14.30627 -14.10758 -13.98211 -13.67368 -13.57306 -13.25428 -13.17748 -12.94046 -12.79483 -12.45085 -12.35729 -11.75681 -11.69525 -11.62227 -11.45111 -11.19084 -11.00501 -10.91424 -10.69710 -10.48201 -10.36476 -10.16509 -10.06900 -9.92653 -9.77451 -9.20908 -9.05588 -8.45461 -8.36226 -7.19199 -5.93706 -3.25505 0.34596 0.83434 1.66055 2.37051 2.41583 2.90664 3.05867 3.33320 3.38906 3.40047 3.75449 3.91054 4.29337 4.42901 4.48679 4.69125 4.71811 4.79957 4.89489 5.00246 5.10612 5.13450 5.16178 5.31909 5.44114 5.47046 5.52424 5.59501 5.69570 5.74995 5.76855 5.77556 5.91431 5.96951 6.05962 6.10407 6.13919 6.16393 6.21208 6.25431 6.36562 6.43905 6.54077 6.62751 6.75003 7.36296 7.53733 7.64220 8.21495 8.24173 9.35431 9.88116 10.23004 11.27746 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.002724 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.918674 B =10276.740021 C =12161.982813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.113 3.887 5 N -0.605 5.605 6 C 0.570 3.430 7 O -0.549 6.549 8 C -0.125 4.125 9 C -0.107 4.107 10 C -0.120 4.120 11 C -0.073 4.073 12 C -0.037 4.037 13 C 0.010 3.990 14 C -0.029 4.029 15 N -0.486 5.486 16 C 0.169 3.831 17 O -0.197 6.197 18 C -0.042 4.042 19 C 0.058 3.942 20 C 0.175 3.825 21 H 0.071 0.929 22 N -0.710 5.710 23 C -0.253 4.253 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.177 0.823 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.187 0.813 40 H 0.251 0.749 41 H 0.139 0.861 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 -9.452 -12.495 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.337 5.337 6 C 0.360 3.640 7 O -0.428 6.428 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.138 4.138 11 C -0.091 4.091 12 C -0.038 4.038 13 C -0.044 4.044 14 C -0.168 4.168 15 N -0.214 5.214 16 C -0.056 4.056 17 O -0.083 6.083 18 C -0.061 4.061 19 C -0.067 4.067 20 C 0.062 3.938 21 H 0.089 0.911 22 N -0.349 5.349 23 C -0.384 4.384 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.738 3.262 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.194 0.806 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.204 0.796 40 H 0.267 0.733 41 H 0.157 0.843 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.261 -9.700 -13.059 18.719 hybrid contribution -0.316 0.161 0.933 0.998 sum 8.945 -9.539 -12.126 17.834 Atomic orbital electron populations 1.21594 0.93722 1.01867 1.01834 1.22663 0.96465 0.99848 0.94485 0.89743 1.22313 0.82208 0.98335 0.98085 1.48353 1.12145 1.65371 1.07849 1.17890 0.82604 0.77993 0.85530 1.90743 1.82181 1.55195 1.14725 1.19819 0.95199 1.03818 0.93982 1.23319 0.99236 0.94568 0.95346 1.21160 0.93137 0.98941 1.00549 1.21246 0.99455 0.97454 0.90960 1.17461 0.91803 1.03356 0.91163 1.21445 0.97605 1.05099 0.80205 1.23287 0.91429 1.03137 0.98984 1.70345 1.32377 1.20449 0.98247 1.28138 0.79681 0.96708 1.01053 1.84509 1.38860 1.63497 1.21426 1.21310 0.90677 0.93466 1.00611 1.23845 1.03612 1.01210 0.78050 1.21324 0.91385 0.94021 0.87029 0.91068 1.42368 1.86241 1.06247 1.00069 1.19193 1.43494 0.92579 0.83133 0.90944 1.24770 1.02045 0.95409 0.98004 1.69644 1.55492 1.02863 1.29415 0.86281 0.77953 0.77872 0.84106 1.21082 1.21652 1.21122 0.92769 0.91348 0.93154 0.90667 0.91391 0.80635 0.84238 0.85004 0.79619 0.73303 0.84334 0.91107 0.89667 0.77792 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.30 37.16 0.35 -1.41 16 2 C -0.11 -1.69 3.27 -88.47 -0.29 -1.98 16 3 H 0.08 1.33 8.01 -51.93 -0.42 0.92 16 4 C 0.11 1.61 6.40 -2.53 -0.02 1.59 16 5 N -0.61 -9.34 3.33 -176.41 -0.59 -9.92 16 6 C 0.57 9.43 7.81 -12.32 -0.10 9.34 16 7 O -0.55 -10.45 16.59 5.32 0.09 -10.37 16 8 C -0.13 -1.81 5.87 -105.02 -0.62 -2.43 16 9 C -0.11 -1.39 8.61 -39.11 -0.34 -1.73 16 10 C -0.12 -1.30 10.02 -39.70 -0.40 -1.70 16 11 C -0.07 -0.73 9.57 -39.11 -0.37 -1.11 16 12 C -0.04 -0.44 5.87 -105.03 -0.62 -1.06 16 13 C 0.01 0.11 7.07 -36.54 -0.26 -0.15 16 14 C -0.03 -0.30 11.29 -17.43 -0.20 -0.50 16 15 N -0.49 -5.27 11.27 -14.68 -0.17 -5.43 16 16 C 0.17 1.46 13.22 52.14 0.69 2.15 16 17 O -0.20 -2.19 10.58 4.25 0.05 -2.14 16 18 C -0.04 -0.57 9.27 -38.77 -0.36 -0.93 16 19 C 0.06 0.90 4.63 -3.06 -0.01 0.89 16 20 C 0.18 2.98 3.08 -66.09 -0.20 2.78 16 21 H 0.07 1.22 7.96 -51.93 -0.41 0.80 16 22 N -0.71 -15.46 5.15 -51.65 -0.27 -15.73 16 23 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 26 N -0.93 -25.88 13.06 55.49 0.72 -25.15 16 27 Si 0.91 20.65 29.55 -169.99 -5.02 15.63 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.05 0.67 8.11 -51.93 -0.42 0.24 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 35 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.18 2.36 2.72 -58.70 -0.16 2.20 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.13 0.93 7.02 -52.48 -0.37 0.57 16 39 H 0.19 1.41 7.29 -52.49 -0.38 1.02 16 40 H 0.25 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 1.96 7.55 -52.48 -0.40 1.56 16 42 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 43 H 0.09 1.41 6.60 -51.93 -0.34 1.07 16 44 H 0.39 9.19 7.76 -40.82 -0.32 8.88 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 375.92 15.07 5.66 5.66 Total: -1.00 -31.40 375.92 -8.14 -39.55 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.64 Total: 10.74 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.99 Total: -2.84 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.29 Total: -56.24 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.13 Total: -12.51 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.40 -8.14 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939456922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.645 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds