Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.63995 * 2 1 4 4 C 1.54323 * 110.72248 * 123.13549 * 2 1 3 5 5 N 1.47019 * 107.27269 * 140.73244 * 4 2 1 6 6 C 1.34777 * 125.64940 * 181.02394 * 5 4 2 7 7 O 1.21614 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.47469 * 120.00060 * 180.02562 * 6 5 4 9 9 C 1.36229 * 126.36271 * 180.02562 * 8 6 5 10 10 O 1.34277 * 107.11832 * 179.71112 * 9 8 6 11 11 C 1.34474 * 108.17349 * 0.42338 * 10 9 8 12 12 C 1.47870 * 125.49678 * 179.83401 * 11 10 9 13 13 C 1.39549 * 120.13727 * 359.68527 * 12 11 10 14 14 C 1.37964 * 119.85459 * 179.69626 * 13 12 11 15 15 C 1.38353 * 120.14484 * 0.28821 * 14 13 12 16 16 C 1.38357 * 120.28350 * 359.97438 * 15 14 13 17 17 C 1.37962 * 120.14500 * 0.02562 * 16 15 14 18 18 N 1.30900 * 109.01771 * 359.56592 * 11 10 9 19 19 C 1.47419 * 108.70160 * 1.29288 * 5 4 2 20 20 C 1.55123 * 104.72329 * 335.54966 * 19 5 4 21 21 H 1.08998 * 110.91119 * 155.27650 * 20 19 5 22 22 N 1.46506 * 111.19227 * 279.19346 * 20 19 5 23 23 C 1.36939 * 119.99803 * 267.18668 * 22 20 19 24 24 H 1.07999 * 120.00203 * 359.97438 * 23 22 20 25 25 C 1.38807 * 119.99915 * 180.02562 * 23 22 20 26 26 N 1.31626 * 120.00194 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00263 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46892 * 89.99623 * 27 25 23 29 29 H 1.48499 * 109.47258 * 209.99590 * 27 25 23 30 30 H 1.48494 * 109.46894 * 329.99880 * 27 25 23 31 31 H 1.09000 * 109.47248 * 298.31111 * 1 2 3 32 32 H 1.08994 * 109.47502 * 58.31851 * 1 2 3 33 33 H 1.08998 * 109.47209 * 178.31612 * 1 2 3 34 34 H 1.09004 * 109.88095 * 21.32092 * 4 2 1 35 35 H 1.08996 * 110.01546 * 260.22921 * 4 2 1 36 36 H 1.07998 * 126.44524 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.07578 * 359.97438 * 13 12 11 38 38 H 1.08003 * 119.93574 * 180.25842 * 14 13 12 39 39 H 1.07998 * 119.85924 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.92440 * 179.97438 * 16 15 14 41 41 H 1.07995 * 120.07414 * 179.97438 * 17 16 15 42 42 H 1.08999 * 110.37192 * 94.48195 * 19 5 4 43 43 H 1.09007 * 110.36585 * 216.80001 * 19 5 4 44 44 H 0.96997 * 119.99845 * 87.18915 * 22 20 19 45 45 H 0.96997 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 3.2470 -1.5460 0.7428 6 6 3.9957 -2.3765 1.4953 7 8 3.7204 -2.5497 2.6672 8 6 5.1486 -3.0753 0.8977 9 6 5.9883 -3.9389 1.5342 10 8 6.8916 -4.3505 0.6300 11 6 6.6202 -3.7451 -0.5397 12 6 7.3811 -3.9223 -1.7951 13 6 8.4878 -4.7717 -1.8297 14 6 9.1898 -4.9375 -3.0057 15 6 8.8023 -4.2593 -4.1477 16 6 7.7093 -3.4115 -4.1187 17 6 6.9988 -3.2369 -2.9490 18 7 5.5702 -2.9780 -0.3894 19 6 3.4706 -1.2412 -0.6821 20 6 2.0829 -0.7949 -1.2123 21 1 2.1886 -0.1516 -2.0858 22 7 1.2343 -1.9506 -1.5136 23 6 1.2126 -2.4727 -2.7793 24 1 1.8208 -2.0323 -3.5556 25 6 0.4083 -3.5673 -3.0649 26 7 -0.3333 -4.1037 -2.1189 27 14 0.3781 -4.2791 -4.7917 28 1 1.4220 -5.3284 -4.9128 29 1 -0.9558 -4.8748 -5.0584 30 1 0.6443 -3.2001 -5.7766 31 1 -0.3634 0.4874 0.9047 32 1 -0.3634 0.5397 -0.8744 33 1 -0.3633 -1.0272 -0.0302 34 1 1.3140 -1.4753 1.5782 35 1 2.3706 -0.1010 2.0010 36 1 5.9347 -4.2395 2.5701 37 1 8.7914 -5.3015 -0.9389 38 1 10.0440 -5.5978 -3.0350 39 1 9.3554 -4.3922 -5.0657 40 1 7.4122 -2.8846 -5.0134 41 1 6.1461 -2.5746 -2.9276 42 1 4.1970 -0.4355 -0.7883 43 1 3.8103 -2.1314 -1.2117 44 1 0.6878 -2.3458 -0.8164 45 1 -0.8951 -4.8689 -2.3184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939557387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 40.220653 kcal Electronic energy + Delta-G solvation = -29618.422592 eV Core-core repulsion = 25603.254346 eV Total energy + Delta-G solvation = -4015.168246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.35706 -39.61367 -39.16794 -37.49253 -34.90857 -33.80579 -32.55315 -32.16616 -31.15458 -30.42492 -29.20240 -27.69459 -26.49343 -24.20731 -23.80008 -23.58652 -22.59352 -21.58082 -21.18396 -19.47345 -19.18757 -17.82057 -17.40143 -16.83671 -16.80656 -16.27515 -15.86162 -15.63427 -15.19135 -14.88441 -14.51792 -14.12030 -13.95534 -13.66332 -13.62229 -13.49094 -13.09045 -12.98974 -12.91630 -12.59259 -12.10255 -11.91089 -11.69901 -11.56250 -11.33343 -11.27015 -11.08879 -10.90976 -10.79988 -10.60078 -10.30633 -10.15665 -9.92168 -9.87525 -9.85363 -9.59990 -9.17519 -8.97431 -8.46086 -8.13593 -6.97406 -5.78439 -3.07405 0.51129 1.18977 1.36891 2.31580 2.45968 3.23079 3.41923 3.46731 3.48798 3.51471 3.69094 3.78964 4.56579 4.63583 4.68362 4.75857 4.86165 4.91204 5.10322 5.19068 5.26129 5.29406 5.37721 5.41295 5.61013 5.62625 5.66777 5.71122 5.80612 5.83467 5.92017 5.97907 6.07571 6.21028 6.24152 6.28850 6.30551 6.31159 6.41316 6.45628 6.66249 6.67911 6.69970 6.95500 7.01052 7.49062 7.68418 7.89858 8.39290 8.42047 9.51030 10.06974 10.41728 11.43862 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.004496 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.425094 B = 6226.597791 C = 8550.116903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.583 5.583 6 C 0.611 3.389 7 O -0.553 6.553 8 C -0.049 4.049 9 C 0.007 3.993 10 O -0.193 6.193 11 C 0.230 3.770 12 C -0.016 4.016 13 C -0.091 4.091 14 C -0.124 4.124 15 C -0.102 4.102 16 C -0.120 4.120 17 C -0.065 4.065 18 N -0.430 5.430 19 C 0.070 3.930 20 C 0.169 3.831 21 H 0.074 0.926 22 N -0.707 5.707 23 C -0.240 4.240 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.930 5.930 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.232 0.768 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.722 3.500 1.265 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.313 5.313 6 C 0.398 3.602 7 O -0.433 6.433 8 C -0.171 4.171 9 C -0.067 4.067 10 O -0.079 6.079 11 C 0.025 3.975 12 C -0.017 4.017 13 C -0.110 4.110 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.138 4.138 17 C -0.084 4.084 18 N -0.160 5.160 19 C -0.055 4.055 20 C 0.057 3.943 21 H 0.091 0.909 22 N -0.348 5.348 23 C -0.371 4.371 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.071 0.929 43 H 0.122 0.878 44 H 0.221 0.779 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.306 3.675 1.260 17.737 hybrid contribution 0.049 -1.155 -0.058 1.158 sum 17.355 2.519 1.202 17.578 Atomic orbital electron populations 1.21601 0.93436 1.03420 1.00480 1.22546 0.97106 0.98508 0.95397 0.90327 1.22011 0.87426 0.94410 0.96735 1.48074 1.28271 1.42317 1.12603 1.16311 0.80614 0.78591 0.84658 1.90782 1.71372 1.65408 1.15723 1.21741 1.00923 1.03945 0.90448 1.25273 0.88726 0.97121 0.95587 1.84387 1.47734 1.56437 1.19371 1.23879 0.94158 0.93183 0.86264 1.17283 0.95648 1.01130 0.87672 1.21215 0.93931 0.96946 0.98952 1.21042 1.00334 1.00393 0.92477 1.21372 0.96569 0.95779 0.98387 1.21167 0.95579 0.99064 0.97953 1.21306 0.99119 0.97327 0.90667 1.71180 1.08632 1.19746 1.16394 1.23695 1.00027 1.02054 0.79754 1.21441 0.88797 0.89852 0.94244 0.90856 1.42349 1.49594 1.32505 1.10310 1.19220 1.20917 1.09637 0.87357 0.91038 1.24724 0.99581 0.98769 0.97503 1.69662 1.30910 1.25505 1.31708 0.86234 0.76873 0.79065 0.84276 1.21804 1.21844 1.20679 0.93810 0.92302 0.90962 0.91235 0.92138 0.75189 0.85234 0.85360 0.85553 0.84908 0.83926 0.92866 0.87809 0.77859 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.81 37.15 0.33 -1.80 16 2 C -0.12 -1.85 3.40 -88.79 -0.30 -2.15 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 2.00 6.45 -3.07 -0.02 1.98 16 5 N -0.58 -10.97 3.32 -171.64 -0.57 -11.54 16 6 C 0.61 11.89 7.85 -12.50 -0.10 11.79 16 7 O -0.55 -11.57 17.22 5.26 0.09 -11.48 16 8 C -0.05 -0.85 6.81 -83.08 -0.57 -1.42 16 9 C 0.01 0.09 11.94 30.01 0.36 0.45 16 10 O -0.19 -2.68 10.45 5.31 0.06 -2.63 16 11 C 0.23 3.48 7.88 -14.01 -0.11 3.37 16 12 C -0.02 -0.21 5.87 -104.98 -0.62 -0.83 16 13 C -0.09 -0.95 9.71 -39.19 -0.38 -1.33 16 14 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 15 C -0.10 -0.88 10.04 -39.50 -0.40 -1.28 16 16 C -0.12 -1.19 10.03 -39.64 -0.40 -1.59 16 17 C -0.07 -0.81 9.68 -39.19 -0.38 -1.19 16 18 N -0.43 -7.40 8.02 -8.26 -0.07 -7.47 16 19 C 0.07 1.29 5.86 -2.42 -0.01 1.28 16 20 C 0.17 3.22 3.47 -65.66 -0.23 2.99 16 21 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 22 N -0.71 -16.97 4.58 -51.24 -0.23 -17.21 16 23 C -0.24 -6.40 9.96 -15.06 -0.15 -6.55 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 27 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.40 6.36 -51.93 -0.33 1.07 16 34 H 0.07 1.30 7.82 -51.93 -0.41 0.89 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.23 2.42 8.06 -52.49 -0.42 2.00 16 37 H 0.13 1.17 7.89 -52.49 -0.41 0.75 16 38 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 41 H 0.14 1.88 7.82 -52.49 -0.41 1.47 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.16 6.13 -51.93 -0.32 1.84 16 44 H 0.39 10.10 6.34 -40.82 -0.26 9.84 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -32.89 380.37 -8.67 -41.56 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.91 Total: 11.16 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -3.47 Total: 1.89 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.15 Total: -63.31 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.15 Total: -14.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.89 -8.67 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.782 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds