Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.63995 * 2 1 4 4 C 1.54323 * 110.72248 * 123.13549 * 2 1 3 5 5 N 1.47019 * 107.27269 * 140.73244 * 4 2 1 6 6 C 1.34777 * 125.64940 * 181.02394 * 5 4 2 7 7 O 1.21614 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.47469 * 120.00060 * 180.02562 * 6 5 4 9 9 C 1.36229 * 126.36271 * 180.02562 * 8 6 5 10 10 O 1.34277 * 107.11832 * 179.71112 * 9 8 6 11 11 C 1.34474 * 108.17349 * 0.42338 * 10 9 8 12 12 C 1.47870 * 125.49678 * 179.83401 * 11 10 9 13 13 C 1.39549 * 120.13727 * 359.68527 * 12 11 10 14 14 C 1.37964 * 119.85459 * 179.69626 * 13 12 11 15 15 C 1.38353 * 120.14484 * 0.28821 * 14 13 12 16 16 C 1.38357 * 120.28350 * 359.97438 * 15 14 13 17 17 C 1.37962 * 120.14500 * 0.02562 * 16 15 14 18 18 N 1.30900 * 109.01771 * 359.56592 * 11 10 9 19 19 C 1.47419 * 108.70160 * 1.29288 * 5 4 2 20 20 C 1.55123 * 104.72329 * 335.54966 * 19 5 4 21 21 H 1.08998 * 110.91119 * 155.27650 * 20 19 5 22 22 N 1.46506 * 111.19227 * 279.19346 * 20 19 5 23 23 C 1.36939 * 119.99803 * 267.18668 * 22 20 19 24 24 H 1.07999 * 120.00203 * 359.97438 * 23 22 20 25 25 C 1.38807 * 119.99915 * 180.02562 * 23 22 20 26 26 N 1.31626 * 120.00194 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00263 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46892 * 89.99623 * 27 25 23 29 29 H 1.48499 * 109.47258 * 209.99590 * 27 25 23 30 30 H 1.48494 * 109.46894 * 329.99880 * 27 25 23 31 31 H 1.09000 * 109.47248 * 298.31111 * 1 2 3 32 32 H 1.08994 * 109.47502 * 58.31851 * 1 2 3 33 33 H 1.08998 * 109.47209 * 178.31612 * 1 2 3 34 34 H 1.09004 * 109.88095 * 21.32092 * 4 2 1 35 35 H 1.08996 * 110.01546 * 260.22921 * 4 2 1 36 36 H 1.07998 * 126.44524 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.07578 * 359.97438 * 13 12 11 38 38 H 1.08003 * 119.93574 * 180.25842 * 14 13 12 39 39 H 1.07998 * 119.85924 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.92440 * 179.97438 * 16 15 14 41 41 H 1.07995 * 120.07414 * 179.97438 * 17 16 15 42 42 H 1.08999 * 110.37192 * 94.48195 * 19 5 4 43 43 H 1.09007 * 110.36585 * 216.80001 * 19 5 4 44 44 H 0.96997 * 119.99845 * 87.18915 * 22 20 19 45 45 H 0.96997 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 3.2470 -1.5460 0.7428 6 6 3.9957 -2.3765 1.4953 7 8 3.7204 -2.5497 2.6672 8 6 5.1486 -3.0753 0.8977 9 6 5.9883 -3.9389 1.5342 10 8 6.8916 -4.3505 0.6300 11 6 6.6202 -3.7451 -0.5397 12 6 7.3811 -3.9223 -1.7951 13 6 8.4878 -4.7717 -1.8297 14 6 9.1898 -4.9375 -3.0057 15 6 8.8023 -4.2593 -4.1477 16 6 7.7093 -3.4115 -4.1187 17 6 6.9988 -3.2369 -2.9490 18 7 5.5702 -2.9780 -0.3894 19 6 3.4706 -1.2412 -0.6821 20 6 2.0829 -0.7949 -1.2123 21 1 2.1886 -0.1516 -2.0858 22 7 1.2343 -1.9506 -1.5136 23 6 1.2126 -2.4727 -2.7793 24 1 1.8208 -2.0323 -3.5556 25 6 0.4083 -3.5673 -3.0649 26 7 -0.3333 -4.1037 -2.1189 27 14 0.3781 -4.2791 -4.7917 28 1 1.4220 -5.3284 -4.9128 29 1 -0.9558 -4.8748 -5.0584 30 1 0.6443 -3.2001 -5.7766 31 1 -0.3634 0.4874 0.9047 32 1 -0.3634 0.5397 -0.8744 33 1 -0.3633 -1.0272 -0.0302 34 1 1.3140 -1.4753 1.5782 35 1 2.3706 -0.1010 2.0010 36 1 5.9347 -4.2395 2.5701 37 1 8.7914 -5.3015 -0.9389 38 1 10.0440 -5.5978 -3.0350 39 1 9.3554 -4.3922 -5.0657 40 1 7.4122 -2.8846 -5.0134 41 1 6.1461 -2.5746 -2.9276 42 1 4.1970 -0.4355 -0.7883 43 1 3.8103 -2.1314 -1.2117 44 1 0.6878 -2.3458 -0.8164 45 1 -0.8951 -4.8689 -2.3184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939557387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 18.943070 kcal Electronic energy + Delta-G solvation = -29619.345257 eV Core-core repulsion = 25603.254346 eV Total energy + Delta-G solvation = -4016.090911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.51644 -41.08070 -39.96166 -39.01583 -36.13197 -35.64479 -33.87847 -33.35963 -32.23385 -31.92699 -30.26856 -29.36997 -27.85305 -25.83079 -25.21473 -24.72711 -23.60466 -22.90977 -22.21661 -20.72914 -20.66791 -19.46490 -18.84164 -18.05118 -18.00376 -17.37414 -17.30156 -16.71862 -16.52725 -16.29632 -15.79292 -15.71045 -15.38888 -14.81611 -14.68098 -14.61546 -14.46535 -14.37962 -14.08057 -13.90851 -13.58879 -13.42322 -13.06614 -12.92263 -12.81518 -12.53993 -12.41360 -12.29521 -12.18388 -12.11898 -12.01210 -11.68444 -11.50554 -11.38870 -11.30786 -10.91752 -10.89266 -9.94994 -9.76053 -9.36589 -8.94940 -7.91981 -5.19462 -0.43426 0.18806 0.42073 1.21079 1.36661 1.46244 1.47610 1.55709 1.86274 2.16251 2.56745 2.65486 2.84678 3.36998 3.39722 3.65457 3.72319 3.90751 3.96004 3.98391 4.02372 4.09814 4.18933 4.34725 4.41665 4.43758 4.47216 4.58096 4.61816 4.67052 4.73249 4.77339 4.89592 4.91604 4.99496 5.03818 5.08524 5.22039 5.28200 5.39020 5.45301 5.48452 5.53414 5.54372 5.60683 5.94655 6.28909 6.29832 6.43466 6.95115 7.35976 8.11027 8.34040 9.31609 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.004496 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.425094 B = 6226.597791 C = 8550.116903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 H 0.118 0.882 4 C 0.114 3.886 5 N -0.590 5.590 6 C 0.603 3.397 7 O -0.577 6.577 8 C -0.091 4.091 9 C 0.031 3.969 10 O -0.186 6.186 11 C 0.232 3.768 12 C -0.046 4.046 13 C -0.093 4.093 14 C -0.120 4.120 15 C -0.093 4.093 16 C -0.125 4.125 17 C -0.086 4.086 18 N -0.459 5.459 19 C 0.084 3.916 20 C 0.159 3.841 21 H 0.086 0.914 22 N -0.718 5.718 23 C -0.229 4.229 24 H 0.081 0.919 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 0.965 3.035 28 H -0.295 1.295 29 H -0.300 1.300 30 H -0.262 1.262 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.265 0.735 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.414 4.138 0.047 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.119 4.119 3 H 0.136 0.864 4 C -0.008 4.008 5 N -0.319 5.319 6 C 0.392 3.608 7 O -0.459 6.459 8 C -0.212 4.212 9 C -0.043 4.043 10 O -0.072 6.072 11 C 0.026 3.974 12 C -0.047 4.047 13 C -0.112 4.112 14 C -0.137 4.137 15 C -0.111 4.111 16 C -0.143 4.143 17 C -0.105 4.105 18 N -0.188 5.188 19 C -0.041 4.041 20 C 0.048 3.952 21 H 0.104 0.896 22 N -0.357 5.357 23 C -0.361 4.361 24 H 0.099 0.901 25 C -0.267 4.267 26 N -0.623 5.623 27 Si 0.795 3.205 28 H -0.223 1.223 29 H -0.227 1.227 30 H -0.187 1.187 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.281 0.719 37 H 0.160 0.840 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.205 0.795 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.031 4.378 0.021 20.503 hybrid contribution -0.642 -1.328 0.300 1.506 sum 19.388 3.049 0.322 19.629 Atomic orbital electron populations 1.21521 0.93542 1.01253 1.01981 1.22528 0.96875 0.99646 0.92857 0.86431 1.22114 0.86542 0.94269 0.97867 1.48211 1.28541 1.42461 1.12690 1.16653 0.81111 0.78473 0.84562 1.90743 1.72321 1.66278 1.16581 1.21701 1.01887 1.06212 0.91370 1.25864 0.87052 0.94929 0.96419 1.84416 1.47467 1.56137 1.19140 1.24387 0.93628 0.92304 0.87068 1.17490 0.97089 1.03201 0.86920 1.21452 0.93115 0.96242 1.00402 1.21472 1.00612 1.00098 0.91533 1.21810 0.95566 0.94048 0.99700 1.21429 0.95840 0.99512 0.97524 1.21297 0.99443 0.97922 0.91848 1.71111 1.09875 1.21291 1.16521 1.23461 0.99708 1.01573 0.79362 1.21722 0.88549 0.88776 0.96133 0.89605 1.42494 1.50234 1.33807 1.09122 1.19639 1.19197 1.08759 0.88507 0.90079 1.25476 1.00358 0.99951 1.00928 1.69834 1.32553 1.26228 1.33646 0.85245 0.76011 0.78460 0.80745 1.22257 1.22690 1.18693 0.91016 0.92115 0.94812 0.93556 0.89991 0.71936 0.84035 0.82021 0.82189 0.83250 0.86023 0.90533 0.90428 0.79482 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.81 71.98 0.63 -3.33 16 2 C -0.10 -3.04 3.40 -9.61 -0.03 -3.08 16 3 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.11 3.89 6.45 86.73 0.56 4.45 16 5 N -0.59 -22.46 3.32 -815.18 -2.71 -25.18 16 6 C 0.60 24.05 7.85 86.68 0.68 24.73 16 7 O -0.58 -24.64 17.22 -4.08 -0.07 -24.71 16 8 C -0.09 -3.26 6.81 40.50 0.28 -2.98 16 9 C 0.03 0.87 11.94 67.35 0.80 1.68 16 10 O -0.19 -5.07 10.45 -3.90 -0.04 -5.11 16 11 C 0.23 7.10 7.88 87.38 0.69 7.79 16 12 C -0.05 -1.18 5.87 -20.09 -0.12 -1.30 16 13 C -0.09 -1.77 9.71 22.52 0.22 -1.55 16 14 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 15 C -0.09 -1.28 10.04 22.33 0.22 -1.06 16 16 C -0.13 -2.30 10.03 22.23 0.22 -2.07 16 17 C -0.09 -2.14 9.68 22.52 0.22 -1.92 16 18 N -0.46 -16.31 8.02 -294.25 -2.36 -18.67 16 19 C 0.08 3.10 5.86 86.93 0.51 3.61 16 20 C 0.16 5.98 3.47 46.46 0.16 6.14 16 21 H 0.09 3.03 8.09 -2.39 -0.02 3.01 16 22 N -0.72 -35.22 4.58 -316.03 -1.45 -36.66 16 23 C -0.23 -12.38 9.96 84.03 0.84 -11.54 16 24 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 25 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 26 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 27 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 28 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 30 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.03 1.33 6.36 -2.39 -0.02 1.32 16 34 H 0.05 1.79 7.82 -2.39 -0.02 1.77 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.27 5.17 8.06 -2.91 -0.02 5.15 16 37 H 0.14 2.27 7.89 -2.91 -0.02 2.24 16 38 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.12 3.44 7.82 -2.91 -0.02 3.42 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.08 3.33 6.13 -2.38 -0.01 3.32 16 44 H 0.37 20.32 6.34 -92.71 -0.59 19.73 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -74.78 380.37 2.69 -72.09 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.44 Total: 35.72 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.57 Total: 14.28 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -6.23 Total: -140.57 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.11 Total: -29.82 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -74.78 2.69 -72.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.032 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds