Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21614 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.47465 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.36237 * 126.36276 * 179.71638 * 8 6 5 10 10 O 1.34281 * 107.11524 * 179.83539 * 9 8 6 11 11 C 1.34480 * 108.17458 * 0.42395 * 10 9 8 12 12 C 1.47872 * 125.48911 * 179.71519 * 11 10 9 13 13 C 1.39546 * 120.13808 * 179.74396 * 12 11 10 14 14 C 1.37967 * 119.85431 * 179.76272 * 13 12 11 15 15 C 1.38355 * 120.14069 * 0.51540 * 14 13 12 16 16 C 1.38347 * 120.28571 * 359.73358 * 15 14 13 17 17 C 1.37968 * 120.14660 * 0.02562 * 16 15 14 18 18 N 1.30900 * 109.01496 * 359.73151 * 11 10 9 19 19 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 20 20 C 1.54371 * 107.28954 * 1.09430 * 19 5 4 21 21 H 1.09000 * 110.69938 * 263.79651 * 20 19 5 22 22 N 1.46495 * 110.75708 * 140.50781 * 20 19 5 23 23 C 1.36938 * 120.00366 * 91.48243 * 22 20 19 24 24 H 1.08001 * 119.99728 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00190 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99900 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00077 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46937 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47068 * 120.00125 * 27 25 23 30 30 H 1.48492 * 109.47553 * 240.00218 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 34 34 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 35 35 H 1.09001 * 110.36928 * 36.24245 * 4 2 1 36 36 H 1.07998 * 126.44373 * 359.96368 * 9 8 6 37 37 H 1.08004 * 120.07323 * 0.02562 * 13 12 11 38 38 H 1.07996 * 119.93095 * 180.25045 * 14 13 12 39 39 H 1.07998 * 119.85277 * 179.76358 * 15 14 13 40 40 H 1.08005 * 119.92637 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.07476 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.88343 * 120.47841 * 19 5 4 43 43 H 1.09000 * 109.88049 * 241.48392 * 19 5 4 44 44 H 0.96999 * 120.00014 * 271.47886 * 22 20 19 45 45 H 0.97000 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3014 -1.4963 2.7999 8 6 5.7434 -1.9826 1.0305 9 6 6.8578 -2.3254 1.7352 10 8 7.8070 -2.6475 0.8416 11 6 7.2909 -2.4972 -0.3911 12 6 8.0106 -2.7437 -1.6590 13 6 7.3624 -2.5565 -2.8805 14 6 8.0410 -2.7835 -4.0601 15 6 9.3582 -3.2061 -4.0335 16 6 10.0049 -3.3986 -2.8258 17 6 9.3391 -3.1704 -1.6392 18 7 6.0488 -2.0971 -0.2875 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8073 -1.2026 21 1 1.4468 -1.6625 -1.4217 22 7 2.2286 0.0507 -2.3815 23 6 2.1999 -0.4985 -3.6356 24 1 2.0726 -1.5643 -3.7556 25 6 2.3344 0.3145 -4.7526 26 7 2.4900 1.6133 -4.6063 27 14 2.2959 -0.4347 -6.4633 28 1 2.1119 -1.9044 -6.3560 29 1 1.1695 0.1497 -7.2345 30 1 3.5752 -0.1452 -7.1595 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 -1.0276 0.0125 33 1 -0.3634 0.5030 -0.8962 34 1 2.1560 -0.1714 2.0837 35 1 1.4520 -1.6700 1.4029 36 1 6.9583 -2.3379 2.8104 37 1 6.3329 -2.2305 -2.9025 38 1 7.5418 -2.6351 -5.0062 39 1 9.8838 -3.3861 -4.9597 40 1 11.0334 -3.7282 -2.8118 41 1 9.8452 -3.3206 -0.6970 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2891 -1.0394 44 1 2.3432 1.0078 -2.2738 45 1 2.5843 2.1814 -5.3869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939557388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = 34.746287 kcal Electronic energy + Delta-G solvation = -29298.793121 eV Core-core repulsion = 25283.387488 eV Total energy + Delta-G solvation = -4015.405632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43416 -39.69578 -39.13983 -37.52269 -34.97607 -34.02912 -32.60478 -32.25931 -31.11073 -30.67387 -29.25574 -27.48413 -26.64453 -24.30919 -23.89659 -23.52665 -22.49227 -21.34403 -21.15885 -19.90560 -19.50790 -17.80881 -17.13106 -16.98582 -16.89551 -16.38742 -15.93612 -15.67197 -15.29039 -14.87016 -14.64933 -14.12804 -13.88247 -13.60366 -13.58225 -13.48123 -13.15645 -13.06512 -13.02684 -12.59337 -12.39101 -12.09675 -11.65247 -11.49097 -11.39763 -11.26949 -11.13368 -11.03031 -10.85543 -10.59631 -10.48218 -10.22023 -10.08615 -9.93049 -9.90329 -9.70991 -9.13411 -8.96927 -8.51511 -8.23386 -7.05342 -5.82520 -3.12450 0.49643 1.22809 1.28019 2.26430 2.39103 3.10204 3.38508 3.38911 3.45411 3.47332 3.69270 3.72342 4.51080 4.60763 4.63351 4.78809 4.81105 4.95155 5.04037 5.20598 5.22953 5.25150 5.31039 5.38198 5.55622 5.60124 5.64001 5.68457 5.78614 5.84785 5.89464 5.92607 5.97403 6.03889 6.22500 6.25775 6.29081 6.31047 6.37273 6.50149 6.58884 6.65083 6.67457 6.73102 6.97117 7.42955 7.65913 7.75933 8.25878 8.35030 9.46866 10.01347 10.36608 11.39670 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004827 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.951471 B = 5799.269345 C = 9499.419745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.610 3.390 7 O -0.553 6.553 8 C -0.055 4.055 9 C 0.007 3.993 10 O -0.193 6.193 11 C 0.235 3.765 12 C -0.021 4.021 13 C -0.062 4.062 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.126 4.126 17 C -0.091 4.091 18 N -0.431 5.431 19 C 0.085 3.915 20 C 0.174 3.826 21 H 0.067 0.933 22 N -0.709 5.709 23 C -0.242 4.242 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.930 5.930 27 Si 0.904 3.096 28 H -0.279 1.279 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.232 0.768 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.274 -9.434 8.019 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.324 5.324 6 C 0.397 3.603 7 O -0.433 6.433 8 C -0.177 4.177 9 C -0.067 4.067 10 O -0.079 6.079 11 C 0.030 3.970 12 C -0.023 4.023 13 C -0.081 4.081 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.144 4.144 17 C -0.111 4.111 18 N -0.160 5.160 19 C -0.041 4.041 20 C 0.062 3.938 21 H 0.085 0.915 22 N -0.349 5.349 23 C -0.373 4.373 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.577 5.577 27 Si 0.735 3.265 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.221 0.779 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.812 -9.389 7.996 16.401 hybrid contribution 0.602 -0.134 -0.331 0.700 sum 11.414 -9.523 7.665 16.725 Atomic orbital electron populations 1.21597 0.93809 1.01652 1.01917 1.22673 0.96356 0.99832 0.94723 0.89848 1.22329 0.82258 0.98271 0.98001 1.48306 1.11444 1.63781 1.08917 1.16373 0.81265 0.77645 0.84976 1.90784 1.82810 1.56097 1.13597 1.21757 0.97124 1.09577 0.89239 1.25279 0.85873 0.99601 0.95981 1.84403 1.40790 1.66308 1.16437 1.23910 0.88634 1.00148 0.84339 1.17284 0.93248 1.05024 0.86701 1.21398 1.01185 0.95408 0.90147 1.21230 0.94678 0.99219 0.98459 1.21394 0.94888 0.97465 0.98180 1.21031 1.00176 1.01254 0.91955 1.21187 0.92861 0.97883 0.99157 1.71264 1.11544 1.15271 1.17914 1.23402 1.02286 1.02142 0.76227 1.21321 0.91935 0.93677 0.86857 0.91474 1.42337 1.86259 1.06177 1.00121 1.19286 1.42283 0.92562 0.83170 0.90975 1.24730 1.02543 0.95406 0.97808 1.69673 1.56348 1.02823 1.28902 0.86163 0.77226 0.78219 0.84858 1.20466 1.21883 1.21825 0.93236 0.92844 0.91313 0.90766 0.91358 0.75205 0.83579 0.84714 0.85521 0.85390 0.85319 0.90155 0.91762 0.77925 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.29 37.16 0.35 -1.53 16 2 C -0.12 -1.87 3.27 -88.48 -0.29 -2.16 16 3 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 4 C 0.11 1.76 6.38 -2.53 -0.02 1.74 16 5 N -0.59 -10.32 3.33 -171.75 -0.57 -10.89 16 6 C 0.61 10.75 7.85 -12.50 -0.10 10.65 16 7 O -0.55 -10.41 17.14 5.27 0.09 -10.32 16 8 C -0.06 -0.89 6.82 -83.08 -0.57 -1.45 16 9 C 0.01 0.08 11.94 30.01 0.36 0.44 16 10 O -0.19 -2.50 10.45 5.29 0.06 -2.44 16 11 C 0.24 3.43 7.88 -14.01 -0.11 3.32 16 12 C -0.02 -0.28 5.87 -104.98 -0.62 -0.89 16 13 C -0.06 -0.84 9.68 -39.19 -0.38 -1.21 16 14 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 15 C -0.10 -0.94 10.04 -39.50 -0.40 -1.33 16 16 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 17 C -0.09 -0.95 9.71 -39.19 -0.38 -1.33 16 18 N -0.43 -7.16 8.42 -8.26 -0.07 -7.23 16 19 C 0.08 1.58 5.28 -3.04 -0.02 1.57 16 20 C 0.17 3.34 3.08 -66.07 -0.20 3.13 16 21 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 22 N -0.71 -16.77 5.15 -51.63 -0.27 -17.04 16 23 C -0.24 -6.33 9.96 -15.06 -0.15 -6.48 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 26 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 27 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 35 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 36 H 0.23 2.08 8.06 -52.49 -0.42 1.65 16 37 H 0.15 2.22 7.82 -52.48 -0.41 1.81 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.13 1.12 7.89 -52.49 -0.41 0.71 16 42 H 0.08 1.69 7.52 -51.93 -0.39 1.30 16 43 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 44 H 0.39 9.85 7.76 -40.82 -0.32 9.53 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -31.37 384.62 -8.78 -40.14 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.10 Total: 10.98 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -3.41 Total: 0.86 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.18 Total: -61.45 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.15 Total: -12.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.37 -8.78 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.891 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds