Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21614 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.47465 * 120.00104 * 180.02562 * 6 5 4 9 9 C 1.36237 * 126.36276 * 179.71638 * 8 6 5 10 10 O 1.34281 * 107.11524 * 179.83539 * 9 8 6 11 11 C 1.34480 * 108.17458 * 0.42395 * 10 9 8 12 12 C 1.47872 * 125.48911 * 179.71519 * 11 10 9 13 13 C 1.39546 * 120.13808 * 179.74396 * 12 11 10 14 14 C 1.37967 * 119.85431 * 179.76272 * 13 12 11 15 15 C 1.38355 * 120.14069 * 0.51540 * 14 13 12 16 16 C 1.38347 * 120.28571 * 359.73358 * 15 14 13 17 17 C 1.37968 * 120.14660 * 0.02562 * 16 15 14 18 18 N 1.30900 * 109.01496 * 359.73151 * 11 10 9 19 19 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 20 20 C 1.54371 * 107.28954 * 1.09430 * 19 5 4 21 21 H 1.09000 * 110.69938 * 263.79651 * 20 19 5 22 22 N 1.46495 * 110.75708 * 140.50781 * 20 19 5 23 23 C 1.36938 * 120.00366 * 91.48243 * 22 20 19 24 24 H 1.08001 * 119.99728 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00190 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99900 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00077 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46937 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47068 * 120.00125 * 27 25 23 30 30 H 1.48492 * 109.47553 * 240.00218 * 27 25 23 31 31 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 32 32 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 33 33 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 34 34 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 35 35 H 1.09001 * 110.36928 * 36.24245 * 4 2 1 36 36 H 1.07998 * 126.44373 * 359.96368 * 9 8 6 37 37 H 1.08004 * 120.07323 * 0.02562 * 13 12 11 38 38 H 1.07996 * 119.93095 * 180.25045 * 14 13 12 39 39 H 1.07998 * 119.85277 * 179.76358 * 15 14 13 40 40 H 1.08005 * 119.92637 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.07476 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.88343 * 120.47841 * 19 5 4 43 43 H 1.09000 * 109.88049 * 241.48392 * 19 5 4 44 44 H 0.96999 * 120.00014 * 271.47886 * 22 20 19 45 45 H 0.97000 * 119.99593 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3014 -1.4963 2.7999 8 6 5.7434 -1.9826 1.0305 9 6 6.8578 -2.3254 1.7352 10 8 7.8070 -2.6475 0.8416 11 6 7.2909 -2.4972 -0.3911 12 6 8.0106 -2.7437 -1.6590 13 6 7.3624 -2.5565 -2.8805 14 6 8.0410 -2.7835 -4.0601 15 6 9.3582 -3.2061 -4.0335 16 6 10.0049 -3.3986 -2.8258 17 6 9.3391 -3.1704 -1.6392 18 7 6.0488 -2.0971 -0.2875 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8073 -1.2026 21 1 1.4468 -1.6625 -1.4217 22 7 2.2286 0.0507 -2.3815 23 6 2.1999 -0.4985 -3.6356 24 1 2.0726 -1.5643 -3.7556 25 6 2.3344 0.3145 -4.7526 26 7 2.4900 1.6133 -4.6063 27 14 2.2959 -0.4347 -6.4633 28 1 2.1119 -1.9044 -6.3560 29 1 1.1695 0.1497 -7.2345 30 1 3.5752 -0.1452 -7.1595 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 -1.0276 0.0125 33 1 -0.3634 0.5030 -0.8962 34 1 2.1560 -0.1714 2.0837 35 1 1.4520 -1.6700 1.4029 36 1 6.9583 -2.3379 2.8104 37 1 6.3329 -2.2305 -2.9025 38 1 7.5418 -2.6351 -5.0062 39 1 9.8838 -3.3861 -4.9597 40 1 11.0334 -3.7282 -2.8118 41 1 9.8452 -3.3206 -0.6970 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2891 -1.0394 44 1 2.3432 1.0078 -2.2738 45 1 2.5843 2.1814 -5.3869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939557388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 14.742613 kcal Electronic energy + Delta-G solvation = -29299.660545 eV Core-core repulsion = 25283.387488 eV Total energy + Delta-G solvation = -4016.273057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53016 -41.09628 -39.98720 -38.98589 -36.14640 -35.83449 -33.92566 -33.38530 -32.47907 -31.94642 -30.29148 -29.17255 -27.88432 -25.95381 -25.14159 -24.68485 -23.49581 -22.72407 -22.22501 -21.38537 -20.72324 -19.10844 -18.97953 -18.14178 -18.01381 -17.41604 -17.29216 -16.85278 -16.49689 -16.27635 -15.85956 -15.58170 -15.37115 -14.88186 -14.64067 -14.62319 -14.54695 -14.40696 -14.10536 -13.93598 -13.77689 -13.49750 -13.01866 -12.87366 -12.85969 -12.56388 -12.44037 -12.29561 -12.12659 -12.08642 -12.03867 -11.77242 -11.68336 -11.52768 -11.34530 -10.91721 -10.90894 -9.97690 -9.78530 -9.37816 -9.04806 -7.92936 -5.22632 -0.45191 0.16536 0.39301 1.18534 1.34865 1.48995 1.49620 1.59498 1.80126 2.10700 2.56490 2.64279 2.81966 3.28912 3.39314 3.64524 3.69691 3.80737 3.90666 3.96449 4.00099 4.17479 4.21277 4.33977 4.36035 4.43036 4.43510 4.45533 4.57916 4.61330 4.64115 4.72749 4.88527 4.90546 4.97877 5.06197 5.10477 5.16254 5.21408 5.33075 5.36980 5.45511 5.48238 5.52428 5.55582 5.92142 6.26065 6.28486 6.37682 6.90064 7.34860 8.05257 8.30624 9.30367 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004827 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.951471 B = 5799.269345 C = 9499.419745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 H 0.070 0.930 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.609 3.391 7 O -0.567 6.567 8 C -0.098 4.098 9 C 0.040 3.960 10 O -0.184 6.184 11 C 0.233 3.767 12 C -0.044 4.044 13 C -0.088 4.088 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.117 4.117 17 C -0.088 4.088 18 N -0.466 5.466 19 C 0.109 3.891 20 C 0.170 3.830 21 H 0.071 0.929 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.077 0.923 25 C -0.068 4.068 26 N -0.968 5.968 27 Si 0.966 3.034 28 H -0.265 1.265 29 H -0.295 1.295 30 H -0.293 1.293 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.270 0.730 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.374 0.626 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.002 -11.296 8.744 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.125 4.125 3 H 0.088 0.912 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.398 3.602 7 O -0.448 6.448 8 C -0.219 4.219 9 C -0.034 4.034 10 O -0.069 6.069 11 C 0.028 3.972 12 C -0.045 4.045 13 C -0.107 4.107 14 C -0.148 4.148 15 C -0.110 4.110 16 C -0.134 4.134 17 C -0.107 4.107 18 N -0.196 5.196 19 C -0.017 4.017 20 C 0.059 3.941 21 H 0.089 0.911 22 N -0.357 5.357 23 C -0.369 4.369 24 H 0.095 0.905 25 C -0.260 4.260 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.190 1.190 29 H -0.222 1.222 30 H -0.221 1.221 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.286 0.714 37 H 0.130 0.870 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.166 0.834 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.207 0.793 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.524 -11.291 8.755 19.000 hybrid contribution 0.167 0.390 -0.496 0.653 sum 12.692 -10.901 8.259 18.658 Atomic orbital electron populations 1.21550 0.91875 1.02702 1.02153 1.22570 0.97842 0.98675 0.93404 0.91179 1.22431 0.81518 0.98968 0.97585 1.48337 1.12421 1.64142 1.08113 1.16582 0.81688 0.77102 0.84818 1.90758 1.83226 1.56926 1.13875 1.21764 0.97737 1.12674 0.89712 1.25964 0.84350 0.96037 0.97075 1.84432 1.40494 1.66006 1.15983 1.24221 0.88279 0.99501 0.85248 1.17437 0.94569 1.06825 0.85680 1.21243 1.00208 0.97552 0.91722 1.21378 0.95961 0.99734 0.97706 1.21781 0.93744 0.95492 0.99953 1.21493 1.01606 0.99412 0.90915 1.21476 0.91556 0.96787 1.00895 1.71202 1.13009 1.16674 1.18665 1.22874 1.00757 1.00688 0.77340 1.21487 0.92289 0.93711 0.86613 0.91145 1.42432 1.86414 1.06016 1.00843 1.19617 1.40256 0.92739 0.84268 0.90544 1.25470 1.03407 0.95808 1.01330 1.69824 1.58472 1.04105 1.29403 0.85177 0.76643 0.78133 0.80468 1.18966 1.22232 1.22056 0.90593 0.91453 0.93378 0.89873 0.89401 0.71402 0.86982 0.84387 0.82300 0.81599 0.83369 0.93116 0.92621 0.79320 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.29 71.98 0.67 -2.75 16 2 C -0.10 -3.39 3.27 -9.40 -0.03 -3.42 16 3 H 0.07 2.46 8.01 -2.39 -0.02 2.44 16 4 C 0.12 3.49 6.38 86.85 0.55 4.05 16 5 N -0.60 -21.11 3.33 -815.53 -2.71 -23.82 16 6 C 0.61 21.54 7.85 86.68 0.68 22.22 16 7 O -0.57 -20.87 17.14 -4.07 -0.07 -20.94 16 8 C -0.10 -3.19 6.82 40.50 0.28 -2.91 16 9 C 0.04 0.96 11.94 67.35 0.80 1.76 16 10 O -0.18 -4.53 10.45 -4.00 -0.04 -4.57 16 11 C 0.23 6.93 7.88 87.38 0.69 7.61 16 12 C -0.04 -1.16 5.87 -20.10 -0.12 -1.27 16 13 C -0.09 -2.50 9.68 22.52 0.22 -2.29 16 14 C -0.13 -2.93 10.03 22.23 0.22 -2.70 16 15 C -0.09 -1.46 10.04 22.32 0.22 -1.24 16 16 C -0.12 -1.68 10.03 22.23 0.22 -1.45 16 17 C -0.09 -1.65 9.71 22.52 0.22 -1.43 16 18 N -0.47 -16.23 8.42 -294.25 -2.48 -18.71 16 19 C 0.11 4.27 5.28 86.75 0.46 4.73 16 20 C 0.17 6.66 3.08 46.20 0.14 6.80 16 21 H 0.07 2.73 7.99 -2.39 -0.02 2.71 16 22 N -0.72 -35.33 5.15 -317.26 -1.63 -36.96 16 23 C -0.24 -12.75 9.96 84.03 0.84 -11.91 16 24 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 25 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 26 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 27 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 35 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 36 H 0.27 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.11 3.86 7.82 -2.91 -0.02 3.84 16 38 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.15 2.15 7.89 -2.91 -0.02 2.12 16 42 H 0.05 2.29 7.52 -2.39 -0.02 2.27 16 43 H 0.06 2.24 7.74 -2.39 -0.02 2.22 16 44 H 0.37 20.03 7.76 -92.71 -0.72 19.31 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.85 384.62 2.21 -68.64 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.30 Total: 34.72 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.53 Total: 12.48 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -6.54 Total: -137.40 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.11 Total: -25.51 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.85 2.21 -68.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.385 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds