Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.91652 * 2 1 4 4 C 1.54903 * 111.00947 * 236.09017 * 2 1 3 5 5 N 1.47422 * 104.83507 * 204.92094 * 4 2 1 6 6 C 1.34773 * 125.64848 * 204.09494 * 5 4 2 7 7 O 1.21614 * 120.00087 * 359.97438 * 6 5 4 8 8 C 1.47464 * 120.00287 * 179.97438 * 6 5 4 9 9 C 1.36234 * 126.36840 * 179.97438 * 8 6 5 10 10 O 1.34273 * 107.12019 * 179.75667 * 9 8 6 11 11 C 1.34483 * 108.17546 * 0.41817 * 10 9 8 12 12 C 1.47866 * 125.49481 * 179.82869 * 11 10 9 13 13 C 1.39553 * 120.13997 * 359.70129 * 12 11 10 14 14 C 1.37964 * 119.85346 * 180.02562 * 13 12 11 15 15 C 1.38355 * 120.14529 * 0.02562 * 14 13 12 16 16 C 1.38354 * 120.28305 * 0.02562 * 15 14 13 17 17 C 1.37961 * 120.14606 * 359.97438 * 16 15 14 18 18 N 1.30896 * 109.01326 * 359.57162 * 11 10 9 19 19 C 1.47020 * 108.70296 * 24.35566 * 5 4 2 20 20 C 1.54331 * 107.26666 * 358.58774 * 19 5 4 21 21 H 1.09006 * 110.85188 * 219.67553 * 20 19 5 22 22 N 1.46495 * 110.67052 * 96.51963 * 20 19 5 23 23 C 1.36940 * 119.99938 * 91.41338 * 22 20 19 24 24 H 1.08005 * 119.99678 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00613 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99177 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00192 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47280 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47017 * 120.00246 * 27 25 23 30 30 H 1.48504 * 109.46888 * 239.99623 * 27 25 23 31 31 H 1.09006 * 109.47155 * 182.45158 * 1 2 3 32 32 H 1.08996 * 109.47822 * 302.45470 * 1 2 3 33 33 H 1.09003 * 109.46887 * 62.45807 * 1 2 3 34 34 H 1.08993 * 110.36815 * 86.07842 * 4 2 1 35 35 H 1.09004 * 110.36851 * 323.75847 * 4 2 1 36 36 H 1.07998 * 126.43896 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.07402 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.93018 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.86067 * 179.72348 * 15 14 13 40 40 H 1.08003 * 119.92626 * 180.02562 * 16 15 14 41 41 H 1.08004 * 120.07150 * 179.97438 * 17 16 15 42 42 H 1.08993 * 109.88608 * 118.13195 * 19 5 4 43 43 H 1.08997 * 109.88109 * 239.29862 * 19 5 4 44 44 H 0.96998 * 120.00527 * 271.41897 * 22 20 19 45 45 H 0.97001 * 119.99662 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8067 -1.2001 5 7 3.4272 -1.2432 -0.7730 6 6 4.4477 -1.5617 -1.5936 7 8 4.3004 -1.5008 -2.7992 8 6 5.7431 -1.9842 -1.0296 9 6 6.8554 -2.3341 -1.7341 10 8 7.8081 -2.6443 -0.8402 11 6 7.2906 -2.4977 0.3924 12 6 8.0103 -2.7434 1.6605 13 6 9.3388 -3.1704 1.6408 14 6 10.0045 -3.3984 2.8275 15 6 9.3577 -3.2050 4.0352 16 6 8.0405 -2.7828 4.0615 17 6 7.3635 -2.5513 2.8819 18 7 6.0488 -2.0972 0.2886 19 6 3.4657 -1.2794 0.6963 20 6 2.0861 -0.8078 1.2024 21 1 2.1920 -0.1697 2.0798 22 7 1.2244 -1.9549 1.4990 23 6 1.2040 -2.4878 2.7603 24 1 1.8229 -2.0622 3.5364 25 6 0.3880 -3.5750 3.0414 26 7 -0.3666 -4.0932 2.0956 27 14 0.3597 -4.3015 4.7621 28 1 1.2908 -3.5426 5.6352 29 1 -1.0168 -4.2161 5.3129 30 1 0.7829 -5.7238 4.7058 31 1 -0.3634 -1.0268 0.0440 32 1 -0.3634 0.5514 0.8671 33 1 -0.3633 0.4752 -0.9112 34 1 2.1561 -0.1723 -2.0835 35 1 1.4520 -1.6705 -1.4022 36 1 6.9538 -2.3536 -2.8094 37 1 9.8444 -3.3229 0.6988 38 1 11.0328 -3.7285 2.8138 39 1 9.8819 -3.3892 4.9614 40 1 7.5413 -2.6333 5.0075 41 1 6.3350 -2.2221 2.9038 42 1 3.6600 -2.2962 1.0371 43 1 4.2423 -0.6084 1.0633 44 1 0.6684 -2.3369 0.8021 45 1 -0.9366 -4.8532 2.2919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939557389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = 18.361941 kcal Electronic energy + Delta-G solvation = -29334.493017 eV Core-core repulsion = 25318.376906 eV Total energy + Delta-G solvation = -4016.116111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.52458 -41.11423 -39.96833 -39.05872 -36.14265 -35.68106 -33.90309 -33.36991 -32.23076 -31.93045 -30.27873 -29.36270 -27.87894 -25.83354 -25.19858 -24.72432 -23.64722 -22.96089 -22.19944 -20.78093 -20.64725 -19.49017 -18.85745 -18.07178 -18.00958 -17.36952 -17.27372 -16.68447 -16.46217 -16.32344 -15.91492 -15.71809 -15.40095 -14.88268 -14.67234 -14.60286 -14.48734 -14.38020 -14.16720 -13.91592 -13.57189 -13.37699 -13.06917 -12.88786 -12.81919 -12.55143 -12.42214 -12.35285 -12.15983 -12.07204 -12.00641 -11.74948 -11.49255 -11.46502 -11.32682 -10.94384 -10.90071 -9.95611 -9.76957 -9.36814 -9.00838 -7.92018 -5.20042 -0.43952 0.17371 0.41477 1.20084 1.35819 1.48325 1.48945 1.58526 1.83530 2.12448 2.57589 2.64005 2.83937 3.33574 3.40089 3.64913 3.70121 3.89343 3.93088 3.98056 4.01842 4.06943 4.18896 4.34603 4.40730 4.43871 4.46676 4.56148 4.60916 4.65525 4.71233 4.72795 4.88510 4.91703 5.01084 5.02552 5.08166 5.21430 5.24422 5.33481 5.39222 5.47196 5.53451 5.55179 5.60941 5.93996 6.29022 6.29571 6.40845 6.91417 7.36730 8.09797 8.33890 9.31592 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008066 B = 0.004126 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3470.339121 B = 6784.370724 C = 9495.779396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 H 0.109 0.891 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.606 3.394 7 O -0.572 6.572 8 C -0.094 4.094 9 C 0.037 3.963 10 O -0.185 6.185 11 C 0.234 3.766 12 C -0.045 4.045 13 C -0.091 4.091 14 C -0.119 4.119 15 C -0.093 4.093 16 C -0.126 4.126 17 C -0.086 4.086 18 N -0.463 5.463 19 C 0.106 3.894 20 C 0.161 3.839 21 H 0.082 0.918 22 N -0.720 5.720 23 C -0.233 4.233 24 H 0.080 0.920 25 C -0.072 4.072 26 N -0.970 5.970 27 Si 0.966 3.034 28 H -0.262 1.262 29 H -0.295 1.295 30 H -0.301 1.301 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.267 0.733 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.120 0.880 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.375 0.625 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.685 6.352 -0.678 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.119 4.119 3 H 0.127 0.873 4 C -0.008 4.008 5 N -0.324 5.324 6 C 0.395 3.605 7 O -0.454 6.454 8 C -0.215 4.215 9 C -0.037 4.037 10 O -0.071 6.071 11 C 0.028 3.972 12 C -0.046 4.046 13 C -0.110 4.110 14 C -0.137 4.137 15 C -0.111 4.111 16 C -0.144 4.144 17 C -0.106 4.106 18 N -0.192 5.192 19 C -0.019 4.019 20 C 0.050 3.950 21 H 0.100 0.900 22 N -0.360 5.360 23 C -0.364 4.364 24 H 0.098 0.902 25 C -0.264 4.264 26 N -0.621 5.621 27 Si 0.796 3.204 28 H -0.186 1.186 29 H -0.222 1.222 30 H -0.229 1.229 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.283 0.717 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.165 0.835 41 H 0.138 0.862 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.209 0.791 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.271 6.483 -0.638 22.246 hybrid contribution -0.486 -1.134 -0.216 1.252 sum 20.785 5.349 -0.855 21.479 Atomic orbital electron populations 1.21477 0.93046 1.01672 1.02030 1.22616 0.97059 0.99188 0.93082 0.87316 1.22353 0.81698 0.98129 0.98592 1.48306 1.11882 1.63812 1.08426 1.16648 0.81937 0.77117 0.84847 1.90754 1.83470 1.57006 1.14177 1.21680 0.97408 1.12486 0.89887 1.25904 0.84445 0.96297 0.97053 1.84430 1.40130 1.66396 1.16095 1.24304 0.88210 0.99428 0.85286 1.17463 0.94444 1.06898 0.85799 1.21459 0.91807 0.96965 1.00800 1.21477 1.01606 0.99484 0.91088 1.21801 0.94081 0.95491 0.99722 1.21414 0.95640 0.99494 0.97867 1.21281 1.00244 0.97657 0.91406 1.71137 1.12637 1.17054 1.18402 1.22925 1.00088 1.01210 0.77703 1.21519 0.88180 0.88908 0.96382 0.90043 1.42584 1.49207 1.34468 1.09747 1.19671 1.18769 1.09214 0.88790 0.90189 1.25465 1.00084 0.99949 1.00948 1.69827 1.31574 1.27023 1.33627 0.85172 0.77123 0.77607 0.80499 1.18588 1.22236 1.22860 0.94181 0.92149 0.90925 0.89506 0.93066 0.71732 0.83836 0.81979 0.82300 0.83546 0.86223 0.93332 0.90918 0.79146 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.98 71.98 0.65 -3.26 16 2 C -0.10 -3.12 3.52 -9.40 -0.03 -3.16 16 3 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.11 3.92 6.34 86.85 0.55 4.47 16 5 N -0.59 -22.10 3.33 -815.64 -2.71 -24.81 16 6 C 0.61 22.60 7.85 86.68 0.68 23.28 16 7 O -0.57 -22.73 17.14 -4.08 -0.07 -22.80 16 8 C -0.09 -3.10 6.82 40.50 0.28 -2.82 16 9 C 0.04 0.92 11.94 67.35 0.80 1.73 16 10 O -0.18 -4.54 10.45 -3.95 -0.04 -4.58 16 11 C 0.23 6.62 7.88 87.38 0.69 7.31 16 12 C -0.04 -1.07 5.87 -20.10 -0.12 -1.19 16 13 C -0.09 -1.58 9.71 22.52 0.22 -1.36 16 14 C -0.12 -1.50 10.03 22.23 0.22 -1.28 16 15 C -0.09 -1.20 10.04 22.33 0.22 -0.97 16 16 C -0.13 -2.25 10.03 22.23 0.22 -2.02 16 17 C -0.09 -2.08 9.68 22.52 0.22 -1.86 16 18 N -0.46 -15.47 8.43 -294.25 -2.48 -17.95 16 19 C 0.11 4.03 5.27 86.73 0.46 4.48 16 20 C 0.16 6.13 3.39 46.19 0.16 6.28 16 21 H 0.08 2.97 8.09 -2.38 -0.02 2.95 16 22 N -0.72 -34.93 4.46 -317.30 -1.41 -36.35 16 23 C -0.23 -12.46 9.96 84.03 0.84 -11.62 16 24 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 25 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 26 N -0.97 -59.03 13.06 21.65 0.28 -58.74 16 27 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 29 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 30 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 31 H 0.04 1.54 6.26 -2.38 -0.01 1.53 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.71 8.04 -2.39 -0.02 2.69 16 35 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 36 H 0.27 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.14 2.00 7.89 -2.91 -0.02 1.98 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.12 3.34 7.82 -2.91 -0.02 3.31 16 42 H 0.05 2.18 7.66 -2.39 -0.02 2.17 16 43 H 0.07 2.57 7.62 -2.39 -0.02 2.55 16 44 H 0.37 19.86 6.24 -92.71 -0.58 19.28 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -72.19 381.01 2.55 -69.64 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.44 Total: 33.54 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.52 Total: 14.38 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -6.32 Total: -137.85 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.11 Total: -27.38 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.19 2.55 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.997 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds