Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.63844 * 2 1 4 4 C 1.54324 * 110.72342 * 236.65841 * 2 1 3 5 5 N 1.47015 * 107.27460 * 219.44679 * 4 2 1 6 6 C 1.34777 * 125.64881 * 178.96382 * 5 4 2 7 7 O 1.21612 * 120.00101 * 0.02562 * 6 5 4 8 8 C 1.47464 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.36241 * 126.36345 * 179.71633 * 8 6 5 10 10 O 1.34274 * 107.12084 * 179.83921 * 9 8 6 11 11 C 1.34486 * 108.17006 * 0.42022 * 10 9 8 12 12 C 1.47873 * 125.49001 * 179.69178 * 11 10 9 13 13 C 1.39541 * 120.13986 * 179.76588 * 12 11 10 14 14 C 1.37974 * 119.85331 * 179.74818 * 13 12 11 15 15 C 1.38353 * 120.14010 * 0.53762 * 14 13 12 16 16 C 1.38343 * 120.28727 * 359.73714 * 15 14 13 17 17 C 1.37969 * 120.14540 * 359.97438 * 16 15 14 18 18 N 1.30900 * 109.01739 * 359.73513 * 11 10 9 19 19 C 1.47422 * 108.70527 * 358.93986 * 5 4 2 20 20 C 1.54916 * 104.83050 * 24.13184 * 19 5 4 21 21 H 1.08994 * 111.03723 * 81.07776 * 20 19 5 22 22 N 1.46499 * 111.00526 * 204.91657 * 20 19 5 23 23 C 1.36931 * 120.00122 * 267.19412 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.08993 * 109.47580 * 296.85970 * 1 2 3 32 32 H 1.08998 * 109.47057 * 56.86259 * 1 2 3 33 33 H 1.09008 * 109.47056 * 176.85626 * 1 2 3 34 34 H 1.08999 * 109.88301 * 338.86971 * 4 2 1 35 35 H 1.09003 * 109.87832 * 99.87257 * 4 2 1 36 36 H 1.07996 * 126.43555 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.07524 * 0.02562 * 13 12 11 38 38 H 1.08001 * 119.92742 * 180.29452 * 14 13 12 39 39 H 1.07996 * 119.85236 * 179.76264 * 15 14 13 40 40 H 1.08001 * 119.92780 * 180.02562 * 16 15 14 41 41 H 1.08006 * 120.07385 * 180.02562 * 17 16 15 42 42 H 1.08996 * 110.37226 * 265.29392 * 19 5 4 43 43 H 1.08994 * 110.37138 * 142.96439 * 19 5 4 44 44 H 0.97001 * 119.99790 * 87.18929 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2445 -1.5520 -0.7362 6 6 3.9922 -2.3864 -1.4854 7 8 3.7188 -2.5613 -2.6574 8 6 5.1424 -3.0865 -0.8843 9 6 5.9780 -3.9576 -1.5160 10 8 6.8861 -4.3600 -0.6125 11 6 6.6104 -3.7558 0.5569 12 6 7.3687 -3.9323 1.8142 13 6 6.9858 -3.2436 2.9658 14 6 7.6944 -3.4167 4.1370 15 6 8.7890 -4.2623 4.1683 16 6 9.1771 -4.9436 3.0285 17 6 8.4735 -4.7839 1.8524 18 7 5.5622 -2.9870 0.4031 19 6 3.4633 -1.2486 0.6897 20 6 2.0789 -0.7934 1.2152 21 1 1.4448 -1.6507 1.4408 22 7 2.2214 0.0737 2.3874 23 6 2.1866 -0.4651 3.6458 24 1 2.0546 -1.5293 3.7742 25 6 2.3210 0.3565 4.7566 26 7 2.4824 1.6534 4.6001 27 14 2.2814 -0.3794 6.4730 28 1 2.4513 0.7001 7.4785 29 1 0.9785 -1.0580 6.6907 30 1 3.3828 -1.3654 6.6145 31 1 -0.3634 0.4643 0.9167 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0262 -0.0564 34 1 1.3131 -1.4785 -1.5750 35 1 2.3717 -0.1060 -1.9985 36 1 5.9218 -4.2649 -2.5498 37 1 6.1341 -2.5800 2.9416 38 1 7.3962 -2.8879 5.0303 39 1 9.3425 -4.3914 5.0865 40 1 10.0322 -5.6025 3.0595 41 1 8.7773 -5.3166 0.9634 42 1 4.1931 -0.4466 0.7994 43 1 3.7960 -2.1405 1.2207 44 1 2.3404 1.0294 2.2721 45 1 2.5767 2.2276 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939557390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = 36.183126 kcal Electronic energy + Delta-G solvation = -29282.063023 eV Core-core repulsion = 25266.719697 eV Total energy + Delta-G solvation = -4015.343326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46074 -39.70502 -39.15724 -37.52744 -35.01115 -34.03684 -32.61806 -32.26793 -31.12611 -30.67734 -29.27441 -27.49110 -26.64413 -24.31906 -23.89228 -23.55130 -22.51305 -21.34453 -21.21000 -19.86523 -19.52629 -17.83249 -17.17425 -16.98175 -16.92358 -16.39781 -15.92708 -15.70760 -15.32826 -14.88489 -14.56093 -14.10214 -13.91292 -13.60883 -13.58119 -13.54636 -13.08922 -13.06926 -12.91824 -12.69615 -12.67534 -11.94668 -11.66565 -11.58565 -11.42085 -11.28055 -11.10954 -11.02713 -10.83783 -10.60947 -10.47804 -10.22025 -10.08491 -9.93972 -9.86799 -9.71247 -9.15047 -8.96464 -8.53264 -8.25631 -7.04850 -5.82545 -3.12447 0.47589 1.21145 1.26211 2.23886 2.36867 3.08639 3.37010 3.39929 3.45316 3.45843 3.67553 3.70214 4.49658 4.60937 4.62054 4.77382 4.79523 4.93856 5.04358 5.20252 5.21161 5.26210 5.29190 5.36216 5.53589 5.58079 5.63426 5.68747 5.77411 5.83603 5.87543 5.92455 5.97871 6.07930 6.20655 6.26510 6.28485 6.31417 6.35748 6.50408 6.55827 6.63323 6.70887 6.75870 6.93526 7.39961 7.65454 7.75083 8.25126 8.35185 9.46836 10.00987 10.36550 11.39496 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.004797 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.582624 B = 5836.075259 C = 9550.308210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.609 3.391 7 O -0.553 6.553 8 C -0.055 4.055 9 C 0.007 3.993 10 O -0.193 6.193 11 C 0.236 3.764 12 C -0.022 4.022 13 C -0.063 4.063 14 C -0.118 4.118 15 C -0.100 4.100 16 C -0.126 4.126 17 C -0.091 4.091 18 N -0.433 5.433 19 C 0.076 3.924 20 C 0.175 3.825 21 H 0.067 0.933 22 N -0.708 5.708 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.008 4.008 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.285 1.285 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.232 0.768 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.362 -11.601 -7.562 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.324 5.324 6 C 0.397 3.603 7 O -0.432 6.432 8 C -0.176 4.176 9 C -0.067 4.067 10 O -0.079 6.079 11 C 0.031 3.969 12 C -0.023 4.023 13 C -0.082 4.082 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.144 4.144 17 C -0.111 4.111 18 N -0.162 5.162 19 C -0.049 4.049 20 C 0.063 3.937 21 H 0.085 0.915 22 N -0.348 5.348 23 C -0.374 4.374 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.212 1.212 30 H -0.212 1.212 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.248 0.752 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.954 -11.428 -7.554 16.934 hybrid contribution 0.418 -0.393 0.316 0.655 sum 10.372 -11.822 -7.238 17.313 Atomic orbital electron populations 1.21659 0.93924 1.01486 1.02023 1.22550 0.96479 0.99840 0.94752 0.89752 1.22036 0.87113 0.94359 0.97086 1.48289 1.28834 1.42106 1.13190 1.16374 0.80548 0.78772 0.84651 1.90785 1.71184 1.65754 1.15511 1.21754 1.01351 1.03749 0.90757 1.25277 0.88547 0.97276 0.95595 1.84405 1.47205 1.56851 1.19436 1.23941 0.93958 0.92879 0.86138 1.17286 0.96019 1.01467 0.87566 1.21401 0.99375 0.96822 0.90573 1.21240 0.95407 0.98718 0.98208 1.21398 0.96428 0.95630 0.98436 1.21033 1.00297 1.00561 0.92518 1.21191 0.93931 0.97083 0.98858 1.71256 1.09377 1.19239 1.16342 1.23719 1.01368 1.02118 0.77727 1.21419 0.92159 0.93526 0.86635 0.91538 1.42258 1.86196 1.06187 1.00117 1.19191 1.42504 0.92607 0.83106 0.91110 1.24724 1.02487 0.95401 0.97800 1.69652 1.56151 1.02651 1.29351 0.86301 0.77917 0.77758 0.84396 1.21709 1.21246 1.21153 0.91274 0.93265 0.92951 0.91405 0.91774 0.75182 0.83575 0.84687 0.85508 0.85378 0.85305 0.91429 0.88967 0.77905 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.16 37.16 0.34 -1.60 16 2 C -0.12 -1.88 3.20 -88.78 -0.28 -2.16 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.12 1.82 6.46 -3.07 -0.02 1.80 16 5 N -0.59 -10.29 3.33 -171.78 -0.57 -10.86 16 6 C 0.61 10.64 7.85 -12.50 -0.10 10.55 16 7 O -0.55 -10.35 17.22 5.27 0.09 -10.26 16 8 C -0.05 -0.86 6.81 -83.08 -0.57 -1.43 16 9 C 0.01 0.09 11.94 30.01 0.36 0.44 16 10 O -0.19 -2.44 10.45 5.29 0.06 -2.38 16 11 C 0.24 3.37 7.88 -14.01 -0.11 3.26 16 12 C -0.02 -0.28 5.87 -104.98 -0.62 -0.90 16 13 C -0.06 -0.83 9.68 -39.19 -0.38 -1.21 16 14 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 15 C -0.10 -0.92 10.04 -39.50 -0.40 -1.31 16 16 C -0.13 -1.10 10.03 -39.64 -0.40 -1.49 16 17 C -0.09 -0.93 9.71 -39.19 -0.38 -1.31 16 18 N -0.43 -7.05 8.03 -8.26 -0.07 -7.12 16 19 C 0.08 1.42 5.83 -2.53 -0.01 1.40 16 20 C 0.18 3.38 3.16 -65.77 -0.21 3.17 16 21 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 22 N -0.71 -16.71 5.24 -51.35 -0.27 -16.98 16 23 C -0.24 -6.37 9.96 -15.06 -0.15 -6.52 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 27 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.72 8.06 -51.92 -0.42 0.30 16 34 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.23 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.15 2.19 7.82 -52.48 -0.41 1.78 16 38 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.09 7.89 -52.48 -0.41 0.68 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.80 6.15 -51.93 -0.32 1.48 16 44 H 0.39 9.74 7.76 -40.82 -0.32 9.42 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -31.11 383.70 -8.74 -39.85 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.04 Total: 11.02 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -3.42 Total: 0.67 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.18 Total: -61.12 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.15 Total: -12.65 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.11 -8.74 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.031 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds