Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.63844 * 2 1 4 4 C 1.54324 * 110.72342 * 236.65841 * 2 1 3 5 5 N 1.47015 * 107.27460 * 219.44679 * 4 2 1 6 6 C 1.34777 * 125.64881 * 178.96382 * 5 4 2 7 7 O 1.21612 * 120.00101 * 0.02562 * 6 5 4 8 8 C 1.47464 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.36241 * 126.36345 * 179.71633 * 8 6 5 10 10 O 1.34274 * 107.12084 * 179.83921 * 9 8 6 11 11 C 1.34486 * 108.17006 * 0.42022 * 10 9 8 12 12 C 1.47873 * 125.49001 * 179.69178 * 11 10 9 13 13 C 1.39541 * 120.13986 * 179.76588 * 12 11 10 14 14 C 1.37974 * 119.85331 * 179.74818 * 13 12 11 15 15 C 1.38353 * 120.14010 * 0.53762 * 14 13 12 16 16 C 1.38343 * 120.28727 * 359.73714 * 15 14 13 17 17 C 1.37969 * 120.14540 * 359.97438 * 16 15 14 18 18 N 1.30900 * 109.01739 * 359.73513 * 11 10 9 19 19 C 1.47422 * 108.70527 * 358.93986 * 5 4 2 20 20 C 1.54916 * 104.83050 * 24.13184 * 19 5 4 21 21 H 1.08994 * 111.03723 * 81.07776 * 20 19 5 22 22 N 1.46499 * 111.00526 * 204.91657 * 20 19 5 23 23 C 1.36931 * 120.00122 * 267.19412 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.08993 * 109.47580 * 296.85970 * 1 2 3 32 32 H 1.08998 * 109.47057 * 56.86259 * 1 2 3 33 33 H 1.09008 * 109.47056 * 176.85626 * 1 2 3 34 34 H 1.08999 * 109.88301 * 338.86971 * 4 2 1 35 35 H 1.09003 * 109.87832 * 99.87257 * 4 2 1 36 36 H 1.07996 * 126.43555 * 359.97438 * 9 8 6 37 37 H 1.08003 * 120.07524 * 0.02562 * 13 12 11 38 38 H 1.08001 * 119.92742 * 180.29452 * 14 13 12 39 39 H 1.07996 * 119.85236 * 179.76264 * 15 14 13 40 40 H 1.08001 * 119.92780 * 180.02562 * 16 15 14 41 41 H 1.08006 * 120.07385 * 180.02562 * 17 16 15 42 42 H 1.08996 * 110.37226 * 265.29392 * 19 5 4 43 43 H 1.08994 * 110.37138 * 142.96439 * 19 5 4 44 44 H 0.97001 * 119.99790 * 87.18929 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2445 -1.5520 -0.7362 6 6 3.9922 -2.3864 -1.4854 7 8 3.7188 -2.5613 -2.6574 8 6 5.1424 -3.0865 -0.8843 9 6 5.9780 -3.9576 -1.5160 10 8 6.8861 -4.3600 -0.6125 11 6 6.6104 -3.7558 0.5569 12 6 7.3687 -3.9323 1.8142 13 6 6.9858 -3.2436 2.9658 14 6 7.6944 -3.4167 4.1370 15 6 8.7890 -4.2623 4.1683 16 6 9.1771 -4.9436 3.0285 17 6 8.4735 -4.7839 1.8524 18 7 5.5622 -2.9870 0.4031 19 6 3.4633 -1.2486 0.6897 20 6 2.0789 -0.7934 1.2152 21 1 1.4448 -1.6507 1.4408 22 7 2.2214 0.0737 2.3874 23 6 2.1866 -0.4651 3.6458 24 1 2.0546 -1.5293 3.7742 25 6 2.3210 0.3565 4.7566 26 7 2.4824 1.6534 4.6001 27 14 2.2814 -0.3794 6.4730 28 1 2.4513 0.7001 7.4785 29 1 0.9785 -1.0580 6.6907 30 1 3.3828 -1.3654 6.6145 31 1 -0.3634 0.4643 0.9167 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0262 -0.0564 34 1 1.3131 -1.4785 -1.5750 35 1 2.3717 -0.1060 -1.9985 36 1 5.9218 -4.2649 -2.5498 37 1 6.1341 -2.5800 2.9416 38 1 7.3962 -2.8879 5.0303 39 1 9.3425 -4.3914 5.0865 40 1 10.0322 -5.6025 3.0595 41 1 8.7773 -5.3166 0.9634 42 1 4.1931 -0.4466 0.7994 43 1 3.7960 -2.1405 1.2207 44 1 2.3404 1.0294 2.2721 45 1 2.5767 2.2276 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939557390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = 16.619949 kcal Electronic energy + Delta-G solvation = -29282.911346 eV Core-core repulsion = 25266.719697 eV Total energy + Delta-G solvation = -4016.191649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53408 -41.10159 -39.98683 -38.98740 -36.15972 -35.84430 -33.92840 -33.38694 -32.48804 -31.94391 -30.29070 -29.17993 -27.89005 -25.93918 -25.14366 -24.69699 -23.49507 -22.75531 -22.25242 -21.32751 -20.74241 -19.15059 -18.96409 -18.12663 -18.02496 -17.40231 -17.32442 -16.87048 -16.48336 -16.25004 -15.83439 -15.55001 -15.35604 -14.84205 -14.64018 -14.57673 -14.48306 -14.39476 -14.28843 -14.03939 -13.93135 -13.33394 -13.06526 -12.91260 -12.82096 -12.56527 -12.43749 -12.29891 -12.20931 -12.08283 -12.02950 -11.82823 -11.65936 -11.42838 -11.36113 -10.91044 -10.87566 -9.97542 -9.80572 -9.38254 -9.03087 -7.92877 -5.22507 -0.45059 0.16589 0.39414 1.18222 1.34844 1.49292 1.51157 1.57422 1.79046 2.10656 2.56304 2.64210 2.82038 3.28350 3.38710 3.64743 3.69650 3.80351 3.95116 3.96676 4.00223 4.15827 4.17795 4.34104 4.36014 4.43250 4.43684 4.45878 4.56147 4.61218 4.61750 4.71700 4.88995 4.89746 4.97596 5.06320 5.10575 5.15200 5.22989 5.32525 5.37497 5.44717 5.45939 5.52757 5.54362 5.92222 6.26358 6.27552 6.37598 6.90266 7.35160 8.05072 8.31359 9.29763 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.004797 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.582624 B = 5836.075259 C = 9550.308210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 H 0.079 0.921 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.609 3.391 7 O -0.566 6.566 8 C -0.097 4.097 9 C 0.041 3.959 10 O -0.183 6.183 11 C 0.235 3.765 12 C -0.044 4.044 13 C -0.088 4.088 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.117 4.117 17 C -0.087 4.087 18 N -0.468 5.468 19 C 0.098 3.902 20 C 0.171 3.829 21 H 0.062 0.938 22 N -0.717 5.717 23 C -0.241 4.241 24 H 0.073 0.927 25 C -0.065 4.065 26 N -0.966 5.966 27 Si 0.966 3.034 28 H -0.296 1.296 29 H -0.280 1.280 30 H -0.276 1.276 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.271 0.729 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -13.975 -8.187 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 H 0.097 0.903 4 C -0.003 4.003 5 N -0.329 5.329 6 C 0.398 3.602 7 O -0.448 6.448 8 C -0.218 4.218 9 C -0.033 4.033 10 O -0.069 6.069 11 C 0.029 3.971 12 C -0.045 4.045 13 C -0.107 4.107 14 C -0.148 4.148 15 C -0.109 4.109 16 C -0.134 4.134 17 C -0.106 4.106 18 N -0.197 5.197 19 C -0.028 4.028 20 C 0.060 3.940 21 H 0.080 0.920 22 N -0.355 5.355 23 C -0.373 4.373 24 H 0.091 0.909 25 C -0.257 4.257 26 N -0.616 5.616 27 Si 0.795 3.205 28 H -0.222 1.222 29 H -0.206 1.206 30 H -0.202 1.202 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.286 0.714 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.167 0.833 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.459 -13.837 -8.213 19.754 hybrid contribution 0.035 0.260 0.454 0.524 sum 11.494 -13.577 -7.759 19.408 Atomic orbital electron populations 1.21610 0.92270 1.02343 1.02218 1.22452 0.97771 0.99079 0.93192 0.90255 1.22113 0.86864 0.94581 0.96787 1.48304 1.29550 1.42635 1.12447 1.16586 0.80723 0.78402 0.84467 1.90761 1.71800 1.66329 1.15863 1.21730 1.02522 1.06157 0.91355 1.25959 0.86414 0.94560 0.96362 1.84437 1.46984 1.56409 1.19022 1.24231 0.93531 0.92368 0.86933 1.17429 0.97380 1.02990 0.86703 1.21243 0.99524 0.97743 0.92212 1.21373 0.96307 0.99678 0.97460 1.21776 0.95185 0.93972 1.00014 1.21491 1.00564 0.99979 0.91383 1.21481 0.92719 0.96052 1.00393 1.71185 1.10750 1.20682 1.17088 1.23223 1.00024 1.00732 0.78809 1.21530 0.92564 0.93322 0.86595 0.92048 1.42325 1.86398 1.06099 1.00698 1.19500 1.40754 0.92702 0.84294 0.90929 1.25447 1.03242 0.95781 1.01264 1.69803 1.58109 1.03825 1.29817 0.85334 0.78196 0.76947 0.80056 1.22208 1.20590 1.20224 0.93289 0.90500 0.92072 0.90108 0.90610 0.71390 0.86956 0.84510 0.82350 0.81609 0.83317 0.93569 0.90143 0.79069 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.16 71.98 0.66 -2.91 16 2 C -0.11 -3.40 3.20 -9.60 -0.03 -3.43 16 3 H 0.08 2.66 8.00 -2.39 -0.02 2.65 16 4 C 0.12 3.61 6.46 86.73 0.56 4.17 16 5 N -0.60 -21.02 3.33 -815.63 -2.71 -23.73 16 6 C 0.61 21.26 7.85 86.67 0.68 21.94 16 7 O -0.57 -20.68 17.22 -4.07 -0.07 -20.75 16 8 C -0.10 -3.08 6.81 40.50 0.28 -2.80 16 9 C 0.04 0.96 11.94 67.35 0.80 1.76 16 10 O -0.18 -4.36 10.45 -3.99 -0.04 -4.40 16 11 C 0.24 6.77 7.88 87.39 0.69 7.46 16 12 C -0.04 -1.12 5.87 -20.10 -0.12 -1.24 16 13 C -0.09 -2.45 9.68 22.52 0.22 -2.23 16 14 C -0.13 -2.89 10.03 22.23 0.22 -2.67 16 15 C -0.09 -1.42 10.04 22.32 0.22 -1.20 16 16 C -0.12 -1.62 10.03 22.23 0.22 -1.39 16 17 C -0.09 -1.58 9.71 22.52 0.22 -1.36 16 18 N -0.47 -15.87 8.03 -294.24 -2.36 -18.23 16 19 C 0.10 3.83 5.83 86.86 0.51 4.33 16 20 C 0.17 6.81 3.16 46.39 0.15 6.95 16 21 H 0.06 2.51 8.00 -2.39 -0.02 2.50 16 22 N -0.72 -35.17 5.24 -316.36 -1.66 -36.82 16 23 C -0.24 -13.01 9.96 84.03 0.84 -12.17 16 24 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 25 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 26 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 27 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 30 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.60 8.06 -2.38 -0.02 1.59 16 34 H 0.08 2.28 7.76 -2.39 -0.02 2.26 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.27 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.11 3.80 7.82 -2.91 -0.02 3.78 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 41 H 0.15 2.05 7.89 -2.91 -0.02 2.03 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.08 3.35 6.15 -2.39 -0.01 3.33 16 44 H 0.38 19.83 7.76 -92.71 -0.72 19.11 16 45 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -69.80 383.70 2.35 -67.46 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.30 Total: 34.68 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.58 Total: 12.08 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -6.45 Total: -136.07 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.11 Total: -25.15 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.80 2.35 -67.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939557390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.077 kcal (2) G-P(sol) polarization free energy of solvation -69.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds