Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47052 * 2 1 4 4 N 1.46496 * 109.47116 * 120.00354 * 2 1 3 5 5 C 1.34779 * 119.99579 * 274.99718 * 4 2 1 6 6 O 1.21646 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.47135 * 119.99906 * 180.02562 * 5 4 2 8 8 N 1.35887 * 126.61738 * 354.74973 * 7 5 4 9 9 C 1.29923 * 108.74314 * 179.97438 * 8 7 5 10 10 O 1.34055 * 109.78101 * 359.97438 * 9 8 7 11 11 C 1.34763 * 108.23361 * 0.02562 * 10 9 8 12 12 C 1.47581 * 126.75969 * 180.02562 * 11 10 9 13 13 C 1.39689 * 120.15803 * 128.98514 * 12 11 10 14 14 C 1.37928 * 119.83846 * 179.71752 * 13 12 11 15 15 C 1.38376 * 120.15768 * 0.55468 * 14 13 12 16 16 C 1.38376 * 120.31490 * 359.71952 * 15 14 13 17 17 C 1.37929 * 120.15799 * 0.02562 * 16 15 14 18 18 C 1.52998 * 109.46561 * 240.00410 * 2 1 3 19 19 C 1.53950 * 113.73950 * 158.74456 * 18 2 1 20 20 N 1.47815 * 86.03379 * 222.08077 * 19 18 2 21 21 C 1.36940 * 134.45231 * 204.64267 * 20 19 18 22 22 H 1.08004 * 119.99381 * 179.86282 * 21 20 19 23 23 C 1.38811 * 120.00122 * 359.86875 * 21 20 19 24 24 N 1.31612 * 120.00195 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99718 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47004 * 59.99919 * 25 23 21 27 27 H 1.48497 * 109.46974 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46992 * 299.99707 * 25 23 21 29 29 C 1.47581 * 91.05153 * 24.54534 * 20 19 18 30 30 H 1.09004 * 109.46986 * 299.99912 * 1 2 3 31 31 H 1.08997 * 109.47244 * 59.99762 * 1 2 3 32 32 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00449 * 95.00269 * 4 2 1 34 34 H 1.08004 * 125.11152 * 179.97438 * 9 8 7 35 35 H 1.07997 * 120.07729 * 359.96807 * 13 12 11 36 36 H 1.07997 * 119.91870 * 180.27177 * 14 13 12 37 37 H 1.08001 * 119.84306 * 179.74211 * 15 14 13 38 38 H 1.08001 * 119.92098 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.08081 * 180.02562 * 17 16 15 40 40 H 1.08999 * 112.94600 * 290.32818 * 18 2 1 41 41 H 1.08998 * 113.76597 * 336.34281 * 19 18 2 42 42 H 1.08999 * 113.77039 * 107.74160 * 19 18 2 43 43 H 0.96995 * 119.99947 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.76732 * 221.15059 * 29 20 19 45 45 H 1.08997 * 113.86684 * 89.77214 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1621 2.4116 7 6 2.6381 -0.7117 3.5583 8 7 2.9043 -2.0391 3.6760 9 6 3.3190 -2.2761 4.8842 10 8 3.3400 -1.1358 5.5886 11 6 2.9191 -0.1374 4.7873 12 6 2.7849 1.2875 5.1477 13 6 3.3613 2.2724 4.3420 14 6 3.2269 3.6024 4.6819 15 6 2.5329 3.9613 5.8240 16 6 1.9642 2.9907 6.6298 17 6 2.0862 1.6571 6.2994 18 6 2.0399 -0.7212 -1.2493 19 6 3.4847 -0.3520 -1.6318 20 7 2.9977 -0.3176 -3.0269 21 6 3.5874 -0.4756 -4.2527 22 1 2.9925 -0.4036 -5.1513 23 6 4.9494 -0.7283 -4.3403 24 7 5.6743 -0.8156 -3.2453 25 14 5.7536 -0.9445 -6.0125 26 1 5.5654 0.2903 -6.8156 27 1 7.2051 -1.2020 -5.8341 28 1 5.1296 -2.0932 -6.7170 29 6 1.6212 -0.0471 -2.5684 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 3.6039 -3.2462 5.2641 35 1 3.9074 1.9933 3.4530 36 1 3.6682 4.3651 4.0576 37 1 2.4343 5.0040 6.0875 38 1 1.4236 3.2780 7.5195 39 1 1.6415 0.9006 6.9290 40 1 1.8527 -1.7947 -1.2264 41 1 3.8047 0.6190 -1.2540 42 1 4.2070 -1.1448 -1.4368 43 1 6.6262 -0.9918 -3.3065 44 1 0.8585 -0.5968 -3.1200 45 1 1.3908 1.0133 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969800029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = 71.012604 kcal Electronic energy + Delta-G solvation = -28950.423088 eV Core-core repulsion = 24936.590081 eV Total energy + Delta-G solvation = -4013.833007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50104 -39.65130 -39.11538 -37.96101 -35.04876 -34.75123 -32.64915 -32.15385 -31.14296 -30.49734 -28.90895 -27.48200 -25.23021 -24.44764 -23.74463 -23.57345 -22.62360 -21.77318 -20.95020 -20.27917 -19.30085 -18.17831 -17.26597 -16.95991 -16.71873 -16.26707 -16.09257 -15.54568 -15.05899 -14.86190 -14.66972 -14.31606 -14.14104 -13.86077 -13.66897 -13.61066 -13.38779 -13.01314 -12.88622 -12.41131 -12.11166 -11.71053 -11.63325 -11.52353 -11.35275 -11.27895 -11.24986 -11.00509 -10.87388 -10.70773 -10.33468 -10.14476 -9.82281 -9.71463 -9.64089 -9.37393 -9.10515 -8.76935 -8.75563 -8.54547 -6.83803 -5.72859 -3.05109 0.44614 1.23896 1.35813 1.91713 2.32127 3.23584 3.36356 3.41744 3.45527 3.46969 3.58998 3.88439 4.32490 4.48198 4.67701 4.71150 4.79122 4.91528 5.11351 5.17714 5.21828 5.29960 5.31786 5.34089 5.45958 5.57039 5.67686 5.70031 5.82258 5.83420 5.89100 6.00395 6.07521 6.19479 6.26283 6.27939 6.32166 6.39700 6.44793 6.62121 6.69654 6.71561 6.83709 7.21942 7.27630 7.40729 7.60125 7.75178 8.01855 8.34100 9.08167 9.74581 10.64301 11.44103 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.002554 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.016137 B =10959.703904 C =11208.120353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.089 0.911 4 N -0.698 5.698 5 C 0.597 3.403 6 O -0.530 6.530 7 C -0.050 4.050 8 N -0.458 5.458 9 C 0.176 3.824 10 O -0.193 6.193 11 C 0.074 3.926 12 C -0.029 4.029 13 C -0.043 4.043 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.129 4.129 17 C -0.089 4.089 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.131 3.869 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.408 0.592 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 2.151 23.017 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.107 0.893 4 N -0.347 5.347 5 C 0.382 3.618 6 O -0.407 6.407 7 C -0.171 4.171 8 N -0.186 5.186 9 C -0.051 4.051 10 O -0.079 6.079 11 C 0.018 3.982 12 C -0.029 4.029 13 C -0.061 4.061 14 C -0.138 4.138 15 C -0.119 4.119 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.167 4.167 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.004 3.996 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.272 0.728 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.703 2.464 22.330 23.749 hybrid contribution 0.756 -0.372 -0.407 0.936 sum -6.947 2.091 21.922 23.092 Atomic orbital electron populations 1.22132 0.95567 1.01840 1.02095 1.21151 0.93553 0.97544 0.83087 0.89295 1.45913 1.65353 1.14565 1.08883 1.16613 0.77881 0.85744 0.81584 1.90842 1.50930 1.14467 1.84475 1.22124 1.09534 0.89703 0.95777 1.70680 1.14648 1.14504 1.18784 1.28034 1.00366 0.90606 0.86133 1.84477 1.64609 1.17121 1.41725 1.21813 0.99161 0.88763 0.88488 1.17452 1.02444 0.85545 0.97505 1.21132 0.95839 0.91980 0.97154 1.21081 0.99785 0.95748 0.97236 1.21330 0.96417 0.99602 0.94519 1.20997 1.00968 0.92398 1.00382 1.21181 0.97714 0.96773 0.95067 1.23823 1.00930 0.99757 0.92154 1.22288 0.91415 0.98454 0.83235 1.45985 1.03291 1.82603 1.02002 1.18977 0.91426 1.41687 0.82965 0.90344 1.24780 0.96060 1.02430 0.97228 1.69808 1.06096 1.55138 1.25796 0.86211 0.78420 0.77974 0.83216 1.21222 1.21588 1.21101 1.22482 0.89644 0.96590 0.90848 0.92758 0.91330 0.92691 0.75723 0.72819 0.85357 0.85208 0.85704 0.85579 0.85828 0.89333 0.95673 0.91039 0.93653 0.93769 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.31 37.16 0.35 -1.85 16 2 C 0.15 2.42 2.38 -67.93 -0.16 2.26 16 3 H 0.09 1.59 7.41 -51.93 -0.38 1.21 16 4 N -0.70 -10.70 5.07 -54.97 -0.28 -10.98 16 5 C 0.60 9.53 7.72 -12.65 -0.10 9.44 16 6 O -0.53 -9.33 13.50 5.24 0.07 -9.26 16 7 C -0.05 -0.72 7.04 -82.35 -0.58 -1.30 16 8 N -0.46 -5.79 11.04 -11.04 -0.12 -5.91 16 9 C 0.18 1.60 13.16 51.95 0.68 2.28 16 10 O -0.19 -2.08 10.75 5.10 0.05 -2.02 16 11 C 0.07 0.96 6.84 -35.66 -0.24 0.72 16 12 C -0.03 -0.36 5.26 -105.00 -0.55 -0.91 16 13 C -0.04 -0.54 7.73 -39.15 -0.30 -0.85 16 14 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 15 C -0.10 -0.91 10.04 -39.48 -0.40 -1.30 16 16 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 17 C -0.09 -0.92 9.79 -39.15 -0.38 -1.31 16 18 C -0.15 -2.71 3.47 -89.70 -0.31 -3.02 16 19 C 0.17 4.08 7.08 -2.83 -0.02 4.06 16 20 N -0.61 -15.97 3.70 -177.70 -0.66 -16.62 16 21 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 22 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.75 11.39 55.49 0.63 -27.12 16 25 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 C 0.13 2.67 7.64 -2.97 -0.02 2.65 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 5.93 8.34 -40.82 -0.34 5.59 16 34 H 0.26 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.13 1.76 7.61 -52.49 -0.40 1.36 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 42 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -34.71 383.19 -8.72 -43.43 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.07 Total: 4.52 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.10 Total: 0.77 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.43 Total: -60.63 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.13 Total: -11.28 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.71 -8.72 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969800029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.446 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds