Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47052 * 2 1 4 4 N 1.46496 * 109.47116 * 120.00354 * 2 1 3 5 5 C 1.34779 * 119.99579 * 274.99718 * 4 2 1 6 6 O 1.21646 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.47135 * 119.99906 * 180.02562 * 5 4 2 8 8 N 1.35887 * 126.61738 * 354.74973 * 7 5 4 9 9 C 1.29923 * 108.74314 * 179.97438 * 8 7 5 10 10 O 1.34055 * 109.78101 * 359.97438 * 9 8 7 11 11 C 1.34763 * 108.23361 * 0.02562 * 10 9 8 12 12 C 1.47581 * 126.75969 * 180.02562 * 11 10 9 13 13 C 1.39689 * 120.15803 * 128.98514 * 12 11 10 14 14 C 1.37928 * 119.83846 * 179.71752 * 13 12 11 15 15 C 1.38376 * 120.15768 * 0.55468 * 14 13 12 16 16 C 1.38376 * 120.31490 * 359.71952 * 15 14 13 17 17 C 1.37929 * 120.15799 * 0.02562 * 16 15 14 18 18 C 1.52998 * 109.46561 * 240.00410 * 2 1 3 19 19 C 1.53950 * 113.73950 * 158.74456 * 18 2 1 20 20 N 1.47815 * 86.03379 * 222.08077 * 19 18 2 21 21 C 1.36940 * 134.45231 * 204.64267 * 20 19 18 22 22 H 1.08004 * 119.99381 * 179.86282 * 21 20 19 23 23 C 1.38811 * 120.00122 * 359.86875 * 21 20 19 24 24 N 1.31612 * 120.00195 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99718 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47004 * 59.99919 * 25 23 21 27 27 H 1.48497 * 109.46974 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46992 * 299.99707 * 25 23 21 29 29 C 1.47581 * 91.05153 * 24.54534 * 20 19 18 30 30 H 1.09004 * 109.46986 * 299.99912 * 1 2 3 31 31 H 1.08997 * 109.47244 * 59.99762 * 1 2 3 32 32 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00449 * 95.00269 * 4 2 1 34 34 H 1.08004 * 125.11152 * 179.97438 * 9 8 7 35 35 H 1.07997 * 120.07729 * 359.96807 * 13 12 11 36 36 H 1.07997 * 119.91870 * 180.27177 * 14 13 12 37 37 H 1.08001 * 119.84306 * 179.74211 * 15 14 13 38 38 H 1.08001 * 119.92098 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.08081 * 180.02562 * 17 16 15 40 40 H 1.08999 * 112.94600 * 290.32818 * 18 2 1 41 41 H 1.08998 * 113.76597 * 336.34281 * 19 18 2 42 42 H 1.08999 * 113.77039 * 107.74160 * 19 18 2 43 43 H 0.96995 * 119.99947 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.76732 * 221.15059 * 29 20 19 45 45 H 1.08997 * 113.86684 * 89.77214 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1621 2.4116 7 6 2.6381 -0.7117 3.5583 8 7 2.9043 -2.0391 3.6760 9 6 3.3190 -2.2761 4.8842 10 8 3.3400 -1.1358 5.5886 11 6 2.9191 -0.1374 4.7873 12 6 2.7849 1.2875 5.1477 13 6 3.3613 2.2724 4.3420 14 6 3.2269 3.6024 4.6819 15 6 2.5329 3.9613 5.8240 16 6 1.9642 2.9907 6.6298 17 6 2.0862 1.6571 6.2994 18 6 2.0399 -0.7212 -1.2493 19 6 3.4847 -0.3520 -1.6318 20 7 2.9977 -0.3176 -3.0269 21 6 3.5874 -0.4756 -4.2527 22 1 2.9925 -0.4036 -5.1513 23 6 4.9494 -0.7283 -4.3403 24 7 5.6743 -0.8156 -3.2453 25 14 5.7536 -0.9445 -6.0125 26 1 5.5654 0.2903 -6.8156 27 1 7.2051 -1.2020 -5.8341 28 1 5.1296 -2.0932 -6.7170 29 6 1.6212 -0.0471 -2.5684 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 3.6039 -3.2462 5.2641 35 1 3.9074 1.9933 3.4530 36 1 3.6682 4.3651 4.0576 37 1 2.4343 5.0040 6.0875 38 1 1.4236 3.2780 7.5195 39 1 1.6415 0.9006 6.9290 40 1 1.8527 -1.7947 -1.2264 41 1 3.8047 0.6190 -1.2540 42 1 4.2070 -1.1448 -1.4368 43 1 6.6262 -0.9918 -3.3065 44 1 0.8585 -0.5968 -3.1200 45 1 1.3908 1.0133 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969800029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = 46.552630 kcal Electronic energy + Delta-G solvation = -28951.483752 eV Core-core repulsion = 24936.590081 eV Total energy + Delta-G solvation = -4014.893671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.37931 -40.97060 -39.97197 -39.54686 -36.22912 -35.94639 -34.16619 -33.48959 -31.94051 -31.87026 -29.84364 -29.34760 -26.76224 -25.91321 -25.31026 -24.38220 -23.54914 -22.93867 -22.10885 -21.50032 -20.78489 -19.29525 -18.75467 -18.18523 -17.84732 -17.42410 -17.13408 -16.91388 -16.43410 -15.96082 -15.81781 -15.74607 -15.43152 -15.15078 -14.79682 -14.67473 -14.55444 -14.36935 -14.08526 -13.69430 -13.45384 -13.27877 -13.10574 -12.90562 -12.69848 -12.58712 -12.48374 -12.44467 -12.11968 -12.03673 -11.89199 -11.75583 -11.54071 -11.32772 -11.14497 -10.86637 -10.55497 -10.08513 -9.88161 -9.43097 -8.93302 -7.90750 -5.24894 -0.45760 0.43476 0.50180 1.03155 1.43904 1.46605 1.48084 1.54049 2.08266 2.22533 2.46884 2.78388 3.06980 3.29537 3.36700 3.46510 3.65705 3.79616 3.92183 3.94886 4.01129 4.19781 4.27631 4.32225 4.38323 4.46558 4.51247 4.56971 4.65040 4.72823 4.80825 4.84321 4.90034 4.98922 5.05201 5.05820 5.13212 5.24195 5.31407 5.41717 5.43927 5.47289 5.53309 5.54070 5.63974 5.92242 5.96455 6.27573 6.58041 6.90282 7.11560 7.60172 8.56041 9.25944 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.002554 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.016137 B =10959.703904 C =11208.120353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.161 3.839 3 H 0.067 0.933 4 N -0.697 5.697 5 C 0.594 3.406 6 O -0.553 6.553 7 C -0.078 4.078 8 N -0.490 5.490 9 C 0.203 3.797 10 O -0.190 6.190 11 C 0.074 3.926 12 C -0.052 4.052 13 C -0.068 4.068 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.125 4.125 17 C -0.094 4.094 18 C -0.111 4.111 19 C 0.169 3.831 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.086 0.914 23 C -0.071 4.071 24 N -0.955 5.955 25 Si 0.981 3.019 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.273 1.273 29 C 0.133 3.867 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.310 0.690 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.004 0.996 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 1.820 24.455 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.056 3.944 3 H 0.085 0.915 4 N -0.346 5.346 5 C 0.380 3.620 6 O -0.432 6.432 7 C -0.198 4.198 8 N -0.218 5.218 9 C -0.025 4.025 10 O -0.077 6.077 11 C 0.017 3.983 12 C -0.053 4.053 13 C -0.086 4.086 14 C -0.151 4.151 15 C -0.115 4.115 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.131 4.131 19 C 0.043 3.957 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.104 0.896 23 C -0.263 4.263 24 N -0.604 5.604 25 Si 0.809 3.191 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.199 1.199 29 C 0.008 3.992 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.324 0.676 35 H 0.120 0.880 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.118 0.882 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.423 2.129 23.755 25.645 hybrid contribution 1.280 -0.252 -0.756 1.508 sum -8.144 1.877 22.999 24.470 Atomic orbital electron populations 1.22041 0.93069 1.02998 1.02495 1.20925 0.95245 0.95904 0.82323 0.91509 1.45847 1.65519 1.14653 1.08627 1.16877 0.77428 0.85576 0.82159 1.90814 1.51941 1.15428 1.84988 1.21914 1.11466 0.90773 0.95633 1.70650 1.16669 1.13690 1.20775 1.29273 0.96905 0.91457 0.84853 1.84510 1.64456 1.17237 1.41474 1.21937 0.98641 0.89437 0.88326 1.17648 1.03708 0.85280 0.98671 1.21066 0.97194 0.93371 0.97000 1.21306 1.00338 0.95059 0.98351 1.21714 0.94984 1.01373 0.93386 1.21435 1.00089 0.91595 1.01092 1.21462 0.97182 0.98143 0.94377 1.23445 0.96422 1.00409 0.92807 1.22147 0.93906 0.96343 0.83274 1.46413 1.05870 1.82894 1.01879 1.19436 0.91972 1.40642 0.84392 0.89605 1.25682 0.96804 1.02935 1.00921 1.70023 1.05812 1.56663 1.27945 0.85119 0.76831 0.78300 0.78889 1.20395 1.22145 1.19859 1.22667 0.87624 0.97644 0.91262 0.93075 0.90190 0.91113 0.75266 0.67566 0.88028 0.84326 0.82606 0.82190 0.84140 0.88177 0.97806 0.94361 0.94383 0.91587 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.31 71.98 0.67 -3.22 16 2 C 0.16 5.20 2.38 44.99 0.11 5.31 16 3 H 0.07 2.49 7.41 -2.38 -0.02 2.47 16 4 N -0.70 -21.98 5.07 -446.06 -2.26 -24.24 16 5 C 0.59 19.82 7.72 86.58 0.67 20.49 16 6 O -0.55 -20.53 13.50 -4.18 -0.06 -20.58 16 7 C -0.08 -2.30 7.04 40.92 0.29 -2.01 16 8 N -0.49 -12.20 11.04 -303.74 -3.35 -15.55 16 9 C 0.20 3.28 13.16 130.53 1.72 5.00 16 10 O -0.19 -3.88 10.75 -4.66 -0.05 -3.93 16 11 C 0.07 1.94 6.84 24.81 0.17 2.11 16 12 C -0.05 -1.34 5.26 -20.11 -0.11 -1.45 16 13 C -0.07 -1.84 7.73 22.55 0.17 -1.67 16 14 C -0.13 -2.87 10.03 22.23 0.22 -2.64 16 15 C -0.10 -1.57 10.04 22.34 0.22 -1.35 16 16 C -0.12 -1.91 10.03 22.23 0.22 -1.69 16 17 C -0.09 -1.82 9.79 22.55 0.22 -1.60 16 18 C -0.11 -4.11 3.47 -10.14 -0.04 -4.14 16 19 C 0.17 8.40 7.08 86.44 0.61 9.02 16 20 N -0.64 -34.06 3.70 -716.11 -2.65 -36.71 16 21 C -0.24 -13.61 10.70 84.03 0.90 -12.71 16 22 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 24 N -0.96 -59.64 11.39 21.65 0.25 -59.39 16 25 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 29 C 0.13 5.31 7.64 86.48 0.66 5.97 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 12.24 8.34 -92.71 -0.77 11.47 16 34 H 0.31 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.10 3.17 7.61 -2.91 -0.02 3.15 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 42 H 0.04 2.14 7.17 -2.39 -0.02 2.12 16 43 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -79.20 383.19 1.33 -77.87 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.25 Total: 22.00 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.18 Total: 11.74 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -8.02 Total: -135.89 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.11 Total: -24.51 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.20 1.33 -77.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969800029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.426 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds