Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47344 * 2 1 4 4 N 1.46500 * 109.47014 * 239.99548 * 2 1 3 5 5 C 1.34783 * 119.99735 * 85.00039 * 4 2 1 6 6 O 1.21652 * 120.00254 * 0.27822 * 5 4 2 7 7 C 1.47136 * 119.99887 * 180.02562 * 5 4 2 8 8 N 1.35881 * 126.62046 * 355.18865 * 7 5 4 9 9 C 1.29923 * 108.74598 * 179.97438 * 8 7 5 10 10 O 1.34058 * 109.77803 * 0.02562 * 9 8 7 11 11 C 1.34757 * 108.23481 * 359.76443 * 10 9 8 12 12 C 1.47583 * 126.76190 * 180.22563 * 11 10 9 13 13 C 1.39687 * 120.15054 * 129.51849 * 12 11 10 14 14 C 1.37933 * 119.83690 * 179.75176 * 13 12 11 15 15 C 1.38374 * 120.15732 * 0.55104 * 14 13 12 16 16 C 1.38375 * 120.31383 * 359.69798 * 15 14 13 17 17 C 1.37928 * 120.15584 * 0.02896 * 16 15 14 18 18 C 1.53003 * 109.46872 * 119.99982 * 2 1 3 19 19 C 1.53942 * 113.73881 * 281.86596 * 18 2 1 20 20 N 1.47581 * 86.11689 * 222.04844 * 19 18 2 21 21 C 1.36933 * 134.49736 * 204.64489 * 20 19 18 22 22 H 1.08002 * 120.00865 * 180.02562 * 21 20 19 23 23 C 1.38819 * 119.99609 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99827 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47268 * 89.99845 * 25 23 21 27 27 H 1.48496 * 109.46706 * 210.00080 * 25 23 21 28 28 H 1.48502 * 109.46944 * 329.99881 * 25 23 21 29 29 C 1.47589 * 91.01348 * 24.64319 * 20 19 18 30 30 H 1.09003 * 109.46786 * 59.76365 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.76732 * 1 2 3 32 32 H 1.08996 * 109.46700 * 299.77326 * 1 2 3 33 33 H 0.97002 * 120.00566 * 265.00669 * 4 2 1 34 34 H 1.08003 * 125.11307 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.08669 * 0.02562 * 13 12 11 36 36 H 1.08010 * 119.92311 * 180.27492 * 14 13 12 37 37 H 1.08000 * 119.84474 * 179.72426 * 15 14 13 38 38 H 1.07999 * 119.92245 * 180.02562 * 16 15 14 39 39 H 1.08007 * 120.07828 * 180.02562 * 17 16 15 40 40 H 1.09000 * 112.94439 * 53.60282 * 18 2 1 41 41 H 1.08997 * 113.77340 * 336.34818 * 19 18 2 42 42 H 1.09000 * 113.77054 * 107.75064 * 19 18 2 43 43 H 0.97004 * 119.99632 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.76651 * 221.05712 * 29 20 19 45 45 H 1.08999 * 113.76628 * 89.66073 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3572 6 8 1.8625 1.1632 -2.4106 7 6 2.6369 -0.7122 -3.5586 8 7 3.0818 -1.9941 -3.6296 9 6 3.4290 -2.2484 -4.8555 10 8 3.2290 -1.1639 -5.6178 11 6 2.7291 -0.1860 -4.8370 12 6 2.3559 1.1779 -5.2597 13 6 1.1032 1.6979 -4.9256 14 6 0.7631 2.9752 -5.3196 15 6 1.6550 3.7368 -6.0539 16 6 2.8956 3.2262 -6.3928 17 6 3.2513 1.9526 -6.0007 18 6 2.0400 -0.7213 1.2493 19 6 1.9733 0.1326 2.5285 20 7 3.3065 -0.4162 2.8440 21 6 4.0148 -0.6121 3.9993 22 1 5.0035 -1.0451 3.9600 23 6 3.4625 -0.2532 5.2213 24 7 2.2579 0.2749 5.2694 25 14 4.4291 -0.5198 6.7975 26 1 5.2410 0.6885 7.0907 27 1 3.4881 -0.7681 7.9191 28 1 5.3265 -1.6919 6.6355 29 6 3.5697 -0.6691 1.4139 30 1 -0.3633 0.5175 -0.8879 31 1 -0.3634 -1.0276 -0.0042 32 1 -0.3632 0.5103 0.8920 33 1 2.2490 -1.6319 -1.1526 34 1 3.8207 -3.1914 -5.2074 35 1 0.4043 1.1029 -4.3564 36 1 -0.2035 3.3803 -5.0582 37 1 1.3817 4.7348 -6.3636 38 1 3.5870 3.8263 -6.9657 39 1 4.2201 1.5554 -6.2656 40 1 1.6200 -1.7205 1.3642 41 1 1.9735 1.2063 2.3406 42 1 1.1943 -0.1786 3.2244 43 1 1.8722 0.5260 6.1233 44 1 4.0652 -1.6204 1.2200 45 1 4.0388 0.1691 0.8987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969800032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 70.768841 kcal Electronic energy + Delta-G solvation = -28857.920139 eV Core-core repulsion = 24844.076562 eV Total energy + Delta-G solvation = -4013.843577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.56374 -39.69480 -39.16304 -37.95790 -35.10914 -34.77202 -32.70229 -32.12051 -31.19642 -30.57847 -28.96261 -27.44164 -25.20739 -24.48090 -23.78089 -23.62790 -22.66990 -21.80060 -20.96615 -20.29867 -19.32419 -18.25479 -17.33019 -17.01242 -16.75557 -16.33752 -16.03082 -15.59320 -15.09885 -14.80398 -14.67055 -14.41409 -14.13251 -13.94527 -13.68881 -13.67094 -13.46650 -13.11716 -12.94094 -12.28924 -12.06772 -11.75029 -11.62450 -11.53539 -11.40125 -11.36662 -11.18440 -11.06558 -10.86143 -10.64723 -10.32140 -10.22951 -9.81367 -9.77248 -9.64597 -9.37772 -9.14593 -8.83712 -8.75376 -8.58245 -6.83275 -5.73245 -3.04952 0.38726 1.18939 1.31206 1.85524 2.25903 3.18949 3.31020 3.41604 3.46187 3.48217 3.53857 3.82618 4.27382 4.48651 4.63101 4.66355 4.74501 4.86054 5.08133 5.15582 5.17257 5.22715 5.25890 5.40281 5.44264 5.58253 5.62425 5.68253 5.77361 5.81545 5.86200 6.05154 6.11405 6.15261 6.20062 6.26008 6.30738 6.41183 6.50404 6.62230 6.66242 6.67785 6.84039 7.15998 7.26395 7.41047 7.59938 7.71049 8.02345 8.29896 9.08818 9.74624 10.64589 11.44077 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002406 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.022162 B =11637.094647 C =12288.997802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.699 5.699 5 C 0.596 3.404 6 O -0.529 6.529 7 C -0.051 4.051 8 N -0.458 5.458 9 C 0.176 3.824 10 O -0.193 6.193 11 C 0.074 3.926 12 C -0.029 4.029 13 C -0.044 4.044 14 C -0.121 4.121 15 C -0.100 4.100 16 C -0.128 4.128 17 C -0.088 4.088 18 C -0.147 4.147 19 C 0.177 3.823 20 N -0.612 5.612 21 C -0.221 4.221 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.256 0.744 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.041 0.959 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 -0.378 -27.406 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.348 5.348 5 C 0.380 3.620 6 O -0.405 6.405 7 C -0.172 4.172 8 N -0.187 5.187 9 C -0.052 4.052 10 O -0.079 6.079 11 C 0.018 3.982 12 C -0.030 4.030 13 C -0.062 4.062 14 C -0.139 4.139 15 C -0.118 4.118 16 C -0.146 4.146 17 C -0.106 4.106 18 C -0.167 4.167 19 C 0.051 3.949 20 N -0.338 5.338 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.272 0.728 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.945 0.025 -26.558 26.721 hybrid contribution 0.889 -0.322 0.415 1.032 sum -2.056 -0.297 -26.143 26.226 Atomic orbital electron populations 1.22108 0.95296 1.01853 1.02282 1.21182 0.93868 0.97492 0.82839 0.89282 1.45964 1.65371 1.14519 1.08981 1.16634 0.77985 0.85759 0.81621 1.90853 1.50995 1.14264 1.84433 1.22147 1.09034 0.91340 0.94674 1.70680 1.13878 1.13867 1.20232 1.28039 1.00799 0.91777 0.84552 1.84477 1.62390 1.20664 1.40399 1.21825 0.98383 0.89484 0.88517 1.17448 0.95697 0.87621 1.02210 1.21064 0.94164 0.95683 0.95267 1.21059 1.00319 0.93881 0.98674 1.21334 0.93739 0.99693 0.97047 1.21016 0.97039 0.95368 1.01181 1.21202 0.98716 0.94431 0.96293 1.23857 0.97636 1.00775 0.94397 1.22186 0.89672 0.93838 0.89245 1.45944 1.16288 1.71924 0.99658 1.19030 0.98325 1.34752 0.82804 0.90332 1.24780 0.97066 1.01243 0.97464 1.69810 1.15196 1.47536 1.24366 0.86125 0.78766 0.77765 0.83150 1.21664 1.21630 1.20659 1.22541 0.93136 0.97723 0.86697 0.92840 0.92713 0.90955 0.75862 0.72823 0.85567 0.85281 0.85667 0.85501 0.85755 0.89255 0.95462 0.90677 0.93667 0.94059 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.44 37.16 0.35 -1.89 16 2 C 0.15 2.41 2.29 -67.93 -0.16 2.25 16 3 H 0.09 1.61 7.48 -51.93 -0.39 1.23 16 4 N -0.70 -10.22 4.94 -54.97 -0.27 -10.49 16 5 C 0.60 9.10 7.71 -12.65 -0.10 9.01 16 6 O -0.53 -9.08 13.46 5.23 0.07 -9.01 16 7 C -0.05 -0.68 7.04 -82.35 -0.58 -1.26 16 8 N -0.46 -5.40 11.04 -11.04 -0.12 -5.52 16 9 C 0.18 1.45 13.16 51.96 0.68 2.14 16 10 O -0.19 -1.93 10.75 5.11 0.05 -1.88 16 11 C 0.07 0.91 6.84 -35.66 -0.24 0.66 16 12 C -0.03 -0.35 5.27 -105.01 -0.55 -0.90 16 13 C -0.04 -0.50 7.72 -39.15 -0.30 -0.81 16 14 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 15 C -0.10 -0.86 10.04 -39.48 -0.40 -1.25 16 16 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 17 C -0.09 -0.89 9.79 -39.16 -0.38 -1.28 16 18 C -0.15 -2.72 3.36 -89.69 -0.30 -3.02 16 19 C 0.18 4.16 6.96 -2.98 -0.02 4.14 16 20 N -0.61 -16.09 3.70 -177.91 -0.66 -16.75 16 21 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -27.65 11.38 55.49 0.63 -27.01 16 25 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.13 2.65 8.38 -2.97 -0.02 2.62 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.41 5.52 8.34 -40.82 -0.34 5.18 16 34 H 0.26 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.13 1.49 7.57 -52.49 -0.40 1.10 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 42 H 0.08 1.94 7.15 -51.93 -0.37 1.57 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -34.73 384.17 -8.71 -43.45 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.11 Total: 3.51 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.08 Total: 0.44 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.42 Total: -59.78 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.13 Total: -10.89 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.73 -8.71 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969800032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.214 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds