Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47344 * 2 1 4 4 N 1.46500 * 109.47014 * 239.99548 * 2 1 3 5 5 C 1.34783 * 119.99735 * 85.00039 * 4 2 1 6 6 O 1.21652 * 120.00254 * 0.27822 * 5 4 2 7 7 C 1.47136 * 119.99887 * 180.02562 * 5 4 2 8 8 N 1.35881 * 126.62046 * 355.18865 * 7 5 4 9 9 C 1.29923 * 108.74598 * 179.97438 * 8 7 5 10 10 O 1.34058 * 109.77803 * 0.02562 * 9 8 7 11 11 C 1.34757 * 108.23481 * 359.76443 * 10 9 8 12 12 C 1.47583 * 126.76190 * 180.22563 * 11 10 9 13 13 C 1.39687 * 120.15054 * 129.51849 * 12 11 10 14 14 C 1.37933 * 119.83690 * 179.75176 * 13 12 11 15 15 C 1.38374 * 120.15732 * 0.55104 * 14 13 12 16 16 C 1.38375 * 120.31383 * 359.69798 * 15 14 13 17 17 C 1.37928 * 120.15584 * 0.02896 * 16 15 14 18 18 C 1.53003 * 109.46872 * 119.99982 * 2 1 3 19 19 C 1.53942 * 113.73881 * 281.86596 * 18 2 1 20 20 N 1.47581 * 86.11689 * 222.04844 * 19 18 2 21 21 C 1.36933 * 134.49736 * 204.64489 * 20 19 18 22 22 H 1.08002 * 120.00865 * 180.02562 * 21 20 19 23 23 C 1.38819 * 119.99609 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99827 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47268 * 89.99845 * 25 23 21 27 27 H 1.48496 * 109.46706 * 210.00080 * 25 23 21 28 28 H 1.48502 * 109.46944 * 329.99881 * 25 23 21 29 29 C 1.47589 * 91.01348 * 24.64319 * 20 19 18 30 30 H 1.09003 * 109.46786 * 59.76365 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.76732 * 1 2 3 32 32 H 1.08996 * 109.46700 * 299.77326 * 1 2 3 33 33 H 0.97002 * 120.00566 * 265.00669 * 4 2 1 34 34 H 1.08003 * 125.11307 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.08669 * 0.02562 * 13 12 11 36 36 H 1.08010 * 119.92311 * 180.27492 * 14 13 12 37 37 H 1.08000 * 119.84474 * 179.72426 * 15 14 13 38 38 H 1.07999 * 119.92245 * 180.02562 * 16 15 14 39 39 H 1.08007 * 120.07828 * 180.02562 * 17 16 15 40 40 H 1.09000 * 112.94439 * 53.60282 * 18 2 1 41 41 H 1.08997 * 113.77340 * 336.34818 * 19 18 2 42 42 H 1.09000 * 113.77054 * 107.75064 * 19 18 2 43 43 H 0.97004 * 119.99632 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.76651 * 221.05712 * 29 20 19 45 45 H 1.08999 * 113.76628 * 89.66073 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3572 6 8 1.8625 1.1632 -2.4106 7 6 2.6369 -0.7122 -3.5586 8 7 3.0818 -1.9941 -3.6296 9 6 3.4290 -2.2484 -4.8555 10 8 3.2290 -1.1639 -5.6178 11 6 2.7291 -0.1860 -4.8370 12 6 2.3559 1.1779 -5.2597 13 6 1.1032 1.6979 -4.9256 14 6 0.7631 2.9752 -5.3196 15 6 1.6550 3.7368 -6.0539 16 6 2.8956 3.2262 -6.3928 17 6 3.2513 1.9526 -6.0007 18 6 2.0400 -0.7213 1.2493 19 6 1.9733 0.1326 2.5285 20 7 3.3065 -0.4162 2.8440 21 6 4.0148 -0.6121 3.9993 22 1 5.0035 -1.0451 3.9600 23 6 3.4625 -0.2532 5.2213 24 7 2.2579 0.2749 5.2694 25 14 4.4291 -0.5198 6.7975 26 1 5.2410 0.6885 7.0907 27 1 3.4881 -0.7681 7.9191 28 1 5.3265 -1.6919 6.6355 29 6 3.5697 -0.6691 1.4139 30 1 -0.3633 0.5175 -0.8879 31 1 -0.3634 -1.0276 -0.0042 32 1 -0.3632 0.5103 0.8920 33 1 2.2490 -1.6319 -1.1526 34 1 3.8207 -3.1914 -5.2074 35 1 0.4043 1.1029 -4.3564 36 1 -0.2035 3.3803 -5.0582 37 1 1.3817 4.7348 -6.3636 38 1 3.5870 3.8263 -6.9657 39 1 4.2201 1.5554 -6.2656 40 1 1.6200 -1.7205 1.3642 41 1 1.9735 1.2063 2.3406 42 1 1.1943 -0.1786 3.2244 43 1 1.8722 0.5260 6.1233 44 1 4.0652 -1.6204 1.2200 45 1 4.0388 0.1691 0.8987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969800032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 46.688832 kcal Electronic energy + Delta-G solvation = -28858.964326 eV Core-core repulsion = 24844.076562 eV Total energy + Delta-G solvation = -4014.887765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.36833 -40.98313 -39.96269 -39.53732 -36.23275 -35.93463 -34.14369 -33.47856 -31.96709 -31.88940 -29.83542 -29.32262 -26.72549 -25.98580 -25.30539 -24.37232 -23.51946 -22.90494 -22.10288 -21.46834 -20.83519 -19.31476 -18.77992 -18.18753 -17.82426 -17.38667 -17.08591 -16.84847 -16.46715 -15.92197 -15.84689 -15.76087 -15.42845 -15.16701 -14.91260 -14.68637 -14.51538 -14.37850 -14.05758 -13.68468 -13.42804 -13.28292 -13.10585 -12.97499 -12.69644 -12.50128 -12.43888 -12.36786 -12.10812 -12.05601 -11.88162 -11.81571 -11.61901 -11.27946 -11.14627 -10.87758 -10.54171 -10.09497 -9.87484 -9.41152 -8.93713 -7.91461 -5.25307 -0.44961 0.44757 0.52045 1.04447 1.44513 1.46893 1.47682 1.55611 2.07321 2.22922 2.46513 2.79120 3.08083 3.28221 3.37569 3.48081 3.62860 3.82266 3.94197 3.95666 4.02206 4.20684 4.25424 4.32815 4.39364 4.43442 4.52418 4.55033 4.66263 4.74157 4.82246 4.84341 4.90604 4.92969 5.04565 5.06914 5.14605 5.23063 5.29277 5.42661 5.47038 5.48295 5.52518 5.54573 5.62822 5.93081 5.97248 6.28995 6.60284 6.91382 7.13427 7.59171 8.55257 9.25488 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002406 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.022162 B =11637.094647 C =12288.997802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.163 3.837 3 H 0.066 0.934 4 N -0.693 5.693 5 C 0.594 3.406 6 O -0.553 6.553 7 C -0.076 4.076 8 N -0.488 5.488 9 C 0.203 3.797 10 O -0.191 6.191 11 C 0.074 3.926 12 C -0.054 4.054 13 C -0.063 4.063 14 C -0.131 4.131 15 C -0.099 4.099 16 C -0.128 4.128 17 C -0.098 4.098 18 C -0.110 4.110 19 C 0.174 3.826 20 N -0.643 5.643 21 C -0.239 4.239 22 H 0.082 0.918 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.980 3.020 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.267 1.267 29 C 0.127 3.873 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.309 0.691 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.014 0.986 42 H 0.049 0.951 43 H 0.250 0.750 44 H 0.057 0.943 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -1.201 -29.422 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.058 3.942 3 H 0.085 0.915 4 N -0.343 5.343 5 C 0.380 3.620 6 O -0.432 6.432 7 C -0.196 4.196 8 N -0.216 5.216 9 C -0.025 4.025 10 O -0.078 6.078 11 C 0.017 3.983 12 C -0.055 4.055 13 C -0.082 4.082 14 C -0.149 4.149 15 C -0.117 4.117 16 C -0.146 4.146 17 C -0.116 4.116 18 C -0.130 4.130 19 C 0.048 3.952 20 N -0.369 5.369 21 C -0.367 4.367 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.192 1.192 29 C 0.002 3.998 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.324 0.676 35 H 0.130 0.870 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.121 0.879 41 H 0.031 0.969 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.977 -0.823 -28.600 28.680 hybrid contribution 0.633 -0.063 0.913 1.113 sum -1.344 -0.886 -27.687 27.734 Atomic orbital electron populations 1.22035 0.93643 1.02903 1.02227 1.20844 0.94997 0.95920 0.82398 0.91537 1.45785 1.65494 1.14678 1.08386 1.16883 0.77429 0.85544 0.82144 1.90831 1.52036 1.15415 1.84934 1.21869 1.10903 0.92490 0.94308 1.70652 1.15621 1.13149 1.22162 1.29271 0.97581 0.92279 0.83339 1.84514 1.62253 1.20753 1.40244 1.21921 0.98001 0.90034 0.88340 1.17672 0.96336 0.88022 1.03431 1.21092 0.94322 0.96605 0.96139 1.21339 1.01417 0.93410 0.98760 1.21718 0.93348 1.00701 0.95946 1.21410 0.97543 0.94982 1.00630 1.21451 0.98973 0.95056 0.96130 1.23458 0.95876 1.00403 0.93225 1.22080 0.88197 0.93714 0.91198 1.46365 1.17292 1.72219 1.01034 1.19431 0.98701 1.34405 0.84151 0.90039 1.25656 0.98167 1.01504 1.00698 1.69999 1.16679 1.48694 1.24738 0.85054 0.77397 0.77923 0.78804 1.21508 1.21740 1.19204 1.22652 0.95003 0.98157 0.84016 0.92538 0.91093 0.91356 0.75044 0.67618 0.87013 0.83840 0.82791 0.82662 0.84589 0.87866 0.96868 0.93282 0.94147 0.92498 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.44 71.98 0.68 -3.55 16 2 C 0.16 5.26 2.29 44.99 0.10 5.36 16 3 H 0.07 2.48 7.48 -2.39 -0.02 2.47 16 4 N -0.69 -20.12 4.94 -446.05 -2.21 -22.32 16 5 C 0.59 18.38 7.71 86.58 0.67 19.05 16 6 O -0.55 -19.60 13.46 -4.20 -0.06 -19.66 16 7 C -0.08 -2.03 7.04 40.93 0.29 -1.74 16 8 N -0.49 -10.78 11.04 -303.74 -3.35 -14.13 16 9 C 0.20 2.80 13.16 130.52 1.72 4.51 16 10 O -0.19 -3.49 10.75 -4.64 -0.05 -3.54 16 11 C 0.07 1.78 6.84 24.81 0.17 1.95 16 12 C -0.05 -1.28 5.27 -20.11 -0.11 -1.39 16 13 C -0.06 -1.50 7.72 22.55 0.17 -1.33 16 14 C -0.13 -2.49 10.03 22.23 0.22 -2.27 16 15 C -0.10 -1.52 10.04 22.33 0.22 -1.30 16 16 C -0.13 -1.97 10.03 22.23 0.22 -1.74 16 17 C -0.10 -1.89 9.79 22.54 0.22 -1.67 16 18 C -0.11 -4.07 3.36 -10.13 -0.03 -4.11 16 19 C 0.17 8.46 6.96 86.48 0.60 9.06 16 20 N -0.64 -34.30 3.70 -716.79 -2.65 -36.95 16 21 C -0.24 -13.85 10.70 84.04 0.90 -12.96 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 24 N -0.95 -58.49 11.38 21.65 0.25 -58.25 16 25 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 C 0.13 5.34 8.38 86.48 0.72 6.07 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 33 H 0.41 10.87 8.34 -92.71 -0.77 10.10 16 34 H 0.31 0.22 8.06 -2.91 -0.02 0.19 16 35 H 0.11 2.84 7.57 -2.91 -0.02 2.82 16 36 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.01 0.68 8.03 -2.39 -0.02 0.67 16 42 H 0.05 2.63 7.15 -2.39 -0.02 2.61 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -77.54 384.17 1.44 -76.10 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.24 Total: 19.56 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 7.24 Total: 10.51 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -7.96 Total: -131.65 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.11 Total: -23.20 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -77.54 1.44 -76.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969800032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.788 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds