Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47061 * 2 1 4 4 N 1.46494 * 109.47444 * 120.00169 * 2 1 3 5 5 C 1.34769 * 120.00251 * 274.99754 * 4 2 1 6 6 O 1.21701 * 119.99790 * 0.02562 * 5 4 2 7 7 C 1.46668 * 120.00358 * 179.97438 * 5 4 2 8 8 C 1.36728 * 125.86059 * 180.02562 * 7 5 4 9 9 C 1.39911 * 106.91392 * 179.75892 * 8 7 5 10 10 C 1.36510 * 107.02212 * 0.35645 * 9 8 7 11 11 C 1.47742 * 125.77124 * 179.90317 * 10 9 8 12 12 C 1.40035 * 120.93806 * 179.72001 * 11 10 9 13 13 C 1.37942 * 118.98337 * 180.23153 * 12 11 10 14 14 N 1.31924 * 120.91107 * 359.45195 * 13 12 11 15 15 C 1.31930 * 122.07489 * 0.58430 * 14 13 12 16 16 C 1.37944 * 120.90876 * 359.68311 * 15 14 13 17 17 O 1.34394 * 108.46795 * 359.64138 * 10 9 8 18 18 C 1.53004 * 109.47112 * 240.00374 * 2 1 3 19 19 C 1.53942 * 113.74342 * 158.73749 * 18 2 1 20 20 N 1.47817 * 86.03717 * 222.08726 * 19 18 2 21 21 C 1.36939 * 134.45586 * 204.64663 * 20 19 18 22 22 H 1.08000 * 119.99781 * 179.86329 * 21 20 19 23 23 C 1.38817 * 119.99999 * 359.86495 * 21 20 19 24 24 N 1.31616 * 119.99924 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47097 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47383 * 119.99873 * 25 23 21 28 28 H 1.48505 * 109.46921 * 239.99750 * 25 23 21 29 29 C 1.47579 * 91.05283 * 24.54985 * 20 19 18 30 30 H 1.08997 * 109.47955 * 60.00174 * 1 2 3 31 31 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47055 * 299.99163 * 1 2 3 33 33 H 0.97007 * 120.00178 * 95.00555 * 4 2 1 34 34 H 1.07994 * 126.54039 * 0.02562 * 8 7 5 35 35 H 1.08003 * 126.48948 * 180.21962 * 9 8 7 36 36 H 1.08002 * 120.50293 * 359.94824 * 12 11 10 37 37 H 1.08006 * 119.53783 * 179.71887 * 13 12 11 38 38 H 1.07998 * 119.54362 * 179.70768 * 15 14 13 39 39 H 1.07999 * 120.50578 * 179.97438 * 16 15 14 40 40 H 1.09004 * 112.94231 * 290.33163 * 18 2 1 41 41 H 1.09005 * 113.77034 * 336.34509 * 19 18 2 42 42 H 1.08997 * 113.77166 * 107.74821 * 19 18 2 43 43 H 0.96994 * 120.00081 * 179.97438 * 24 23 21 44 44 H 1.08997 * 113.76955 * 221.16010 * 29 20 19 45 45 H 1.08994 * 113.87524 * 89.76857 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1472 -0.0184 2.3570 6 8 1.8573 1.1624 2.4118 7 6 2.6356 -0.7099 3.5546 8 6 2.8111 -0.1477 4.7886 9 6 3.2839 -1.1583 5.6328 10 6 3.3856 -2.2927 4.8802 11 6 3.8481 -3.6104 5.3624 12 6 3.9074 -4.7122 4.5002 13 6 4.3409 -5.9250 4.9943 14 7 4.7064 -6.0513 6.2556 15 6 4.6657 -5.0397 7.1015 16 6 4.2402 -3.7923 6.6943 17 8 2.9884 -2.0097 3.6279 18 6 2.0400 -0.7212 -1.2493 19 6 3.4847 -0.3519 -1.6318 20 7 2.9976 -0.3174 -3.0270 21 6 3.5872 -0.4754 -4.2528 22 1 2.9924 -0.4034 -5.1514 23 6 4.9494 -0.7280 -4.3405 24 7 5.6743 -0.8153 -3.2454 25 14 5.7537 -0.9428 -6.0126 26 1 4.7284 -0.7990 -7.0772 27 1 6.8040 0.0914 -6.1933 28 1 6.3681 -2.2922 -6.0967 29 6 1.6212 -0.0470 -2.5685 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2492 -1.6318 1.1525 34 1 2.6172 0.8792 5.0607 35 1 3.5251 -1.0591 6.6809 36 1 3.6137 -4.6150 3.4654 37 1 4.3858 -6.7818 4.3383 38 1 4.9702 -5.1902 8.1267 39 1 4.2091 -2.9688 7.3924 40 1 1.8528 -1.7948 -1.2264 41 1 3.8046 0.6192 -1.2541 42 1 4.2070 -1.1446 -1.4369 43 1 6.6260 -0.9922 -3.3066 44 1 0.8585 -0.5968 -3.1200 45 1 1.3906 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969833583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = 71.005194 kcal Electronic energy + Delta-G solvation = -28237.233137 eV Core-core repulsion = 24223.399808 eV Total energy + Delta-G solvation = -4013.833328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.00711 -40.35404 -39.70426 -38.06980 -35.00455 -34.13358 -33.19753 -32.25941 -31.64273 -30.84495 -29.13709 -27.55024 -25.34539 -24.65224 -24.12396 -23.89519 -22.49804 -21.67361 -21.07676 -20.38944 -19.47527 -18.44572 -17.44307 -16.80309 -16.68489 -16.51712 -16.21429 -16.09213 -15.10339 -14.92200 -14.70467 -14.43019 -14.21354 -14.15229 -13.89594 -13.60783 -13.42760 -13.32562 -13.10505 -13.04254 -12.46600 -12.18643 -12.02875 -11.71220 -11.39854 -11.32432 -10.98017 -10.93872 -10.76546 -10.41470 -10.30150 -10.27035 -9.96165 -9.87044 -9.80376 -9.62457 -9.44579 -9.00369 -8.81607 -8.52923 -6.89082 -5.77811 -3.10204 0.05600 0.70174 1.22236 2.17653 2.18847 3.08026 3.13707 3.37940 3.43195 3.44328 3.45861 3.95241 4.04463 4.34637 4.43699 4.50106 4.53604 4.68033 4.71349 5.04535 5.11024 5.17638 5.22170 5.23736 5.32822 5.34396 5.40625 5.50526 5.60151 5.64550 5.68417 5.73339 5.89858 5.96739 6.01220 6.17199 6.19492 6.29949 6.35608 6.44779 6.54778 6.61450 6.73590 7.21446 7.33554 7.48349 7.53585 7.54570 7.96780 8.06999 9.03468 9.69856 10.58551 11.39269 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.002512 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.969469 B =11143.294468 C =12947.308969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.703 5.703 5 C 0.600 3.400 6 O -0.520 6.520 7 C -0.050 4.050 8 C -0.126 4.126 9 C -0.184 4.184 10 C 0.040 3.960 11 C 0.027 3.973 12 C -0.153 4.153 13 C 0.106 3.894 14 N -0.483 5.483 15 C 0.104 3.896 16 C -0.152 4.152 17 O -0.152 6.152 18 C -0.148 4.148 19 C 0.170 3.830 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.131 3.869 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -6.062 22.138 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.109 0.891 4 N -0.352 5.352 5 C 0.385 3.615 6 O -0.398 6.398 7 C -0.103 4.103 8 C -0.147 4.147 9 C -0.203 4.203 10 C -0.012 4.012 11 C 0.019 3.981 12 C -0.173 4.173 13 C -0.050 4.050 14 N -0.193 5.193 15 C -0.053 4.053 16 C -0.172 4.172 17 O -0.047 6.047 18 C -0.168 4.168 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.005 3.995 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.579 -6.298 21.927 23.743 hybrid contribution 0.444 0.532 -1.106 1.306 sum -6.135 -5.766 20.820 22.458 Atomic orbital electron populations 1.22142 0.95299 1.01971 1.02327 1.21225 0.93734 0.97680 0.82887 0.89058 1.46048 1.65419 1.14389 1.09310 1.16530 0.78095 0.85779 0.81138 1.90888 1.50985 1.14028 1.83871 1.22434 1.08600 0.81591 0.97664 1.21882 1.00485 1.01306 0.91002 1.21779 1.05730 0.91454 1.01371 1.20468 1.03561 0.94596 0.82529 1.18083 0.97146 0.89088 0.93778 1.22396 1.00353 0.93139 1.01426 1.22780 0.93528 0.96769 0.91925 1.67657 1.14021 1.33586 1.03991 1.22712 0.95117 0.87812 0.99612 1.22102 1.00594 0.99792 0.94681 1.84073 1.63782 1.26935 1.29947 1.23852 1.01049 0.99741 0.92130 1.22305 0.91304 0.98558 0.83352 1.46002 1.03282 1.82591 1.02022 1.19070 0.91439 1.41534 0.82948 0.90189 1.24793 0.96064 1.02395 0.97299 1.69823 1.06040 1.55212 1.25722 0.86052 0.79311 0.77384 0.83052 1.20452 1.21745 1.21710 1.22483 0.89700 0.96646 0.90709 0.91093 0.92586 0.92654 0.76047 0.81652 0.82178 0.83752 0.81988 0.82043 0.84020 0.89287 0.95565 0.91012 0.93717 0.93681 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.31 37.16 0.35 -1.69 16 2 C 0.15 2.24 2.38 -67.93 -0.16 2.08 16 3 H 0.09 1.57 7.41 -51.93 -0.39 1.18 16 4 N -0.70 -9.74 5.07 -55.12 -0.28 -10.02 16 5 C 0.60 8.84 7.75 -12.86 -0.10 8.74 16 6 O -0.52 -9.02 16.52 5.19 0.09 -8.94 16 7 C -0.05 -0.64 7.12 -36.73 -0.26 -0.90 16 8 C -0.13 -1.38 10.59 -39.50 -0.42 -1.80 16 9 C -0.18 -1.67 10.26 -39.58 -0.41 -2.08 16 10 C 0.04 0.42 7.05 -36.32 -0.26 0.16 16 11 C 0.03 0.25 5.91 -104.67 -0.62 -0.37 16 12 C -0.15 -1.35 9.82 -39.02 -0.38 -1.73 16 13 C 0.11 0.89 11.17 -17.62 -0.20 0.69 16 14 N -0.48 -4.50 10.34 -13.36 -0.14 -4.63 16 15 C 0.10 0.75 11.17 -17.62 -0.20 0.56 16 16 C -0.15 -1.07 9.64 -39.02 -0.38 -1.44 16 17 O -0.15 -1.81 10.23 3.84 0.04 -1.77 16 18 C -0.15 -2.59 3.47 -89.69 -0.31 -2.90 16 19 C 0.17 3.94 7.08 -2.84 -0.02 3.92 16 20 N -0.61 -15.63 3.70 -177.69 -0.66 -16.29 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.37 11.39 55.49 0.63 -26.74 16 25 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C 0.13 2.58 7.64 -2.96 -0.02 2.56 16 30 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 4.98 8.35 -40.82 -0.34 4.64 16 34 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.16 0.93 7.33 -52.48 -0.38 0.55 16 36 H 0.14 1.15 7.99 -52.49 -0.42 0.74 16 37 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 0.62 7.11 -52.49 -0.37 0.25 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 42 H 0.07 1.84 7.17 -51.93 -0.37 1.47 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 386.56 15.07 5.83 5.83 Total: -1.00 -34.30 386.56 -9.16 -43.46 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.01 Total: 2.91 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.64 Total: -0.97 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.44 Total: -57.68 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.12 Total: -10.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.30 -9.16 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969833583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.464 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds