Wall clock time and date at job start Sat Apr 11 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47061 * 2 1 4 4 N 1.46494 * 109.47444 * 120.00169 * 2 1 3 5 5 C 1.34769 * 120.00251 * 274.99754 * 4 2 1 6 6 O 1.21701 * 119.99790 * 0.02562 * 5 4 2 7 7 C 1.46668 * 120.00358 * 179.97438 * 5 4 2 8 8 C 1.36728 * 125.86059 * 180.02562 * 7 5 4 9 9 C 1.39911 * 106.91392 * 179.75892 * 8 7 5 10 10 C 1.36510 * 107.02212 * 0.35645 * 9 8 7 11 11 C 1.47742 * 125.77124 * 179.90317 * 10 9 8 12 12 C 1.40035 * 120.93806 * 179.72001 * 11 10 9 13 13 C 1.37942 * 118.98337 * 180.23153 * 12 11 10 14 14 N 1.31924 * 120.91107 * 359.45195 * 13 12 11 15 15 C 1.31930 * 122.07489 * 0.58430 * 14 13 12 16 16 C 1.37944 * 120.90876 * 359.68311 * 15 14 13 17 17 O 1.34394 * 108.46795 * 359.64138 * 10 9 8 18 18 C 1.53004 * 109.47112 * 240.00374 * 2 1 3 19 19 C 1.53942 * 113.74342 * 158.73749 * 18 2 1 20 20 N 1.47817 * 86.03717 * 222.08726 * 19 18 2 21 21 C 1.36939 * 134.45586 * 204.64663 * 20 19 18 22 22 H 1.08000 * 119.99781 * 179.86329 * 21 20 19 23 23 C 1.38817 * 119.99999 * 359.86495 * 21 20 19 24 24 N 1.31616 * 119.99924 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47097 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47383 * 119.99873 * 25 23 21 28 28 H 1.48505 * 109.46921 * 239.99750 * 25 23 21 29 29 C 1.47579 * 91.05283 * 24.54985 * 20 19 18 30 30 H 1.08997 * 109.47955 * 60.00174 * 1 2 3 31 31 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47055 * 299.99163 * 1 2 3 33 33 H 0.97007 * 120.00178 * 95.00555 * 4 2 1 34 34 H 1.07994 * 126.54039 * 0.02562 * 8 7 5 35 35 H 1.08003 * 126.48948 * 180.21962 * 9 8 7 36 36 H 1.08002 * 120.50293 * 359.94824 * 12 11 10 37 37 H 1.08006 * 119.53783 * 179.71887 * 13 12 11 38 38 H 1.07998 * 119.54362 * 179.70768 * 15 14 13 39 39 H 1.07999 * 120.50578 * 179.97438 * 16 15 14 40 40 H 1.09004 * 112.94231 * 290.33163 * 18 2 1 41 41 H 1.09005 * 113.77034 * 336.34509 * 19 18 2 42 42 H 1.08997 * 113.77166 * 107.74821 * 19 18 2 43 43 H 0.96994 * 120.00081 * 179.97438 * 24 23 21 44 44 H 1.08997 * 113.76955 * 221.16010 * 29 20 19 45 45 H 1.08994 * 113.87524 * 89.76857 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1472 -0.0184 2.3570 6 8 1.8573 1.1624 2.4118 7 6 2.6356 -0.7099 3.5546 8 6 2.8111 -0.1477 4.7886 9 6 3.2839 -1.1583 5.6328 10 6 3.3856 -2.2927 4.8802 11 6 3.8481 -3.6104 5.3624 12 6 3.9074 -4.7122 4.5002 13 6 4.3409 -5.9250 4.9943 14 7 4.7064 -6.0513 6.2556 15 6 4.6657 -5.0397 7.1015 16 6 4.2402 -3.7923 6.6943 17 8 2.9884 -2.0097 3.6279 18 6 2.0400 -0.7212 -1.2493 19 6 3.4847 -0.3519 -1.6318 20 7 2.9976 -0.3174 -3.0270 21 6 3.5872 -0.4754 -4.2528 22 1 2.9924 -0.4034 -5.1514 23 6 4.9494 -0.7280 -4.3405 24 7 5.6743 -0.8153 -3.2454 25 14 5.7537 -0.9428 -6.0126 26 1 4.7284 -0.7990 -7.0772 27 1 6.8040 0.0914 -6.1933 28 1 6.3681 -2.2922 -6.0967 29 6 1.6212 -0.0470 -2.5685 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2492 -1.6318 1.1525 34 1 2.6172 0.8792 5.0607 35 1 3.5251 -1.0591 6.6809 36 1 3.6137 -4.6150 3.4654 37 1 4.3858 -6.7818 4.3383 38 1 4.9702 -5.1902 8.1267 39 1 4.2091 -2.9688 7.3924 40 1 1.8528 -1.7948 -1.2264 41 1 3.8046 0.6192 -1.2541 42 1 4.2070 -1.1446 -1.4369 43 1 6.6260 -0.9922 -3.3066 44 1 0.8585 -0.5968 -3.1200 45 1 1.3906 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969833583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:03 Heat of formation + Delta-G solvation = 48.847120 kcal Electronic energy + Delta-G solvation = -28238.193983 eV Core-core repulsion = 24223.399808 eV Total energy + Delta-G solvation = -4014.794174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.84337 -41.08749 -40.84082 -39.63808 -36.35697 -34.87995 -34.19551 -33.98492 -32.22357 -32.13984 -30.05984 -29.34995 -26.74219 -25.93824 -25.44062 -24.70182 -23.60141 -22.46314 -22.33729 -21.47651 -20.84923 -19.47918 -18.77675 -18.30803 -17.63465 -17.46124 -17.08854 -16.93734 -16.71998 -16.14570 -15.80890 -15.75587 -15.36458 -14.92683 -14.87671 -14.70564 -14.66852 -14.37749 -14.10025 -14.02640 -13.75868 -13.47006 -13.29132 -13.11186 -12.93894 -12.74224 -12.60073 -12.56669 -12.00649 -11.77979 -11.68223 -11.61727 -11.40441 -11.20514 -11.08060 -10.89659 -10.57189 -10.23036 -10.19185 -9.34476 -8.93921 -7.92122 -5.25828 -0.69633 0.13252 0.38015 1.32758 1.43624 1.44032 1.45222 1.55515 2.00694 2.07506 2.45799 2.84105 3.17087 3.28803 3.35484 3.54373 3.60801 3.73937 3.76755 3.89216 3.94217 4.00478 4.11531 4.25881 4.42479 4.43186 4.48569 4.56497 4.58533 4.72329 4.74549 4.79261 4.83395 4.83823 4.95062 4.97822 5.03331 5.07147 5.23497 5.28414 5.31661 5.35351 5.52176 5.62185 5.63864 5.70298 5.91622 6.37519 6.89949 6.94732 6.95123 7.59369 8.54742 9.24857 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.002512 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.969469 B =11143.294468 C =12947.308969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.068 0.932 4 N -0.700 5.700 5 C 0.600 3.400 6 O -0.553 6.553 7 C -0.083 4.083 8 C -0.119 4.119 9 C -0.176 4.176 10 C 0.039 3.961 11 C 0.007 3.993 12 C -0.165 4.165 13 C 0.097 3.903 14 N -0.506 5.506 15 C 0.100 3.900 16 C -0.141 4.141 17 O -0.164 6.164 18 C -0.111 4.111 19 C 0.166 3.834 20 N -0.645 5.645 21 C -0.232 4.232 22 H 0.086 0.914 23 C -0.071 4.071 24 N -0.955 5.955 25 Si 0.979 3.021 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.291 1.291 29 C 0.132 3.868 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.412 0.588 34 H 0.175 0.825 35 H 0.198 0.802 36 H 0.143 0.857 37 H 0.178 0.822 38 H 0.193 0.807 39 H 0.174 0.826 40 H 0.103 0.897 41 H 0.005 0.995 42 H 0.039 0.961 43 H 0.247 0.753 44 H 0.067 0.933 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -6.741 23.611 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 H 0.087 0.913 4 N -0.349 5.349 5 C 0.387 3.613 6 O -0.434 6.434 7 C -0.135 4.135 8 C -0.139 4.139 9 C -0.195 4.195 10 C -0.013 4.013 11 C -0.001 4.001 12 C -0.185 4.185 13 C -0.059 4.059 14 N -0.216 5.216 15 C -0.056 4.056 16 C -0.160 4.160 17 O -0.060 6.060 18 C -0.131 4.131 19 C 0.041 3.959 20 N -0.372 5.372 21 C -0.361 4.361 22 H 0.104 0.896 23 C -0.264 4.264 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.218 1.218 29 C 0.007 3.993 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.193 0.807 35 H 0.215 0.785 36 H 0.161 0.839 37 H 0.195 0.805 38 H 0.210 0.790 39 H 0.191 0.809 40 H 0.122 0.878 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.670 -6.990 23.395 25.593 hybrid contribution 0.785 0.704 -1.455 1.797 sum -6.886 -6.286 21.940 23.839 Atomic orbital electron populations 1.22065 0.92757 1.03264 1.02742 1.20991 0.95482 0.96024 0.82188 0.91343 1.45967 1.65347 1.14679 1.08922 1.16723 0.77445 0.85468 0.81675 1.90855 1.52632 1.15349 1.84578 1.22106 1.11446 0.82374 0.97597 1.22189 0.99055 1.02126 0.90570 1.22167 1.04616 0.89975 1.02759 1.20931 1.02696 0.95581 0.82065 1.18289 0.98320 0.88560 0.94936 1.22497 1.00822 0.93586 1.01624 1.23035 0.93472 0.97183 0.92164 1.67693 1.14620 1.34789 1.04483 1.23281 0.94280 0.87435 1.00642 1.22444 0.98827 1.00684 0.94091 1.84039 1.64287 1.26537 1.31113 1.23463 0.96331 1.00554 0.92723 1.22182 0.93964 0.96475 0.83282 1.46442 1.05955 1.82864 1.01924 1.19495 0.91910 1.40272 0.84403 0.89610 1.25665 0.96840 1.03049 1.00838 1.70024 1.05782 1.56820 1.27775 0.84996 0.78220 0.76757 0.79282 1.18725 1.22230 1.21755 1.22680 0.87600 0.97709 0.91289 0.90147 0.90825 0.92780 0.75161 0.80710 0.78454 0.83895 0.80514 0.79027 0.80886 0.87844 0.97733 0.94214 0.94406 0.91525 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.31 71.98 0.67 -2.90 16 2 C 0.16 4.71 2.38 44.99 0.11 4.81 16 3 H 0.07 2.40 7.41 -2.38 -0.02 2.38 16 4 N -0.70 -19.58 5.07 -446.52 -2.27 -21.84 16 5 C 0.60 18.02 7.75 86.45 0.67 18.69 16 6 O -0.55 -19.65 16.52 -4.35 -0.07 -19.72 16 7 C -0.08 -2.12 7.12 24.12 0.17 -1.94 16 8 C -0.12 -2.47 10.59 22.32 0.24 -2.23 16 9 C -0.18 -2.78 10.26 22.27 0.23 -2.55 16 10 C 0.04 0.75 7.05 24.38 0.17 0.92 16 11 C 0.01 0.12 5.91 -19.89 -0.12 0.00 16 12 C -0.17 -2.85 9.82 22.64 0.22 -2.63 16 13 C 0.10 1.57 11.17 84.61 0.94 2.51 16 14 N -0.51 -8.71 10.34 -196.17 -2.03 -10.74 16 15 C 0.10 1.20 11.17 84.61 0.95 2.14 16 16 C -0.14 -1.59 9.64 22.64 0.22 -1.37 16 17 O -0.16 -3.89 10.23 -9.18 -0.09 -3.98 16 18 C -0.11 -3.85 3.47 -10.13 -0.04 -3.89 16 19 C 0.17 7.99 7.08 86.44 0.61 8.60 16 20 N -0.65 -33.25 3.70 -716.08 -2.65 -35.91 16 21 C -0.23 -13.15 10.70 84.03 0.90 -12.25 16 22 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 24 N -0.95 -58.68 11.39 21.65 0.25 -58.43 16 25 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 29 C 0.13 5.06 7.64 86.49 0.66 5.72 16 30 H 0.08 1.77 7.52 -2.39 -0.02 1.75 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.41 10.22 8.35 -92.70 -0.77 9.45 16 34 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.20 1.45 7.33 -2.91 -0.02 1.43 16 36 H 0.14 2.37 7.99 -2.91 -0.02 2.34 16 37 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 39 H 0.17 0.75 7.11 -2.91 -0.02 0.73 16 40 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 41 H 0.00 0.25 7.99 -2.38 -0.02 0.23 16 42 H 0.04 2.14 7.17 -2.39 -0.02 2.12 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -76.69 386.56 2.48 -74.21 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.25 Total: 18.14 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 7.07 Total: 9.99 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -6.70 Total: -126.92 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.17 Total: -23.70 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -76.69 2.48 -74.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969833583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.055 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds