Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21547 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.47927 * 119.99820 * 180.02562 * 5 4 2 8 8 C 1.38259 * 119.24113 * 180.02562 * 7 5 4 9 9 C 1.40692 * 118.65206 * 179.97438 * 8 7 5 10 10 C 1.40234 * 122.05529 * 179.97438 * 9 8 7 11 11 C 1.36318 * 119.48146 * 180.02562 * 10 9 8 12 12 C 1.39252 * 120.94089 * 359.97438 * 11 10 9 13 13 C 1.36356 * 121.05935 * 0.02562 * 12 11 10 14 14 C 1.40043 * 119.59416 * 0.02562 * 13 12 11 15 15 C 1.41350 * 121.85866 * 179.97438 * 14 13 12 16 16 O 1.35498 * 119.95079 * 359.97438 * 15 14 13 17 17 N 1.31386 * 120.09650 * 179.74490 * 15 14 13 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 32 32 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08002 * 120.67594 * 359.97438 * 8 7 5 35 35 H 1.08001 * 120.26097 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.53032 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.46915 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.20192 * 179.97438 * 13 12 11 39 39 H 0.96701 * 113.99620 * 89.99979 * 16 15 14 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1611 -2.4116 7 6 2.6397 -0.7158 -3.5650 8 6 2.7661 -0.0109 -4.7476 9 6 3.2363 -0.6864 -5.8887 10 6 3.3914 -0.0415 -7.1243 11 6 3.8508 -0.7471 -8.1963 12 6 4.1685 -2.0980 -8.0814 13 6 4.0293 -2.7550 -6.8947 14 6 3.5589 -2.0626 -5.7720 15 6 3.3959 -2.6962 -4.5190 16 8 3.6974 -4.0100 -4.3809 17 7 2.9566 -2.0120 -3.4869 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.5092 1.0371 -4.7946 35 1 3.1487 1.0060 -7.2257 36 1 3.9702 -0.2513 -9.1484 37 1 4.5311 -2.6339 -8.9461 38 1 4.2794 -3.8031 -6.8214 39 1 4.6147 -4.1782 -4.1251 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969833871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 43.622626 kcal Electronic energy + Delta-G solvation = -28692.714620 eV Core-core repulsion = 24677.693895 eV Total energy + Delta-G solvation = -4015.020725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50542 -39.90054 -38.61320 -38.32746 -36.89870 -35.05856 -32.76881 -32.41987 -31.80016 -30.70755 -29.67998 -27.71948 -25.64100 -24.97833 -24.45599 -23.65657 -22.58832 -21.59609 -20.57473 -19.74759 -18.94940 -18.38982 -17.96429 -17.45282 -16.97988 -16.29413 -16.12950 -15.75735 -15.26720 -15.05714 -14.89110 -14.48825 -14.31342 -13.97038 -13.77668 -13.70662 -13.51809 -13.14345 -12.97253 -12.44362 -12.43059 -12.18632 -12.15755 -11.87153 -11.78989 -11.70444 -11.48270 -10.91417 -10.63630 -10.57525 -10.46825 -10.32553 -10.20400 -9.70840 -9.63283 -9.23404 -9.10817 -8.90349 -8.87395 -8.45199 -7.13571 -6.27051 -3.20722 -0.25125 0.22593 1.33891 2.09198 2.93520 3.02409 3.16700 3.42868 3.47262 3.63734 3.66798 4.04627 4.10999 4.27874 4.37812 4.55678 4.61909 4.68524 4.71962 4.81392 4.94471 4.96772 5.13344 5.22024 5.27729 5.43668 5.45483 5.47045 5.51969 5.62121 5.79199 5.84916 5.88654 5.91163 5.96544 6.04175 6.19123 6.26672 6.26943 6.30337 6.34132 6.42694 6.61130 6.95009 7.01058 7.15102 7.29134 7.62390 8.17664 8.25971 9.00147 9.52590 10.39645 11.22968 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002628 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.546914 B =10652.290472 C =11509.775842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.092 0.908 4 N -0.698 5.698 5 C 0.571 3.429 6 O -0.536 6.536 7 C 0.083 3.917 8 C -0.094 4.094 9 C -0.023 4.023 10 C -0.103 4.103 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.083 4.083 14 C -0.108 4.108 15 C 0.355 3.645 16 O -0.473 6.473 17 N -0.484 5.484 18 C -0.139 4.139 19 C 0.135 3.865 20 N -0.629 5.629 21 C -0.302 4.302 22 H 0.083 0.917 23 C -0.026 4.026 24 N -0.935 5.935 25 Si 1.070 2.930 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.103 3.897 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.411 0.589 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.406 0.594 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -3.142 -31.579 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.110 0.890 4 N -0.348 5.348 5 C 0.355 3.645 6 O -0.413 6.413 7 C -0.043 4.043 8 C -0.115 4.115 9 C -0.028 4.028 10 C -0.121 4.121 11 C -0.116 4.116 12 C -0.132 4.132 13 C -0.102 4.102 14 C -0.112 4.112 15 C 0.160 3.840 16 O -0.280 6.280 17 N -0.205 5.205 18 C -0.159 4.159 19 C 0.008 3.992 20 N -0.357 5.357 21 C -0.428 4.428 22 H 0.101 0.899 23 C -0.224 4.224 24 N -0.577 5.577 25 Si 0.903 3.097 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.214 1.214 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.247 0.753 34 H 0.175 0.825 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.265 0.735 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.065 -2.860 -31.084 31.478 hybrid contribution -0.901 -0.004 -0.066 0.904 sum -4.966 -2.864 -31.149 31.673 Atomic orbital electron populations 1.22121 0.95005 1.02139 1.02375 1.21103 0.94093 0.97481 0.82828 0.89042 1.45983 1.65015 1.14841 1.08948 1.17761 0.78048 0.86015 0.82682 1.90791 1.50961 1.14884 1.84681 1.20627 1.00628 0.88539 0.94520 1.22220 0.96522 1.01865 0.90854 1.18069 0.97793 0.92290 0.94602 1.21063 0.99286 1.00470 0.91304 1.21070 0.97087 0.94422 0.99031 1.21037 0.99460 0.94774 0.97960 1.20974 0.97384 1.00288 0.91574 1.19058 1.02753 0.93884 0.95476 1.19105 0.93673 0.84113 0.87095 1.84724 1.35251 1.17521 1.90549 1.66846 1.12429 1.07809 1.33385 1.23563 0.99017 1.00408 0.92955 1.22257 0.90039 0.97143 0.89786 1.45968 1.04103 1.83733 1.01921 1.20157 0.92132 1.47473 0.83055 0.89932 1.25709 0.94242 0.99341 1.03147 1.70912 1.37280 1.52377 0.97170 0.83718 0.75679 0.76245 0.74083 1.22271 1.22134 1.21437 1.22831 0.94826 0.98462 0.86138 0.92446 0.91114 0.92502 0.75306 0.82511 0.84394 0.85107 0.85176 0.84357 0.73457 0.88280 0.93474 0.94267 0.92963 0.93755 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.29 37.16 0.35 -1.70 16 2 C 0.15 2.23 2.47 -67.93 -0.17 2.07 16 3 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 4 N -0.70 -9.91 5.06 -54.72 -0.28 -10.19 16 5 C 0.57 8.42 7.76 -12.29 -0.10 8.32 16 6 O -0.54 -9.04 15.93 5.32 0.08 -8.96 16 7 C 0.08 1.06 6.73 -83.09 -0.56 0.50 16 8 C -0.09 -1.02 9.41 -38.65 -0.36 -1.38 16 9 C -0.02 -0.21 5.74 -106.84 -0.61 -0.83 16 10 C -0.10 -0.70 9.81 -39.52 -0.39 -1.09 16 11 C -0.10 -0.52 9.95 -39.90 -0.40 -0.92 16 12 C -0.11 -0.61 9.95 -39.88 -0.40 -1.01 16 13 C -0.08 -0.55 9.58 -39.58 -0.38 -0.93 16 14 C -0.11 -0.99 5.76 -106.66 -0.61 -1.61 16 15 C 0.36 3.68 7.80 -16.56 -0.13 3.55 16 16 O -0.47 -3.87 12.83 -18.19 -0.23 -4.10 16 17 N -0.48 -6.00 9.47 -9.60 -0.09 -6.10 16 18 C -0.14 -2.40 3.67 -89.96 -0.33 -2.73 16 19 C 0.13 2.65 7.33 -8.50 -0.06 2.59 16 20 N -0.63 -15.83 3.69 -184.57 -0.68 -16.51 16 21 C -0.30 -8.90 11.08 -15.06 -0.17 -9.07 16 22 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 23 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 24 N -0.94 -30.07 13.70 55.49 0.76 -29.31 16 25 Si 1.07 27.60 25.16 -169.99 -4.28 23.33 16 26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.29 -7.12 6.51 56.52 0.37 -6.76 16 28 H -0.29 -7.03 6.21 56.52 0.35 -6.67 16 29 C 0.10 2.23 5.27 -8.36 -0.04 2.19 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.41 5.47 7.90 -40.82 -0.32 5.15 16 34 H 0.16 1.55 7.59 -52.49 -0.40 1.15 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 37 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.14 0.66 7.65 -52.48 -0.40 0.26 16 39 H 0.41 1.42 9.06 45.56 0.41 1.84 16 40 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 44 H 0.04 0.97 7.44 -51.93 -0.39 0.59 16 45 H 0.05 1.15 4.73 -51.93 -0.25 0.91 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -36.92 373.58 -8.69 -45.61 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.15 Total: 3.51 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -4.46 Total: -2.92 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.29 Total: -62.10 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.15 Total: -13.06 kcal Atomic # 14 Polarization: 27.60 SS G_CDS: -4.28 Total: 23.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.92 -8.69 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969833871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.231 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds