Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21547 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.47927 * 119.99820 * 180.02562 * 5 4 2 8 8 C 1.38259 * 119.24113 * 180.02562 * 7 5 4 9 9 C 1.40692 * 118.65206 * 179.97438 * 8 7 5 10 10 C 1.40234 * 122.05529 * 179.97438 * 9 8 7 11 11 C 1.36318 * 119.48146 * 180.02562 * 10 9 8 12 12 C 1.39252 * 120.94089 * 359.97438 * 11 10 9 13 13 C 1.36356 * 121.05935 * 0.02562 * 12 11 10 14 14 C 1.40043 * 119.59416 * 0.02562 * 13 12 11 15 15 C 1.41350 * 121.85866 * 179.97438 * 14 13 12 16 16 O 1.35498 * 119.95079 * 359.97438 * 15 14 13 17 17 N 1.31386 * 120.09650 * 179.74490 * 15 14 13 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 32 32 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08002 * 120.67594 * 359.97438 * 8 7 5 35 35 H 1.08001 * 120.26097 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.53032 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.46915 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.20192 * 179.97438 * 13 12 11 39 39 H 0.96701 * 113.99620 * 89.99979 * 16 15 14 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1611 -2.4116 7 6 2.6397 -0.7158 -3.5650 8 6 2.7661 -0.0109 -4.7476 9 6 3.2363 -0.6864 -5.8887 10 6 3.3914 -0.0415 -7.1243 11 6 3.8508 -0.7471 -8.1963 12 6 4.1685 -2.0980 -8.0814 13 6 4.0293 -2.7550 -6.8947 14 6 3.5589 -2.0626 -5.7720 15 6 3.3959 -2.6962 -4.5190 16 8 3.6974 -4.0100 -4.3809 17 7 2.9566 -2.0120 -3.4869 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.5092 1.0371 -4.7946 35 1 3.1487 1.0060 -7.2257 36 1 3.9702 -0.2513 -9.1484 37 1 4.5311 -2.6339 -8.9461 38 1 4.2794 -3.8031 -6.8214 39 1 4.6147 -4.1782 -4.1251 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969833871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 14.009476 kcal Electronic energy + Delta-G solvation = -28693.998743 eV Core-core repulsion = 24677.693895 eV Total energy + Delta-G solvation = -4016.304848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20667 -41.10294 -40.04610 -38.91225 -37.63441 -36.38464 -34.56082 -33.34862 -32.60083 -31.76802 -30.47143 -29.49887 -27.14486 -26.05238 -25.13398 -25.05766 -23.18017 -22.96619 -21.75426 -21.22186 -19.87228 -19.57892 -19.13259 -18.64953 -17.85496 -17.41864 -16.97817 -16.93532 -16.46399 -16.09255 -15.93945 -15.77804 -15.21821 -15.16473 -15.01440 -14.85198 -14.56060 -14.37091 -14.10071 -13.70048 -13.36162 -13.27124 -13.16229 -12.99247 -12.88234 -12.79516 -12.55912 -12.39255 -12.17314 -12.14904 -11.75443 -11.53762 -11.29528 -11.14643 -11.11849 -10.87902 -10.56633 -10.23263 -10.10227 -9.25442 -9.09130 -8.63900 -5.50015 -0.90814 -0.40262 0.76268 1.30667 1.34465 1.43847 1.62942 1.97915 2.23478 2.40491 2.49639 2.93778 2.95443 3.15133 3.27217 3.46432 3.53346 3.66556 3.80950 3.81687 3.99020 4.17056 4.24401 4.26116 4.34574 4.38795 4.42092 4.55005 4.62347 4.63255 4.65216 4.66505 4.77978 4.84292 4.91273 5.00086 5.00975 5.16775 5.27033 5.33027 5.36907 5.37488 5.44919 5.50529 5.82856 5.92577 6.32323 6.53644 6.67507 6.72220 7.09501 7.29852 8.25019 8.87751 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002628 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.546914 B =10652.290472 C =11509.775842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.077 0.923 4 N -0.696 5.696 5 C 0.570 3.430 6 O -0.565 6.565 7 C 0.054 3.946 8 C -0.090 4.090 9 C -0.041 4.041 10 C -0.112 4.112 11 C -0.090 4.090 12 C -0.104 4.104 13 C -0.091 4.091 14 C -0.118 4.118 15 C 0.353 3.647 16 O -0.477 6.477 17 N -0.509 5.509 18 C -0.106 4.106 19 C 0.133 3.867 20 N -0.662 5.662 21 C -0.289 4.289 22 H 0.054 0.946 23 C -0.086 4.086 24 N -0.970 5.970 25 Si 1.108 2.892 26 H -0.302 1.302 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.094 3.906 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.415 0.585 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.425 0.575 40 H 0.112 0.888 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.247 0.753 44 H 0.045 0.955 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -3.855 -36.136 36.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 H 0.095 0.905 4 N -0.346 5.346 5 C 0.356 3.644 6 O -0.445 6.445 7 C -0.071 4.071 8 C -0.111 4.111 9 C -0.045 4.045 10 C -0.130 4.130 11 C -0.108 4.108 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.122 4.122 15 C 0.158 3.842 16 O -0.287 6.287 17 N -0.231 5.231 18 C -0.125 4.125 19 C 0.007 3.993 20 N -0.391 5.391 21 C -0.416 4.416 22 H 0.072 0.928 23 C -0.277 4.277 24 N -0.616 5.616 25 Si 0.934 3.066 26 H -0.230 1.230 27 H -0.197 1.197 28 H -0.196 1.196 29 C -0.031 4.031 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.287 0.713 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.274 -3.590 -35.672 36.106 hybrid contribution -0.897 0.179 1.178 1.492 sum -5.171 -3.410 -34.493 35.045 Atomic orbital electron populations 1.22060 0.93090 1.03103 1.02671 1.20911 0.95427 0.96265 0.82129 0.90520 1.45912 1.65045 1.14981 1.08646 1.18065 0.77339 0.85726 0.83242 1.90759 1.52393 1.16082 1.85267 1.20332 1.03300 0.89193 0.94233 1.22321 0.95901 1.01902 0.90979 1.18277 0.98465 0.92701 0.95091 1.21341 0.99439 1.01528 0.90712 1.21513 0.95058 0.94518 0.99746 1.21496 0.97431 0.94893 0.98358 1.21240 0.97372 1.01224 0.91252 1.19250 1.03028 0.94040 0.95844 1.19306 0.93148 0.84500 0.87266 1.84681 1.36985 1.16433 1.90621 1.66731 1.13989 1.07802 1.34608 1.23254 0.95334 1.01073 0.92883 1.22475 0.87941 0.98311 0.90527 1.46108 1.07006 1.84197 1.01746 1.20053 0.91977 1.45277 0.84336 0.92791 1.26978 0.96198 0.99813 1.04759 1.71005 1.37381 1.55581 0.97608 0.83255 0.73651 0.77902 0.71743 1.23013 1.19683 1.19555 1.23013 0.97196 0.98507 0.84391 0.91148 0.90282 0.92750 0.74747 0.82371 0.82764 0.81970 0.82024 0.82634 0.71285 0.86959 0.92374 0.92831 0.94386 0.93706 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.29 71.98 0.67 -2.94 16 2 C 0.16 4.48 2.47 44.99 0.11 4.59 16 3 H 0.08 2.46 7.32 -2.39 -0.02 2.44 16 4 N -0.70 -19.18 5.06 -445.32 -2.26 -21.44 16 5 C 0.57 16.82 7.76 86.81 0.67 17.49 16 6 O -0.57 -19.23 15.93 -3.86 -0.06 -19.29 16 7 C 0.05 1.39 6.73 41.44 0.28 1.67 16 8 C -0.09 -1.93 9.41 22.87 0.22 -1.72 16 9 C -0.04 -0.71 5.74 -21.30 -0.12 -0.83 16 10 C -0.11 -1.24 9.81 22.31 0.22 -1.02 16 11 C -0.09 -0.60 9.95 22.07 0.22 -0.38 16 12 C -0.10 -0.67 9.95 22.07 0.22 -0.45 16 13 C -0.09 -0.94 9.58 22.27 0.21 -0.73 16 14 C -0.12 -1.98 5.76 -21.19 -0.12 -2.10 16 15 C 0.35 6.98 7.80 85.53 0.67 7.65 16 16 O -0.48 -7.09 12.83 -87.99 -1.13 -8.22 16 17 N -0.51 -12.50 9.47 -297.68 -2.82 -15.32 16 18 C -0.11 -3.45 3.67 -10.37 -0.04 -3.48 16 19 C 0.13 5.02 7.33 83.18 0.61 5.63 16 20 N -0.66 -32.98 3.69 -737.86 -2.72 -35.70 16 21 C -0.29 -17.34 11.08 84.03 0.93 -16.41 16 22 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 23 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 24 N -0.97 -64.38 13.70 21.65 0.30 -64.08 16 25 Si 1.11 56.01 25.16 68.60 1.73 57.74 16 26 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 27 H -0.27 -12.51 6.51 99.48 0.65 -11.86 16 28 H -0.27 -12.69 6.21 99.48 0.62 -12.08 16 29 C 0.09 3.94 5.27 83.27 0.44 4.38 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 1.75 7.48 -2.39 -0.02 1.74 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.42 10.66 7.90 -92.71 -0.73 9.93 16 34 H 0.16 3.16 7.59 -2.91 -0.02 3.14 16 35 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.16 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.16 0.99 7.65 -2.91 -0.02 0.96 16 39 H 0.42 2.29 9.06 -74.06 -0.67 1.62 16 40 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 43 H 0.25 16.40 8.73 -92.71 -0.81 15.59 16 44 H 0.05 1.91 7.44 -2.39 -0.02 1.89 16 45 H 0.05 2.00 4.73 -2.39 -0.01 1.99 16 Total: -1.00 -82.60 373.58 -1.86 -84.45 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -0.54 Total: 15.34 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.65 Total: 6.51 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -7.50 Total: -136.53 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.19 Total: -27.51 kcal Atomic # 14 Polarization: 56.01 SS G_CDS: 1.73 Total: 57.74 kcal Total: -82.60 -1.86 -84.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969833871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.461 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds