Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21708 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.46575 * 120.00429 * 180.02562 * 5 4 2 8 8 C 1.36564 * 126.56680 * 180.02562 * 7 5 4 9 9 N 1.33314 * 107.65517 * 179.97438 * 8 7 5 10 10 C 1.31626 * 108.95691 * 359.97438 * 9 8 7 11 11 C 1.47705 * 125.54321 * 179.97438 * 10 9 8 12 12 C 1.39646 * 120.15188 * 179.74897 * 11 10 9 13 13 C 1.37941 * 119.84250 * 179.67866 * 12 11 10 14 14 C 1.38363 * 120.15422 * 0.61899 * 13 12 11 15 15 C 1.38375 * 120.30634 * 359.67860 * 14 13 12 16 16 C 1.37944 * 120.14790 * 359.97438 * 15 14 13 17 17 O 1.34211 * 108.91899 * 359.75378 * 10 9 8 18 18 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 19 19 C 1.53497 * 114.20384 * 299.99367 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 32 32 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 33 33 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 34 34 H 1.08006 * 126.17005 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.07160 * 359.97391 * 12 11 10 36 36 H 1.08006 * 119.91804 * 180.34130 * 13 12 11 37 37 H 1.07997 * 119.85015 * 179.69810 * 14 13 12 38 38 H 1.07996 * 119.92450 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.07473 * 180.02562 * 16 15 14 40 40 H 1.09008 * 113.41028 * 166.80073 * 18 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 43 43 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8581 1.1627 -2.4117 7 6 2.6350 -0.7094 -3.5541 8 6 2.8165 -0.1625 -4.7922 9 7 3.2721 -1.1236 -5.5959 10 6 3.3806 -2.2405 -4.9081 11 6 3.8512 -3.5351 -5.4414 12 6 3.9271 -4.6518 -4.6064 13 6 4.3612 -5.8593 -5.1127 14 6 4.7330 -5.9624 -6.4414 15 6 4.6661 -4.8584 -7.2730 16 6 4.2271 -3.6465 -6.7816 17 8 2.9988 -2.0108 -3.6421 18 6 2.0400 -0.7214 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 0.3745 -0.9091 2.4946 21 6 -0.9129 -0.8126 2.9512 22 1 -1.2551 0.1019 3.4126 23 6 -1.7781 -1.8901 2.8209 24 7 -3.0736 -1.7165 2.9761 25 14 -1.1040 -3.5868 2.4255 26 1 -1.0532 -3.7683 0.9525 27 1 0.2639 -3.7194 2.9881 28 1 -1.9868 -4.6215 3.0217 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1526 34 1 2.6253 0.8636 -5.0700 35 1 3.6421 -4.5713 -3.5678 36 1 4.4151 -6.7251 -4.4693 37 1 5.0767 -6.9090 -6.8315 38 1 4.9575 -4.9460 -8.3092 39 1 4.1750 -2.7857 -7.4317 40 1 3.1026 -0.9610 1.2076 41 1 1.3946 0.9849 2.4938 42 1 2.2319 -0.3356 3.4158 43 1 -3.4174 -0.8529 3.2536 44 1 1.6789 -2.6124 2.3358 45 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969907918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 86.525166 kcal Electronic energy + Delta-G solvation = -28773.091928 eV Core-core repulsion = 24759.931597 eV Total energy + Delta-G solvation = -4013.160332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.63300 -40.07746 -39.45747 -38.71450 -35.40817 -34.64531 -32.81514 -32.41812 -31.44653 -30.55134 -29.08956 -28.00134 -25.41150 -25.06571 -24.08057 -23.57861 -22.53690 -21.64947 -21.28363 -20.50954 -19.34599 -18.38460 -17.67784 -17.37809 -17.15191 -16.45814 -16.11855 -15.62097 -15.35704 -15.20388 -14.87974 -14.66794 -14.09929 -14.04844 -13.92744 -13.77097 -13.68336 -13.35379 -13.29531 -12.61415 -11.97620 -11.94634 -11.81598 -11.76104 -11.62694 -11.40635 -11.24281 -11.12034 -10.79875 -10.60167 -10.37872 -10.35209 -10.16043 -10.04252 -9.47861 -9.46420 -9.20365 -9.04927 -8.67485 -8.62051 -7.16044 -6.31392 -3.23988 0.01990 0.90526 1.06799 2.01131 2.26771 2.99320 3.05516 3.35499 3.35883 3.43380 3.52595 3.58078 4.36677 4.46053 4.56003 4.59047 4.63375 4.66922 4.74804 4.90186 4.94649 4.99429 5.05805 5.13468 5.27889 5.39060 5.41164 5.54483 5.60929 5.77462 5.78944 5.91776 5.97570 5.98388 6.01198 6.10936 6.18452 6.26625 6.33247 6.35312 6.38785 6.50924 6.72986 6.85521 7.10036 7.17593 7.25201 7.45988 8.00501 8.22720 8.95796 9.49088 10.35578 11.18167 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002753 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.284404 B =10167.002352 C =11517.669767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.171 3.829 3 H 0.088 0.912 4 N -0.706 5.706 5 C 0.606 3.394 6 O -0.515 6.515 7 C -0.100 4.100 8 C 0.055 3.945 9 N -0.477 5.477 10 C 0.256 3.744 11 C -0.027 4.027 12 C -0.084 4.084 13 C -0.121 4.121 14 C -0.097 4.097 15 C -0.124 4.124 16 C -0.066 4.066 17 O -0.181 6.181 18 C -0.147 4.147 19 C 0.128 3.872 20 N -0.619 5.619 21 C -0.300 4.300 22 H 0.082 0.918 23 C -0.022 4.022 24 N -0.932 5.932 25 Si 1.059 2.941 26 H -0.295 1.295 27 H -0.282 1.282 28 H -0.296 1.296 29 C 0.103 3.897 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.403 0.597 34 H 0.201 0.799 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.040 0.960 43 H 0.262 0.738 44 H 0.045 0.955 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.934 -6.317 -18.816 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.355 5.355 5 C 0.391 3.609 6 O -0.393 6.393 7 C -0.156 4.156 8 C -0.090 4.090 9 N -0.205 5.205 10 C 0.055 3.945 11 C -0.028 4.028 12 C -0.103 4.103 13 C -0.139 4.139 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.086 4.086 17 O -0.067 6.067 18 C -0.167 4.167 19 C 0.001 3.999 20 N -0.347 5.347 21 C -0.427 4.427 22 H 0.100 0.900 23 C -0.222 4.222 24 N -0.574 5.574 25 Si 0.891 3.109 26 H -0.223 1.223 27 H -0.209 1.209 28 H -0.224 1.224 29 C -0.022 4.022 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.237 0.763 34 H 0.218 0.782 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.147 -6.971 -19.608 27.611 hybrid contribution 0.366 0.952 1.293 1.647 sum 18.513 -6.019 -18.315 26.728 Atomic orbital electron populations 1.22187 0.92632 1.03408 1.02328 1.20762 0.95838 0.95760 0.80836 0.89375 1.46128 1.65474 1.14276 1.09650 1.16270 0.78150 0.85716 0.80802 1.90908 1.50827 1.13965 1.83608 1.23460 1.10973 0.81741 0.99381 1.23595 0.97195 1.00518 0.87719 1.70588 1.18436 0.98481 1.33004 1.24030 0.97210 0.95214 0.78095 1.17335 1.04179 0.86923 0.94386 1.21353 0.97203 0.91780 0.99980 1.21132 0.99448 0.97447 0.95896 1.21438 0.97440 0.98921 0.93757 1.21145 1.00295 0.92302 1.00433 1.21234 0.95434 0.98647 0.93242 1.84540 1.62777 1.27739 1.31692 1.23244 0.98423 0.99808 0.95195 1.22313 0.88554 0.96398 0.92603 1.46324 1.05076 1.20662 1.62679 1.20066 0.83047 1.00445 1.39110 0.90041 1.25689 0.94223 1.02235 1.00014 1.70892 1.10922 1.27342 1.48227 0.83825 0.74687 0.76431 0.75976 1.22255 1.20865 1.22380 1.22773 0.92026 0.92954 0.94488 0.92067 0.88609 0.94435 0.76305 0.78208 0.84779 0.84926 0.85313 0.84933 0.84231 0.90325 0.93331 0.94287 0.92794 0.93735 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.06 37.16 0.30 -2.58 16 2 C 0.17 2.76 2.76 -67.92 -0.19 2.58 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.71 -10.10 5.07 -55.14 -0.28 -10.38 16 5 C 0.61 9.10 7.75 -12.90 -0.10 9.00 16 6 O -0.52 -9.06 16.55 5.18 0.09 -8.97 16 7 C -0.10 -1.34 7.18 -36.83 -0.26 -1.60 16 8 C 0.05 0.68 11.64 -17.51 -0.20 0.47 16 9 N -0.48 -5.97 10.86 -11.44 -0.12 -6.09 16 10 C 0.26 3.04 7.88 -13.77 -0.11 2.93 16 11 C -0.03 -0.26 5.87 -104.98 -0.62 -0.88 16 12 C -0.08 -0.69 9.72 -39.16 -0.38 -1.07 16 13 C -0.12 -0.78 10.03 -39.64 -0.40 -1.17 16 14 C -0.10 -0.55 10.04 -39.48 -0.40 -0.94 16 15 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 16 C -0.07 -0.54 9.69 -39.17 -0.38 -0.92 16 17 O -0.18 -2.25 10.30 2.80 0.03 -2.22 16 18 C -0.15 -2.33 4.25 -89.97 -0.38 -2.71 16 19 C 0.13 2.35 7.86 -8.50 -0.07 2.28 16 20 N -0.62 -14.10 2.02 -184.60 -0.37 -14.47 16 21 C -0.30 -8.18 9.87 -15.06 -0.15 -8.33 16 22 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 23 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 24 N -0.93 -28.82 13.70 55.49 0.76 -28.06 16 25 Si 1.06 25.90 25.51 -169.99 -4.34 21.56 16 26 H -0.29 -6.91 6.97 56.52 0.39 -6.52 16 27 H -0.28 -6.36 5.66 56.52 0.32 -6.04 16 28 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 29 C 0.10 2.01 4.60 -8.37 -0.04 1.97 16 30 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 31 H 0.10 2.10 5.93 -51.93 -0.31 1.80 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.40 5.02 8.39 -40.82 -0.34 4.68 16 34 H 0.20 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.13 1.01 7.89 -52.49 -0.41 0.60 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.14 1.08 7.83 -52.48 -0.41 0.67 16 40 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 41 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 8.02 8.73 -40.82 -0.36 7.67 16 44 H 0.05 0.86 7.02 -51.93 -0.36 0.49 16 45 H 0.05 1.07 4.82 -51.93 -0.25 0.82 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -32.94 373.79 -8.33 -41.27 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.86 Total: 4.59 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.86 Total: -2.85 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.02 Total: -59.00 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.11 Total: -11.19 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -4.34 Total: 21.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.94 -8.33 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969907918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.792 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds