Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21708 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.46575 * 120.00429 * 180.02562 * 5 4 2 8 8 C 1.36564 * 126.56680 * 180.02562 * 7 5 4 9 9 N 1.33314 * 107.65517 * 179.97438 * 8 7 5 10 10 C 1.31626 * 108.95691 * 359.97438 * 9 8 7 11 11 C 1.47705 * 125.54321 * 179.97438 * 10 9 8 12 12 C 1.39646 * 120.15188 * 179.74897 * 11 10 9 13 13 C 1.37941 * 119.84250 * 179.67866 * 12 11 10 14 14 C 1.38363 * 120.15422 * 0.61899 * 13 12 11 15 15 C 1.38375 * 120.30634 * 359.67860 * 14 13 12 16 16 C 1.37944 * 120.14790 * 359.97438 * 15 14 13 17 17 O 1.34211 * 108.91899 * 359.75378 * 10 9 8 18 18 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 19 19 C 1.53497 * 114.20384 * 299.99367 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 32 32 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 33 33 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 34 34 H 1.08006 * 126.17005 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.07160 * 359.97391 * 12 11 10 36 36 H 1.08006 * 119.91804 * 180.34130 * 13 12 11 37 37 H 1.07997 * 119.85015 * 179.69810 * 14 13 12 38 38 H 1.07996 * 119.92450 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.07473 * 180.02562 * 16 15 14 40 40 H 1.09008 * 113.41028 * 166.80073 * 18 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 43 43 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8581 1.1627 -2.4117 7 6 2.6350 -0.7094 -3.5541 8 6 2.8165 -0.1625 -4.7922 9 7 3.2721 -1.1236 -5.5959 10 6 3.3806 -2.2405 -4.9081 11 6 3.8512 -3.5351 -5.4414 12 6 3.9271 -4.6518 -4.6064 13 6 4.3612 -5.8593 -5.1127 14 6 4.7330 -5.9624 -6.4414 15 6 4.6661 -4.8584 -7.2730 16 6 4.2271 -3.6465 -6.7816 17 8 2.9988 -2.0108 -3.6421 18 6 2.0400 -0.7214 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 0.3745 -0.9091 2.4946 21 6 -0.9129 -0.8126 2.9512 22 1 -1.2551 0.1019 3.4126 23 6 -1.7781 -1.8901 2.8209 24 7 -3.0736 -1.7165 2.9761 25 14 -1.1040 -3.5868 2.4255 26 1 -1.0532 -3.7683 0.9525 27 1 0.2639 -3.7194 2.9881 28 1 -1.9868 -4.6215 3.0217 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1526 34 1 2.6253 0.8636 -5.0700 35 1 3.6421 -4.5713 -3.5678 36 1 4.4151 -6.7251 -4.4693 37 1 5.0767 -6.9090 -6.8315 38 1 4.9575 -4.9460 -8.3092 39 1 4.1750 -2.7857 -7.4317 40 1 3.1026 -0.9610 1.2076 41 1 1.3946 0.9849 2.4938 42 1 2.2319 -0.3356 3.4158 43 1 -3.4174 -0.8529 3.2536 44 1 1.6789 -2.6124 2.3358 45 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969907918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 63.365712 kcal Electronic energy + Delta-G solvation = -28774.096198 eV Core-core repulsion = 24759.931597 eV Total energy + Delta-G solvation = -4014.164601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56381 -41.43711 -40.18542 -39.91726 -36.46577 -35.89954 -34.48573 -33.51702 -31.95883 -31.83365 -30.19005 -29.74223 -26.94937 -26.21455 -25.29111 -24.53752 -23.40128 -22.70874 -22.37109 -21.71393 -20.77574 -19.67187 -19.15573 -18.45856 -18.10882 -17.41261 -17.09524 -16.95368 -16.64042 -16.30719 -15.94488 -15.76829 -15.57355 -15.29934 -15.17687 -14.76019 -14.63610 -14.38318 -14.09863 -13.90455 -13.51150 -13.41466 -13.07687 -12.96193 -12.73700 -12.58365 -12.44400 -12.25881 -12.22021 -11.96790 -11.88866 -11.85677 -11.52416 -11.34725 -10.95707 -10.92244 -10.72561 -10.31172 -9.97333 -9.41533 -9.11320 -8.54313 -5.37857 -0.78969 0.27038 0.40356 1.06689 1.39003 1.40860 1.51181 1.65429 1.87377 1.93902 2.57539 2.67869 2.80956 3.10183 3.22938 3.46263 3.57706 3.68988 3.74871 3.96091 3.99230 4.12405 4.19378 4.25601 4.32161 4.40390 4.45708 4.48721 4.55626 4.65168 4.71571 4.78111 4.82696 4.87305 4.93252 4.97020 4.97380 5.07430 5.26326 5.29348 5.35786 5.41460 5.45129 5.51720 5.56663 5.91617 6.02489 6.16207 6.39357 6.76670 6.85813 7.41189 8.35794 8.97090 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002753 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.284404 B =10167.002352 C =11517.669767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 H 0.092 0.908 4 N -0.698 5.698 5 C 0.612 3.388 6 O -0.546 6.546 7 C -0.122 4.122 8 C 0.062 3.938 9 N -0.495 5.495 10 C 0.267 3.733 11 C -0.058 4.058 12 C -0.092 4.092 13 C -0.124 4.124 14 C -0.088 4.088 15 C -0.124 4.124 16 C -0.074 4.074 17 O -0.182 6.182 18 C -0.115 4.115 19 C 0.125 3.875 20 N -0.650 5.650 21 C -0.271 4.271 22 H 0.046 0.954 23 C -0.087 4.087 24 N -0.976 5.976 25 Si 1.097 2.903 26 H -0.282 1.282 27 H -0.246 1.246 28 H -0.310 1.310 29 C 0.096 3.904 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.414 0.586 34 H 0.215 0.785 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.244 0.756 44 H 0.065 0.935 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.803 -8.763 -20.548 31.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 H 0.110 0.890 4 N -0.348 5.348 5 C 0.398 3.602 6 O -0.426 6.426 7 C -0.177 4.177 8 C -0.083 4.083 9 N -0.224 5.224 10 C 0.066 3.934 11 C -0.059 4.059 12 C -0.111 4.111 13 C -0.142 4.142 14 C -0.106 4.106 15 C -0.141 4.141 16 C -0.093 4.093 17 O -0.069 6.069 18 C -0.135 4.135 19 C -0.001 4.001 20 N -0.379 5.379 21 C -0.399 4.399 22 H 0.064 0.936 23 C -0.278 4.278 24 N -0.622 5.622 25 Si 0.923 3.077 26 H -0.209 1.209 27 H -0.171 1.171 28 H -0.239 1.239 29 C -0.028 4.028 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.251 0.749 34 H 0.232 0.768 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.176 0.824 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.098 -9.410 -21.353 32.138 hybrid contribution -0.730 1.722 1.708 2.533 sum 21.369 -7.688 -19.645 30.027 Atomic orbital electron populations 1.21994 0.95541 1.01328 1.00510 1.20519 0.93243 0.96532 0.82063 0.88983 1.45916 1.65179 1.14753 1.08914 1.16345 0.77394 0.85346 0.81144 1.90890 1.52208 1.15320 1.84185 1.23059 1.13272 0.82374 0.99019 1.23915 0.95800 1.01151 0.87431 1.70639 1.19665 0.98851 1.33213 1.24647 0.95272 0.95859 0.77669 1.17551 1.06492 0.86458 0.95435 1.21508 0.97439 0.92120 1.00068 1.21462 0.98644 0.97372 0.96735 1.21866 0.95566 0.99926 0.93282 1.21483 0.99314 0.91525 1.01810 1.21365 0.95685 0.99623 0.92669 1.84519 1.63090 1.27230 1.32063 1.23035 1.00268 0.96928 0.93257 1.22562 0.86732 0.96036 0.94748 1.46337 1.05067 1.23201 1.63246 1.19815 0.85595 0.98491 1.36014 0.93628 1.26918 0.93878 1.05896 1.01133 1.71009 1.12652 1.26483 1.52063 0.83395 0.75602 0.72057 0.76657 1.20893 1.17053 1.23892 1.23016 0.91961 0.93824 0.94041 0.94139 0.91651 0.95038 0.74936 0.76837 0.84629 0.82709 0.82293 0.82399 0.84551 0.85562 0.93483 0.91834 0.94642 0.91777 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.06 71.98 0.58 -4.75 16 2 C 0.18 5.50 2.76 45.00 0.12 5.63 16 3 H 0.09 2.84 7.58 -2.39 -0.02 2.83 16 4 N -0.70 -18.59 5.07 -446.59 -2.27 -20.86 16 5 C 0.61 17.76 7.75 86.42 0.67 18.43 16 6 O -0.55 -18.96 16.55 -4.37 -0.07 -19.03 16 7 C -0.12 -3.16 7.18 24.05 0.17 -2.99 16 8 C 0.06 1.50 11.64 84.08 0.98 2.48 16 9 N -0.50 -12.09 10.86 -304.10 -3.30 -15.39 16 10 C 0.27 6.11 7.88 87.23 0.69 6.80 16 11 C -0.06 -1.05 5.87 -20.10 -0.12 -1.16 16 12 C -0.09 -1.33 9.72 22.54 0.22 -1.11 16 13 C -0.12 -1.19 10.03 22.23 0.22 -0.97 16 14 C -0.09 -0.65 10.04 22.33 0.22 -0.43 16 15 C -0.12 -1.12 10.03 22.23 0.22 -0.90 16 16 C -0.07 -1.08 9.69 22.54 0.22 -0.86 16 17 O -0.18 -4.33 10.30 -12.90 -0.13 -4.46 16 18 C -0.12 -3.24 4.25 -10.37 -0.04 -3.28 16 19 C 0.12 4.24 7.86 83.18 0.65 4.89 16 20 N -0.65 -28.92 2.02 -737.94 -1.49 -30.41 16 21 C -0.27 -15.15 9.87 84.03 0.83 -14.32 16 22 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 23 C -0.09 -5.10 5.50 84.86 0.47 -4.63 16 24 N -0.98 -63.23 13.70 21.65 0.30 -62.93 16 25 Si 1.10 52.11 25.51 68.60 1.75 53.86 16 26 H -0.28 -12.65 6.97 99.48 0.69 -11.96 16 27 H -0.25 -10.11 5.66 99.48 0.56 -9.54 16 28 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 29 C 0.10 3.43 4.60 83.26 0.38 3.81 16 30 H 0.04 1.73 6.31 -2.39 -0.02 1.72 16 31 H 0.06 2.95 5.93 -2.38 -0.01 2.94 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.41 9.22 8.39 -92.71 -0.78 8.44 16 34 H 0.21 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.14 1.81 7.89 -2.91 -0.02 1.79 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 38 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.14 1.98 7.83 -2.91 -0.02 1.96 16 40 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.24 15.99 8.73 -92.71 -0.81 15.18 16 44 H 0.06 2.12 7.02 -2.38 -0.02 2.11 16 45 H 0.05 1.71 4.82 -2.39 -0.01 1.69 16 Total: -1.00 -75.61 373.79 1.33 -74.28 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.06 Total: 18.32 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 6.49 Total: 6.63 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -6.76 Total: -129.59 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.21 Total: -23.50 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 1.75 Total: 53.86 kcal Total: -75.61 1.33 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969907918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.646 kcal (2) G-P(sol) polarization free energy of solvation -75.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds