Wall clock time and date at job start Sat Apr 11 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21517 * 119.99827 * 0.02562 * 5 4 2 7 7 C 1.48148 * 120.00086 * 179.97438 * 5 4 2 8 8 C 1.40026 * 120.86499 * 0.02562 * 7 5 4 9 9 C 1.38143 * 119.26894 * 180.02562 * 8 7 5 10 10 N 1.31714 * 121.06640 * 0.02562 * 9 8 7 11 11 C 1.32820 * 121.89983 * 359.97438 * 10 9 8 12 12 C 1.47655 * 119.70008 * 179.97438 * 11 10 9 13 13 C 1.36031 * 125.93611 * 0.02562 * 12 11 10 14 14 C 1.40831 * 106.74034 * 180.02562 * 13 12 11 15 15 C 1.34804 * 107.04145 * 359.97438 * 14 13 12 16 16 O 1.34235 * 108.68512 * 359.73973 * 15 14 13 17 17 C 1.39472 * 120.86281 * 179.72642 * 7 5 4 18 18 C 1.53004 * 109.47000 * 240.00171 * 2 1 3 19 19 C 1.53495 * 114.20450 * 175.68542 * 18 2 1 20 20 N 1.47073 * 87.98125 * 220.34126 * 19 18 2 21 21 C 1.36933 * 136.05439 * 207.08066 * 20 19 18 22 22 H 1.07997 * 120.00623 * 7.51587 * 21 20 19 23 23 C 1.38811 * 119.99801 * 187.50516 * 21 20 19 24 24 N 1.31620 * 120.00313 * 174.40470 * 23 21 20 25 25 Si 1.86807 * 120.00107 * 354.40682 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95313 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.95489 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.95521 * 25 23 21 29 29 C 1.47068 * 87.88530 * 27.34170 * 20 19 18 30 30 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 31 31 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 32 32 H 1.08999 * 109.47223 * 304.63944 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.07999 * 120.36341 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.46832 * 180.02562 * 9 8 7 36 36 H 1.08003 * 126.63127 * 359.96701 * 13 12 11 37 37 H 1.07997 * 126.47964 * 180.02562 * 14 13 12 38 38 H 1.07999 * 125.66195 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.55812 * 359.97322 * 17 7 5 40 40 H 1.09008 * 113.40877 * 308.87658 * 18 2 1 41 41 H 1.08997 * 113.47243 * 105.56534 * 19 18 2 42 42 H 1.09003 * 113.52126 * 335.12310 * 19 18 2 43 43 H 0.97005 * 119.99470 * 355.01014 * 24 23 21 44 44 H 1.08994 * 113.47031 * 87.43931 * 29 20 19 45 45 H 1.08999 * 113.46704 * 217.87918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1607 2.4117 7 6 2.6404 -0.7167 3.5669 8 6 2.9786 -2.0749 3.5245 9 6 3.4347 -2.6934 4.6725 10 7 3.5551 -2.0266 5.8019 11 6 3.2472 -0.7377 5.8923 12 6 3.4002 -0.0378 7.1833 13 6 3.8425 -0.5918 8.3443 14 6 3.8286 0.4306 9.3128 15 6 3.3839 1.5471 8.7022 16 8 3.1319 1.2620 7.4149 17 6 2.7860 -0.0371 4.7761 18 6 2.0400 -0.7212 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7331 -4.0012 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5118 30 1 -0.3633 0.4403 -0.9286 31 1 -0.3633 -1.0243 0.0831 32 1 -0.3633 0.5841 0.8455 33 1 2.2491 -1.6318 1.1526 34 1 2.8830 -2.6328 2.6048 35 1 3.6968 -3.7407 4.6433 36 1 4.1449 -1.6177 8.4946 37 1 4.1201 0.3378 10.3485 38 1 3.2562 2.5122 9.1699 39 1 2.5409 1.0122 4.8492 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2745 -0.0729 -3.2204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969921994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:20 Heat of formation + Delta-G solvation = 57.793881 kcal Electronic energy + Delta-G solvation = -28178.197930 eV Core-core repulsion = 24163.791717 eV Total energy + Delta-G solvation = -4014.406214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.56429 -41.76874 -40.76859 -39.79659 -36.44226 -34.70511 -34.37788 -33.75848 -33.27110 -31.79104 -29.66467 -29.56174 -27.04183 -26.25549 -25.27789 -24.77737 -23.10871 -22.31440 -22.17962 -21.45473 -21.03211 -19.58878 -19.50957 -18.22022 -17.85843 -17.23272 -17.16377 -16.88627 -16.65166 -16.52468 -16.20712 -15.82996 -15.57328 -15.15267 -15.07617 -14.98731 -14.83968 -14.45579 -13.87703 -13.85224 -13.68973 -13.44642 -13.37631 -13.13815 -13.08059 -12.94375 -12.62801 -12.36543 -12.04262 -11.70309 -11.50972 -11.27642 -11.25804 -11.09437 -11.02884 -10.87197 -10.69750 -10.67697 -10.19295 -9.23949 -9.12753 -8.62390 -5.48943 -0.64550 -0.30018 0.88635 1.38484 1.49280 1.59636 1.67323 1.70491 1.84420 1.88613 2.54490 2.76489 2.96449 3.18104 3.25625 3.33485 3.53763 3.59678 3.78604 3.83038 3.85276 4.06540 4.11232 4.17093 4.24402 4.27868 4.45929 4.55505 4.57674 4.62859 4.64998 4.73390 4.77488 4.79549 4.83919 4.89657 4.97613 5.02162 5.08059 5.18706 5.28884 5.36244 5.42707 5.47457 5.52853 5.94127 6.04039 6.40610 6.68635 6.69141 7.04952 7.31577 8.26129 8.88997 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002038 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.836918 B =13732.636105 C =14055.601153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.070 0.930 4 N -0.695 5.695 5 C 0.559 3.441 6 O -0.570 6.570 7 C -0.089 4.089 8 C -0.125 4.125 9 C 0.114 3.886 10 N -0.469 5.469 11 C 0.186 3.814 12 C -0.020 4.020 13 C -0.152 4.152 14 C -0.227 4.227 15 C -0.017 4.017 16 O -0.188 6.188 17 C -0.116 4.116 18 C -0.103 4.103 19 C 0.126 3.874 20 N -0.661 5.661 21 C -0.291 4.291 22 H 0.051 0.949 23 C -0.088 4.088 24 N -0.971 5.971 25 Si 1.106 2.894 26 H -0.306 1.306 27 H -0.262 1.262 28 H -0.264 1.264 29 C 0.096 3.904 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.417 0.583 34 H 0.181 0.819 35 H 0.210 0.790 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.246 0.754 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.246 0.754 44 H 0.048 0.952 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -3.985 32.928 33.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.088 0.912 4 N -0.347 5.347 5 C 0.346 3.654 6 O -0.449 6.449 7 C -0.100 4.100 8 C -0.145 4.145 9 C -0.044 4.044 10 N -0.180 5.180 11 C 0.052 3.948 12 C -0.070 4.070 13 C -0.173 4.173 14 C -0.246 4.246 15 C -0.085 4.085 16 O -0.084 6.084 17 C -0.137 4.137 18 C -0.122 4.122 19 C 0.000 4.000 20 N -0.390 5.390 21 C -0.419 4.419 22 H 0.068 0.932 23 C -0.279 4.279 24 N -0.616 5.616 25 Si 0.932 3.068 26 H -0.235 1.235 27 H -0.188 1.188 28 H -0.190 1.190 29 C -0.029 4.029 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.255 0.745 34 H 0.198 0.802 35 H 0.227 0.773 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.262 0.738 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.868 -2.733 32.198 33.258 hybrid contribution 1.741 -0.452 -0.088 1.801 sum -6.127 -3.185 32.110 32.844 Atomic orbital electron populations 1.22105 0.93272 1.03467 1.02600 1.20850 0.95271 0.96208 0.82215 0.91154 1.45768 1.65758 1.14812 1.08333 1.18341 0.77448 0.86047 0.83604 1.90779 1.51561 1.17155 1.85414 1.20258 1.00910 0.95508 0.93308 1.22835 0.96575 0.92775 1.02301 1.23406 0.93532 1.01661 0.85794 1.67389 1.14355 1.06569 1.29726 1.18271 0.97333 0.89919 0.89323 1.19861 1.09760 0.82615 0.94759 1.22161 1.01873 1.01885 0.91342 1.22224 1.07492 0.92447 1.02444 1.25141 1.01077 1.02518 0.79784 1.84052 1.67999 1.25918 1.30434 1.22172 0.97933 1.01614 0.91994 1.23294 0.95992 1.00557 0.92397 1.22509 0.95106 0.99040 0.83308 1.46103 1.21008 1.69920 1.01949 1.20022 1.07283 1.28907 0.85667 0.93155 1.27106 1.08671 1.01040 0.91093 1.71026 1.11988 1.48837 1.29742 0.83315 0.72306 0.76454 0.74736 1.23465 1.18777 1.18977 1.22955 0.88565 0.96454 0.94889 0.90735 0.90217 0.92987 0.74482 0.80208 0.77315 0.81922 0.80250 0.73810 0.84715 0.85762 0.92403 0.94658 0.94545 0.93410 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.48 71.98 0.68 -2.49 16 2 C 0.16 3.79 2.35 44.99 0.11 3.89 16 3 H 0.07 2.05 7.41 -2.39 -0.02 2.03 16 4 N -0.70 -13.50 4.90 -445.11 -2.18 -15.68 16 5 C 0.56 13.52 7.76 86.88 0.67 14.19 16 6 O -0.57 -18.60 16.10 -3.77 -0.06 -18.66 16 7 C -0.09 -1.79 5.90 -19.91 -0.12 -1.91 16 8 C -0.12 -1.54 9.61 22.68 0.22 -1.33 16 9 C 0.11 1.40 11.16 84.69 0.95 2.35 16 10 N -0.47 -8.83 10.02 -185.28 -1.86 -10.69 16 11 C 0.19 4.11 6.75 41.82 0.28 4.40 16 12 C -0.02 -0.44 7.03 24.25 0.17 -0.27 16 13 C -0.15 -2.71 10.58 22.39 0.24 -2.47 16 14 C -0.23 -2.94 10.89 22.12 0.24 -2.70 16 15 C -0.02 -0.22 12.08 67.03 0.81 0.59 16 16 O -0.19 -3.88 10.39 -5.97 -0.06 -3.94 16 17 C -0.12 -2.70 9.32 22.90 0.21 -2.49 16 18 C -0.10 -2.84 3.52 -10.37 -0.04 -2.87 16 19 C 0.13 4.40 8.12 83.18 0.68 5.08 16 20 N -0.66 -31.05 3.69 -737.87 -2.72 -33.77 16 21 C -0.29 -16.88 11.08 84.03 0.93 -15.95 16 22 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 23 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 24 N -0.97 -63.11 13.70 21.65 0.30 -62.82 16 25 Si 1.11 52.99 25.16 68.60 1.73 54.72 16 26 H -0.31 -15.18 7.11 99.48 0.71 -14.48 16 27 H -0.26 -11.14 6.51 99.48 0.65 -10.49 16 28 H -0.26 -11.56 6.21 99.48 0.62 -10.94 16 29 C 0.10 3.66 5.27 83.27 0.44 4.10 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.42 5.24 6.74 -92.71 -0.62 4.62 16 34 H 0.18 0.87 6.52 -2.91 -0.02 0.85 16 35 H 0.21 0.83 8.06 -2.91 -0.02 0.80 16 36 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.25 0.85 8.06 -2.91 -0.02 0.82 16 39 H 0.13 3.48 7.58 -2.91 -0.02 3.46 16 40 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.27 8.11 -2.39 -0.02 1.26 16 43 H 0.25 16.04 8.73 -92.70 -0.81 15.23 16 44 H 0.05 1.83 7.50 -2.39 -0.02 1.81 16 45 H 0.06 2.14 4.72 -2.39 -0.01 2.13 16 Total: -1.00 -83.20 378.49 2.29 -80.91 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.22 Total: 12.61 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.94 Total: -2.67 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -6.46 Total: -122.96 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.12 Total: -22.61 kcal Atomic # 14 Polarization: 52.99 SS G_CDS: 1.73 Total: 54.72 kcal Total: -83.20 2.29 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969921994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.703 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds