Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21588 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.47524 * 120.00456 * 180.02562 * 5 4 2 8 8 C 1.36624 * 126.83468 * 180.02562 * 7 5 4 9 9 C 1.42186 * 103.79327 * 179.97438 * 8 7 5 10 10 C 1.48452 * 126.84048 * 179.97438 * 9 8 7 11 11 C 1.39316 * 120.12024 * 359.72187 * 10 9 8 12 12 C 1.38023 * 119.87906 * 179.74305 * 11 10 9 13 13 C 1.38323 * 120.12301 * 0.53668 * 12 11 10 14 14 C 1.38322 * 120.23408 * 359.73788 * 13 12 11 15 15 C 1.38021 * 120.12081 * 359.97438 * 14 13 12 16 16 N 1.30925 * 106.31745 * 359.97438 * 9 8 7 17 17 O 1.20871 * 111.80437 * 359.72393 * 16 9 8 18 18 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 19 19 C 1.53497 * 114.20384 * 299.99367 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 32 32 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 33 33 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 34 34 H 1.08000 * 128.09855 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.05926 * 0.02562 * 11 10 9 36 36 H 1.08003 * 119.94075 * 180.27212 * 12 11 10 37 37 H 1.07988 * 119.88396 * 179.71814 * 13 12 11 38 38 H 1.07996 * 119.93714 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.06017 * 180.02562 * 15 14 13 40 40 H 1.09008 * 113.41028 * 166.80073 * 18 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 43 43 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8575 1.1613 -2.4118 7 6 2.6382 -0.7139 -3.5618 8 6 2.8217 -0.1724 -4.8026 9 6 3.3033 -1.2613 -5.5799 10 6 3.6698 -1.2348 -7.0182 11 6 3.5499 -0.0545 -7.7486 12 6 3.8971 -0.0342 -9.0843 13 6 4.3529 -1.1855 -9.7007 14 6 4.4685 -2.3615 -8.9816 15 6 4.1297 -2.3915 -7.6439 16 7 3.3591 -2.2919 -4.7744 17 8 3.0012 -2.0071 -3.6555 18 6 2.0400 -0.7214 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 0.3745 -0.9091 2.4946 21 6 -0.9129 -0.8126 2.9512 22 1 -1.2551 0.1019 3.4126 23 6 -1.7781 -1.8901 2.8209 24 7 -3.0736 -1.7165 2.9761 25 14 -1.1040 -3.5868 2.4255 26 1 -1.0532 -3.7683 0.9525 27 1 0.2639 -3.7194 2.9881 28 1 -1.9868 -4.6215 3.0217 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1526 34 1 2.6436 0.8448 -5.1188 35 1 3.1902 0.8441 -7.2694 36 1 3.8087 0.8814 -9.6504 37 1 4.6192 -1.1664 -10.7470 38 1 4.8253 -3.2575 -9.4675 39 1 4.2207 -3.3101 -7.0833 40 1 3.1026 -0.9610 1.2076 41 1 1.3946 0.9849 2.4938 42 1 2.2319 -0.3356 3.4158 43 1 -3.4174 -0.8529 3.2536 44 1 1.6789 -2.6124 2.3358 45 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970040581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 122.946357 kcal Electronic energy + Delta-G solvation = -28474.712667 eV Core-core repulsion = 24463.131677 eV Total energy + Delta-G solvation = -4011.580990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.25066 -40.13607 -39.52653 -38.79267 -35.11228 -34.59526 -32.63415 -32.31248 -31.37838 -30.78491 -29.84644 -28.00255 -25.39356 -24.99517 -24.53496 -23.74982 -22.71707 -22.28359 -21.04503 -20.25209 -19.41088 -18.39080 -18.03367 -17.43014 -17.02377 -16.51936 -16.14570 -15.75154 -15.32814 -15.22935 -14.86233 -14.76313 -14.19333 -14.05273 -13.80168 -13.73249 -13.65963 -13.45612 -13.27958 -12.62636 -12.13411 -11.93720 -11.80825 -11.74579 -11.45140 -11.36206 -11.23207 -11.22325 -10.78412 -10.59505 -10.42270 -10.35213 -10.05379 -10.03519 -9.46366 -9.41162 -9.18899 -9.02679 -8.96066 -8.65535 -7.14464 -6.29888 -3.22596 0.36232 0.67298 0.94515 2.02985 2.38492 2.88659 3.07436 3.38877 3.43026 3.46087 3.52448 3.60518 4.05786 4.50644 4.54378 4.57914 4.62687 4.65774 4.75351 4.79293 4.89362 4.95628 5.01564 5.11011 5.16746 5.37473 5.42032 5.53912 5.57488 5.61275 5.78436 5.98357 5.98728 6.03579 6.04534 6.09333 6.20717 6.28180 6.33363 6.35942 6.46613 6.50219 6.73381 6.85601 7.11623 7.25563 7.32011 7.75332 7.95843 8.24012 8.97089 9.50513 10.37065 11.19543 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.002182 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.705527 B =12831.514088 C =13289.376080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.171 3.829 3 H 0.089 0.911 4 N -0.703 5.703 5 C 0.603 3.397 6 O -0.513 6.513 7 C -0.071 4.071 8 C -0.146 4.146 9 C 0.050 3.950 10 C -0.022 4.022 11 C -0.093 4.093 12 C -0.119 4.119 13 C -0.109 4.109 14 C -0.120 4.120 15 C -0.091 4.091 16 N -0.337 5.337 17 O 0.125 5.875 18 C -0.147 4.147 19 C 0.128 3.872 20 N -0.619 5.619 21 C -0.300 4.300 22 H 0.081 0.919 23 C -0.022 4.022 24 N -0.932 5.932 25 Si 1.059 2.941 26 H -0.294 1.294 27 H -0.282 1.282 28 H -0.297 1.297 29 C 0.103 3.897 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.037 0.963 33 H 0.406 0.594 34 H 0.185 0.815 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.831 1.544 -22.324 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.068 3.932 3 H 0.107 0.893 4 N -0.352 5.352 5 C 0.385 3.615 6 O -0.388 6.388 7 C -0.137 4.137 8 C -0.168 4.168 9 C -0.105 4.105 10 C -0.023 4.023 11 C -0.113 4.113 12 C -0.137 4.137 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.110 4.110 16 N -0.035 5.035 17 O 0.050 5.950 18 C -0.167 4.167 19 C 0.001 3.999 20 N -0.347 5.347 21 C -0.427 4.427 22 H 0.099 0.901 23 C -0.222 4.222 24 N -0.574 5.574 25 Si 0.891 3.109 26 H -0.222 1.222 27 H -0.208 1.208 28 H -0.224 1.224 29 C -0.023 4.023 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.240 0.760 34 H 0.202 0.798 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.259 -0.407 -22.685 28.507 hybrid contribution 0.403 1.682 0.424 1.781 sum 17.661 1.276 -22.260 28.444 Atomic orbital electron populations 1.22197 0.92572 1.03528 1.02343 1.20783 0.95873 0.95756 0.80762 0.89330 1.46133 1.65113 1.14472 1.09511 1.16480 0.78370 0.85741 0.80877 1.90880 1.50272 1.14145 1.83549 1.24329 1.06028 0.85124 0.98203 1.22850 1.01518 1.01639 0.90798 1.21960 1.03254 0.89597 0.95707 1.17674 1.01775 0.94934 0.87889 1.21175 0.98776 0.96988 0.94332 1.21110 0.99384 0.98751 0.94449 1.21320 0.98487 0.92844 1.00135 1.21133 1.00233 0.98512 0.93928 1.21252 0.97208 0.97599 0.94975 1.73993 1.15594 1.22987 0.90955 1.84964 1.59817 1.25449 1.24796 1.23244 0.98526 0.99813 0.95110 1.22314 0.88582 0.96374 0.92617 1.46327 1.05047 1.20671 1.62688 1.20058 0.83058 1.00418 1.39139 0.90084 1.25698 0.94222 1.02257 1.00005 1.70896 1.10937 1.27311 1.48222 0.83825 0.74695 0.76364 0.76059 1.22150 1.20838 1.22440 1.22784 0.92022 0.92948 0.94541 0.91932 0.88572 0.94444 0.75966 0.79754 0.85227 0.85274 0.85621 0.85424 0.85259 0.90180 0.93366 0.94287 0.92829 0.93672 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.06 37.16 0.30 -2.51 16 2 C 0.17 2.65 2.76 -67.92 -0.19 2.46 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 N -0.70 -9.38 5.07 -54.85 -0.28 -9.66 16 5 C 0.60 8.39 7.78 -12.48 -0.10 8.30 16 6 O -0.51 -8.53 16.57 5.29 0.09 -8.44 16 7 C -0.07 -0.87 7.28 -36.38 -0.26 -1.13 16 8 C -0.15 -1.60 10.30 -38.65 -0.40 -2.00 16 9 C 0.05 0.57 7.05 -82.53 -0.58 -0.01 16 10 C -0.02 -0.21 5.88 -104.88 -0.62 -0.83 16 11 C -0.09 -0.74 9.60 -39.26 -0.38 -1.12 16 12 C -0.12 -0.77 10.03 -39.63 -0.40 -1.17 16 13 C -0.11 -0.68 10.04 -39.52 -0.40 -1.08 16 14 C -0.12 -0.85 10.03 -39.63 -0.40 -1.24 16 15 C -0.09 -0.82 9.70 -39.26 -0.38 -1.20 16 16 N -0.34 -4.20 11.78 33.39 0.39 -3.80 16 17 O 0.13 1.52 11.02 15.54 0.17 1.69 16 18 C -0.15 -2.26 4.25 -89.97 -0.38 -2.64 16 19 C 0.13 2.30 7.86 -8.50 -0.07 2.23 16 20 N -0.62 -13.89 2.02 -184.60 -0.37 -14.27 16 21 C -0.30 -8.11 9.87 -15.06 -0.15 -8.26 16 22 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 23 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 24 N -0.93 -28.68 13.70 55.49 0.76 -27.92 16 25 Si 1.06 25.81 25.51 -169.99 -4.34 21.48 16 26 H -0.29 -6.86 6.97 56.52 0.39 -6.46 16 27 H -0.28 -6.34 5.66 56.52 0.32 -6.02 16 28 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 29 C 0.10 1.96 4.60 -8.37 -0.04 1.92 16 30 H 0.06 1.30 6.31 -51.93 -0.33 0.97 16 31 H 0.10 2.06 5.93 -51.93 -0.31 1.76 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 4.61 8.42 -40.82 -0.34 4.27 16 34 H 0.19 1.64 7.57 -52.49 -0.40 1.24 16 35 H 0.13 0.82 7.22 -52.49 -0.38 0.44 16 36 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 1.15 7.89 -52.49 -0.41 0.74 16 40 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 44 H 0.05 0.86 7.02 -51.93 -0.36 0.49 16 45 H 0.05 1.07 4.82 -51.93 -0.25 0.82 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -32.42 372.27 -8.29 -40.71 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.80 Total: 3.62 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -4.53 Total: -9.02 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.50 Total: -55.65 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.26 Total: -6.75 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.34 Total: 21.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.42 -8.29 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970040581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.660 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds