Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21588 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.47524 * 120.00456 * 180.02562 * 5 4 2 8 8 C 1.36624 * 126.83468 * 180.02562 * 7 5 4 9 9 C 1.42186 * 103.79327 * 179.97438 * 8 7 5 10 10 C 1.48452 * 126.84048 * 179.97438 * 9 8 7 11 11 C 1.39316 * 120.12024 * 359.72187 * 10 9 8 12 12 C 1.38023 * 119.87906 * 179.74305 * 11 10 9 13 13 C 1.38323 * 120.12301 * 0.53668 * 12 11 10 14 14 C 1.38322 * 120.23408 * 359.73788 * 13 12 11 15 15 C 1.38021 * 120.12081 * 359.97438 * 14 13 12 16 16 N 1.30925 * 106.31745 * 359.97438 * 9 8 7 17 17 O 1.20871 * 111.80437 * 359.72393 * 16 9 8 18 18 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 19 19 C 1.53497 * 114.20384 * 299.99367 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 32 32 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 33 33 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 34 34 H 1.08000 * 128.09855 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.05926 * 0.02562 * 11 10 9 36 36 H 1.08003 * 119.94075 * 180.27212 * 12 11 10 37 37 H 1.07988 * 119.88396 * 179.71814 * 13 12 11 38 38 H 1.07996 * 119.93714 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.06017 * 180.02562 * 15 14 13 40 40 H 1.09008 * 113.41028 * 166.80073 * 18 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 43 43 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8575 1.1613 -2.4118 7 6 2.6382 -0.7139 -3.5618 8 6 2.8217 -0.1724 -4.8026 9 6 3.3033 -1.2613 -5.5799 10 6 3.6698 -1.2348 -7.0182 11 6 3.5499 -0.0545 -7.7486 12 6 3.8971 -0.0342 -9.0843 13 6 4.3529 -1.1855 -9.7007 14 6 4.4685 -2.3615 -8.9816 15 6 4.1297 -2.3915 -7.6439 16 7 3.3591 -2.2919 -4.7744 17 8 3.0012 -2.0071 -3.6555 18 6 2.0400 -0.7214 1.2493 19 6 1.5899 -0.0846 2.5714 20 7 0.3745 -0.9091 2.4946 21 6 -0.9129 -0.8126 2.9512 22 1 -1.2551 0.1019 3.4126 23 6 -1.7781 -1.8901 2.8209 24 7 -3.0736 -1.7165 2.9761 25 14 -1.1040 -3.5868 2.4255 26 1 -1.0532 -3.7683 0.9525 27 1 0.2639 -3.7194 2.9881 28 1 -1.9868 -4.6215 3.0217 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1526 34 1 2.6436 0.8448 -5.1188 35 1 3.1902 0.8441 -7.2694 36 1 3.8087 0.8814 -9.6504 37 1 4.6192 -1.1664 -10.7470 38 1 4.8253 -3.2575 -9.4675 39 1 4.2207 -3.3101 -7.0833 40 1 3.1026 -0.9610 1.2076 41 1 1.3946 0.9849 2.4938 42 1 2.2319 -0.3356 3.4158 43 1 -3.4174 -0.8529 3.2536 44 1 1.6789 -2.6124 2.3358 45 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970040581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 102.745975 kcal Electronic energy + Delta-G solvation = -28475.588621 eV Core-core repulsion = 24463.131677 eV Total energy + Delta-G solvation = -4012.456945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.14219 -41.44237 -40.16052 -40.07587 -36.26278 -35.55597 -34.47347 -33.47523 -31.94621 -31.53925 -31.11650 -29.77916 -26.90541 -26.24148 -25.31036 -25.01298 -23.69051 -22.94458 -22.54815 -21.24659 -20.66350 -19.73597 -19.15241 -18.94887 -17.62439 -17.43146 -17.39338 -16.92088 -16.70611 -16.19693 -16.02510 -15.76086 -15.61784 -15.24787 -15.13861 -14.85413 -14.45796 -14.30567 -14.06777 -14.02080 -13.48558 -13.37792 -13.07823 -12.92913 -12.88955 -12.55326 -12.32284 -12.17589 -11.97800 -11.96896 -11.86004 -11.81885 -11.55805 -11.31997 -11.00116 -10.91882 -10.69548 -10.25175 -9.94851 -9.59794 -9.07905 -8.51329 -5.34823 -0.44427 -0.12106 0.41075 1.27696 1.38991 1.42249 1.53815 1.67658 1.82580 2.04375 2.59805 2.75651 2.86173 3.13291 3.20904 3.25750 3.54915 3.72060 3.80272 3.85250 4.02630 4.04665 4.06629 4.23763 4.29178 4.44458 4.48635 4.53849 4.59411 4.68070 4.69914 4.76486 4.82351 4.91709 4.93340 4.97536 5.01905 5.06914 5.29969 5.32681 5.45001 5.46055 5.46832 5.53209 5.62177 5.96231 6.05322 6.23259 6.79394 6.82970 6.91831 7.44094 8.39071 8.99912 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.002182 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.705527 B =12831.514088 C =13289.376080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 H 0.095 0.905 4 N -0.694 5.694 5 C 0.610 3.390 6 O -0.542 6.542 7 C -0.081 4.081 8 C -0.137 4.137 9 C 0.052 3.948 10 C -0.050 4.050 11 C -0.099 4.099 12 C -0.121 4.121 13 C -0.106 4.106 14 C -0.125 4.125 15 C -0.108 4.108 16 N -0.354 5.354 17 O 0.123 5.877 18 C -0.115 4.115 19 C 0.124 3.876 20 N -0.649 5.649 21 C -0.269 4.269 22 H 0.046 0.954 23 C -0.087 4.087 24 N -0.976 5.976 25 Si 1.096 2.904 26 H -0.281 1.281 27 H -0.247 1.247 28 H -0.313 1.313 29 C 0.094 3.906 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.418 0.582 34 H 0.204 0.796 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.244 0.756 44 H 0.063 0.937 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.377 1.272 -24.808 32.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.077 3.923 3 H 0.113 0.887 4 N -0.345 5.345 5 C 0.394 3.606 6 O -0.419 6.419 7 C -0.147 4.147 8 C -0.159 4.159 9 C -0.103 4.103 10 C -0.051 4.051 11 C -0.119 4.119 12 C -0.139 4.139 13 C -0.124 4.124 14 C -0.143 4.143 15 C -0.127 4.127 16 N -0.054 5.054 17 O 0.049 5.951 18 C -0.134 4.134 19 C -0.001 4.001 20 N -0.378 5.378 21 C -0.397 4.397 22 H 0.064 0.936 23 C -0.279 4.279 24 N -0.623 5.623 25 Si 0.922 3.078 26 H -0.207 1.207 27 H -0.171 1.171 28 H -0.242 1.242 29 C -0.030 4.030 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.255 0.745 34 H 0.221 0.779 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.888 -0.676 -25.174 32.719 hybrid contribution -0.619 1.904 1.066 2.268 sum 20.269 1.228 -24.109 31.521 Atomic orbital electron populations 1.22010 0.95531 1.01442 1.00580 1.20532 0.93240 0.96598 0.81941 0.88723 1.45927 1.64745 1.15012 1.08779 1.16535 0.77580 0.85336 0.81163 1.90868 1.51542 1.15452 1.84081 1.24026 1.07246 0.85510 0.97913 1.23145 1.00216 1.02369 0.90204 1.22284 1.02377 0.89195 0.96456 1.17851 1.03717 0.96159 0.87373 1.21421 0.98622 0.96775 0.95057 1.21481 0.98387 0.99968 0.94016 1.21720 0.97015 0.92250 1.01414 1.21416 0.99775 0.99849 0.93218 1.21341 0.98104 0.97234 0.96022 1.73973 1.16488 1.23650 0.91274 1.84948 1.60114 1.25257 1.24816 1.23037 1.00374 0.96777 0.93228 1.22567 0.86708 0.96056 0.94809 1.46342 1.05023 1.23206 1.63226 1.19807 0.85617 0.98416 1.35891 0.93632 1.26890 0.93913 1.05840 1.01240 1.71010 1.12659 1.26452 1.52133 0.83398 0.75530 0.72064 0.76760 1.20739 1.17120 1.24160 1.23035 0.92024 0.93881 0.94110 0.94056 0.91712 0.94857 0.74508 0.77915 0.83980 0.82717 0.82854 0.83482 0.86107 0.85354 0.93417 0.91978 0.94666 0.91922 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.06 71.98 0.58 -4.62 16 2 C 0.18 5.19 2.76 45.00 0.12 5.32 16 3 H 0.09 2.72 7.58 -2.39 -0.02 2.71 16 4 N -0.69 -16.89 5.07 -445.71 -2.26 -19.15 16 5 C 0.61 15.98 7.78 86.69 0.67 16.65 16 6 O -0.54 -17.32 16.57 -3.99 -0.07 -17.39 16 7 C -0.08 -1.87 7.28 24.34 0.18 -1.69 16 8 C -0.14 -2.82 10.30 22.87 0.24 -2.58 16 9 C 0.05 1.13 7.05 42.98 0.30 1.43 16 10 C -0.05 -0.93 5.88 -20.03 -0.12 -1.04 16 11 C -0.10 -1.37 9.60 22.48 0.22 -1.16 16 12 C -0.12 -1.22 10.03 22.24 0.22 -0.99 16 13 C -0.11 -0.99 10.04 22.31 0.22 -0.77 16 14 C -0.12 -1.50 10.03 22.24 0.22 -1.28 16 15 C -0.11 -1.84 9.70 22.48 0.22 -1.62 16 16 N -0.35 -8.57 11.78 -48.93 -0.58 -9.15 16 17 O 0.12 2.85 11.02 65.78 0.72 3.58 16 18 C -0.11 -3.09 4.25 -10.37 -0.04 -3.13 16 19 C 0.12 4.11 7.86 83.18 0.65 4.77 16 20 N -0.65 -28.45 2.02 -737.94 -1.49 -29.94 16 21 C -0.27 -14.91 9.87 84.03 0.83 -14.08 16 22 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 23 C -0.09 -5.11 5.50 84.86 0.47 -4.64 16 24 N -0.98 -63.02 13.70 21.65 0.30 -62.72 16 25 Si 1.10 52.16 25.51 68.60 1.75 53.91 16 26 H -0.28 -12.58 6.97 99.48 0.69 -11.89 16 27 H -0.25 -10.18 5.66 99.48 0.56 -9.62 16 28 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 29 C 0.09 3.30 4.60 83.26 0.38 3.68 16 30 H 0.04 1.71 6.31 -2.39 -0.02 1.70 16 31 H 0.06 2.84 5.93 -2.38 -0.01 2.83 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 8.27 8.42 -92.71 -0.78 7.49 16 34 H 0.20 3.22 7.57 -2.91 -0.02 3.20 16 35 H 0.14 1.48 7.22 -2.91 -0.02 1.46 16 36 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 37 H 0.15 0.57 8.06 -2.92 -0.02 0.54 16 38 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.12 2.15 7.89 -2.91 -0.02 2.13 16 40 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.24 15.90 8.73 -92.71 -0.81 15.09 16 44 H 0.06 2.06 7.02 -2.38 -0.02 2.04 16 45 H 0.05 1.73 4.82 -2.39 -0.01 1.72 16 Total: -1.00 -74.37 372.27 3.80 -70.57 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.06 Total: 16.05 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.37 Total: -5.77 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -4.03 Total: -120.96 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.66 Total: -13.81 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 1.75 Total: 53.91 kcal Total: -74.37 3.80 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970040581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.312 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds