Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21488 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.48342 * 119.99843 * 179.97438 * 5 4 2 8 8 C 1.41926 * 126.84365 * 179.71476 * 7 5 4 9 9 C 1.36714 * 103.81478 * 179.85732 * 8 7 5 10 10 C 1.47857 * 126.81373 * 180.12277 * 9 8 7 11 11 C 1.39558 * 120.14444 * 0.08015 * 10 9 8 12 12 C 1.37965 * 119.85056 * 179.76153 * 11 10 9 13 13 C 1.38347 * 120.14597 * 0.51562 * 12 11 10 14 14 C 1.38360 * 120.28967 * 359.73482 * 13 12 11 15 15 C 1.37963 * 120.14293 * 0.02562 * 14 13 12 16 16 O 1.34464 * 106.36511 * 0.40238 * 9 8 7 17 17 N 1.20871 * 111.73765 * 359.72173 * 16 9 8 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.07996 * 128.08948 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.07285 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.92440 * 180.25014 * 12 11 10 37 37 H 1.07999 * 119.85735 * 179.76754 * 13 12 11 38 38 H 1.08002 * 119.92930 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.07270 * 180.02562 * 15 14 13 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1606 -2.4115 7 6 2.6422 -0.7174 -3.5681 8 6 2.8273 -0.1566 -4.8587 9 6 3.2969 -1.2018 -5.6045 10 6 3.6626 -1.1743 -7.0368 11 6 3.5431 0.0084 -7.7681 12 6 3.8907 0.0284 -9.1031 13 6 4.3467 -1.1231 -9.7196 14 6 4.4625 -2.3001 -9.0016 15 6 4.1229 -2.3325 -7.6648 16 8 3.3542 -2.2611 -4.7783 17 7 2.9905 -1.9777 -3.6610 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.6424 0.8588 -5.1766 35 1 3.1826 0.9067 -7.2891 36 1 3.8026 0.9440 -9.6691 37 1 4.6140 -1.1030 -10.7658 38 1 4.8196 -3.1955 -9.4887 39 1 4.2142 -3.2518 -7.1054 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970093158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 125.163856 kcal Electronic energy + Delta-G solvation = -28491.537550 eV Core-core repulsion = 24480.052718 eV Total energy + Delta-G solvation = -4011.484832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.31174 -40.08461 -39.57109 -38.75462 -34.78013 -34.39659 -33.57530 -32.38734 -31.49127 -30.18004 -29.75617 -28.01970 -25.44989 -25.36903 -24.18294 -23.83361 -22.87746 -22.27158 -21.09427 -20.12930 -19.18294 -18.43561 -18.07103 -17.45851 -17.02030 -16.79294 -16.05625 -15.67685 -15.39127 -15.26054 -15.10092 -14.73638 -14.30766 -13.99787 -13.81871 -13.74101 -13.65791 -13.46242 -13.17681 -12.62845 -12.13769 -11.96738 -11.77556 -11.71187 -11.55982 -11.39865 -11.21921 -10.82668 -10.76722 -10.70857 -10.58723 -10.38577 -10.21558 -10.05420 -9.50053 -9.23842 -9.09902 -8.94573 -8.86328 -8.82962 -7.10482 -6.29580 -3.22528 0.14094 0.86543 1.05979 1.72079 2.46817 2.90097 3.10122 3.31479 3.38018 3.41985 3.62626 3.72817 4.06010 4.37587 4.44168 4.56359 4.58408 4.66735 4.75059 4.79361 4.87085 4.95048 4.98932 5.10416 5.13430 5.33188 5.44864 5.48023 5.54093 5.65610 5.80695 5.89616 5.89957 5.96816 5.98719 6.13982 6.21424 6.26908 6.35338 6.36897 6.38319 6.50888 6.73968 6.86918 7.11843 7.23166 7.41805 7.73518 8.08963 8.24395 8.98046 9.50603 10.37542 11.21212 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.002196 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.045056 B =12749.855648 C =13223.281018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.171 3.829 3 H 0.088 0.912 4 N -0.703 5.703 5 C 0.597 3.403 6 O -0.523 6.523 7 C -0.017 4.017 8 C -0.165 4.165 9 C 0.006 3.994 10 C -0.022 4.022 11 C -0.089 4.089 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.093 4.093 16 O 0.130 5.870 17 N -0.327 5.327 18 C -0.147 4.147 19 C 0.132 3.868 20 N -0.623 5.623 21 C -0.299 4.299 22 H 0.083 0.917 23 C -0.024 4.024 24 N -0.934 5.934 25 Si 1.067 2.933 26 H -0.296 1.296 27 H -0.292 1.292 28 H -0.288 1.288 29 C 0.097 3.903 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.404 0.596 34 H 0.184 0.816 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.510 1.091 -26.013 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.354 5.354 5 C 0.380 3.620 6 O -0.398 6.398 7 C -0.176 4.176 8 C -0.187 4.187 9 C -0.057 4.057 10 C -0.023 4.023 11 C -0.108 4.108 12 C -0.135 4.135 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.112 4.112 16 O 0.052 5.948 17 N -0.026 5.026 18 C -0.167 4.167 19 C 0.005 3.995 20 N -0.352 5.352 21 C -0.425 4.425 22 H 0.100 0.900 23 C -0.223 4.223 24 N -0.577 5.577 25 Si 0.901 3.099 26 H -0.224 1.224 27 H -0.220 1.220 28 H -0.215 1.215 29 C -0.029 4.029 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.239 0.761 34 H 0.201 0.799 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.507 -0.484 -25.442 30.887 hybrid contribution 0.566 1.606 0.329 1.734 sum 18.072 1.122 -25.113 30.960 Atomic orbital electron populations 1.22248 0.92873 1.03547 1.02322 1.20739 0.95727 0.95772 0.80925 0.89395 1.46078 1.65393 1.14431 1.09468 1.16809 0.78083 0.85848 0.81272 1.90797 1.50192 1.14660 1.84130 1.23504 1.05782 0.90896 0.97401 1.22599 1.03713 1.01624 0.90749 1.22454 1.03498 0.86688 0.93019 1.17588 1.02718 0.95333 0.86687 1.21169 0.98582 0.96725 0.94279 1.21105 0.99247 0.98866 0.94310 1.21373 0.98049 0.92800 1.00239 1.21142 1.00013 0.98555 0.93911 1.21336 0.97155 0.97495 0.95176 1.84859 1.61515 1.34488 1.13923 1.74160 1.13095 1.16139 0.99192 1.23256 0.98512 0.99747 0.95207 1.22280 0.88385 0.96203 0.92586 1.46070 1.05068 1.20571 1.63463 1.20067 0.83846 1.00513 1.38079 0.89963 1.25653 0.94895 1.00685 1.01063 1.70913 1.19186 1.31625 1.35936 0.83767 0.74444 0.76226 0.75501 1.22393 1.22024 1.21484 1.22876 0.92235 0.93134 0.94613 0.91912 0.88628 0.94379 0.76101 0.79912 0.85033 0.85107 0.85513 0.85222 0.84855 0.90270 0.93380 0.94077 0.92920 0.93693 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.06 37.16 0.30 -2.75 16 2 C 0.17 2.91 2.76 -67.93 -0.19 2.72 16 3 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 4 N -0.70 -10.88 5.07 -54.60 -0.28 -11.16 16 5 C 0.60 9.46 7.81 -12.10 -0.09 9.37 16 6 O -0.52 -9.54 16.61 5.38 0.09 -9.45 16 7 C -0.02 -0.24 7.18 -82.62 -0.59 -0.83 16 8 C -0.16 -1.82 10.34 -38.72 -0.40 -2.22 16 9 C 0.01 0.06 7.15 -36.20 -0.26 -0.20 16 10 C -0.02 -0.17 5.87 -104.98 -0.62 -0.79 16 11 C -0.09 -0.58 9.58 -39.19 -0.38 -0.96 16 12 C -0.12 -0.62 10.03 -39.64 -0.40 -1.01 16 13 C -0.11 -0.52 10.04 -39.50 -0.40 -0.91 16 14 C -0.12 -0.63 10.03 -39.64 -0.40 -1.02 16 15 C -0.09 -0.63 9.73 -39.19 -0.38 -1.01 16 16 O 0.13 1.45 11.01 16.05 0.18 1.63 16 17 N -0.33 -4.27 11.81 33.35 0.39 -3.88 16 18 C -0.15 -2.46 4.25 -89.97 -0.38 -2.84 16 19 C 0.13 2.50 7.86 -8.51 -0.07 2.43 16 20 N -0.62 -14.58 2.09 -184.59 -0.39 -14.96 16 21 C -0.30 -8.32 9.92 -15.06 -0.15 -8.46 16 22 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 23 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 24 N -0.93 -29.38 13.71 55.49 0.76 -28.62 16 25 Si 1.07 26.78 24.89 -169.99 -4.23 22.55 16 26 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.29 -6.90 5.95 56.52 0.34 -6.57 16 28 H -0.29 -6.75 6.22 56.52 0.35 -6.40 16 29 C 0.10 1.97 4.68 -8.36 -0.04 1.93 16 30 H 0.06 1.38 5.50 -51.93 -0.29 1.10 16 31 H 0.10 2.12 5.93 -51.93 -0.31 1.82 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 5.73 8.36 -40.82 -0.34 5.38 16 34 H 0.18 1.65 7.46 -52.49 -0.39 1.26 16 35 H 0.13 0.69 7.15 -52.49 -0.38 0.32 16 36 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 37 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 38 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 39 H 0.13 0.76 7.96 -52.48 -0.42 0.34 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 44 H 0.05 0.90 7.61 -51.93 -0.40 0.51 16 45 H 0.06 1.17 3.47 -51.93 -0.18 0.99 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -33.46 369.78 -8.17 -41.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.74 Total: 4.05 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.53 Total: -7.36 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.49 Total: -58.62 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.27 Total: -7.82 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.23 Total: 22.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.46 -8.17 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970093158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.795 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds