Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21488 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.48342 * 119.99843 * 179.97438 * 5 4 2 8 8 C 1.41926 * 126.84365 * 179.71476 * 7 5 4 9 9 C 1.36714 * 103.81478 * 179.85732 * 8 7 5 10 10 C 1.47857 * 126.81373 * 180.12277 * 9 8 7 11 11 C 1.39558 * 120.14444 * 0.08015 * 10 9 8 12 12 C 1.37965 * 119.85056 * 179.76153 * 11 10 9 13 13 C 1.38347 * 120.14597 * 0.51562 * 12 11 10 14 14 C 1.38360 * 120.28967 * 359.73482 * 13 12 11 15 15 C 1.37963 * 120.14293 * 0.02562 * 14 13 12 16 16 O 1.34464 * 106.36511 * 0.40238 * 9 8 7 17 17 N 1.20871 * 111.73765 * 359.72173 * 16 9 8 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.07996 * 128.08948 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.07285 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.92440 * 180.25014 * 12 11 10 37 37 H 1.07999 * 119.85735 * 179.76754 * 13 12 11 38 38 H 1.08002 * 119.92930 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.07270 * 180.02562 * 15 14 13 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1606 -2.4115 7 6 2.6422 -0.7174 -3.5681 8 6 2.8273 -0.1566 -4.8587 9 6 3.2969 -1.2018 -5.6045 10 6 3.6626 -1.1743 -7.0368 11 6 3.5431 0.0084 -7.7681 12 6 3.8907 0.0284 -9.1031 13 6 4.3467 -1.1231 -9.7196 14 6 4.4625 -2.3001 -9.0016 15 6 4.1229 -2.3325 -7.6648 16 8 3.3542 -2.2611 -4.7783 17 7 2.9905 -1.9777 -3.6610 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.6424 0.8588 -5.1766 35 1 3.1826 0.9067 -7.2891 36 1 3.8026 0.9440 -9.6691 37 1 4.6140 -1.1030 -10.7658 38 1 4.8196 -3.1955 -9.4887 39 1 4.2142 -3.2518 -7.1054 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970093158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 103.894751 kcal Electronic energy + Delta-G solvation = -28492.459847 eV Core-core repulsion = 24480.052718 eV Total energy + Delta-G solvation = -4012.407130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.21877 -41.50646 -40.20617 -40.00188 -36.19901 -35.30595 -34.56265 -34.24921 -31.92458 -31.50615 -30.55423 -29.87720 -27.04869 -26.58970 -25.31116 -24.84641 -23.72160 -22.90778 -22.67915 -21.29232 -20.55876 -19.58087 -19.18888 -18.98710 -18.10708 -17.55232 -17.17220 -17.00834 -16.71472 -16.23800 -16.08115 -15.84381 -15.77928 -15.23598 -15.12762 -14.86973 -14.36934 -14.28293 -14.10607 -13.92933 -13.61717 -13.41681 -13.11666 -13.00630 -12.90231 -12.55743 -12.27409 -12.24903 -12.09189 -11.96287 -11.76935 -11.68804 -11.58289 -11.39770 -11.20846 -10.99728 -10.86532 -10.31437 -9.91017 -9.41336 -9.10502 -8.57603 -5.41327 -0.49362 0.08166 0.45966 1.06469 1.35248 1.45083 1.62282 1.63373 1.78740 1.94451 2.54055 2.72197 2.87423 3.03051 3.23791 3.27440 3.48223 3.68806 3.72975 3.95474 3.99607 4.06645 4.12133 4.16735 4.32383 4.36489 4.44086 4.52035 4.60868 4.63834 4.67094 4.70534 4.75279 4.83920 4.91140 4.94043 4.95312 5.11751 5.22945 5.25873 5.37728 5.44015 5.49914 5.52117 5.58081 5.98563 5.99435 6.21201 6.74229 6.78660 6.90482 7.37420 8.32660 8.95445 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.002196 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.045056 B =12749.855648 C =13223.281018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.179 3.821 3 H 0.093 0.907 4 N -0.698 5.698 5 C 0.599 3.401 6 O -0.551 6.551 7 C -0.036 4.036 8 C -0.176 4.176 9 C 0.025 3.975 10 C -0.048 4.048 11 C -0.095 4.095 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.123 4.123 15 C -0.101 4.101 16 O 0.135 5.865 17 N -0.339 5.339 18 C -0.117 4.117 19 C 0.129 3.871 20 N -0.653 5.653 21 C -0.269 4.269 22 H 0.049 0.951 23 C -0.087 4.087 24 N -0.977 5.977 25 Si 1.103 2.897 26 H -0.313 1.313 27 H -0.275 1.275 28 H -0.257 1.257 29 C 0.089 3.911 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.413 0.587 34 H 0.198 0.802 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.245 0.755 44 H 0.062 0.938 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.014 0.409 -28.970 36.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.076 3.924 3 H 0.111 0.889 4 N -0.349 5.349 5 C 0.384 3.616 6 O -0.428 6.428 7 C -0.193 4.193 8 C -0.198 4.198 9 C -0.038 4.038 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.140 4.140 13 C -0.120 4.120 14 C -0.141 4.141 15 C -0.120 4.120 16 O 0.056 5.944 17 N -0.038 5.038 18 C -0.136 4.136 19 C 0.004 3.996 20 N -0.382 5.382 21 C -0.397 4.397 22 H 0.067 0.933 23 C -0.279 4.279 24 N -0.623 5.623 25 Si 0.931 3.069 26 H -0.241 1.241 27 H -0.202 1.202 28 H -0.182 1.182 29 C -0.036 4.036 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.249 0.751 34 H 0.215 0.785 35 H 0.157 0.843 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.089 -1.154 -28.401 35.393 hybrid contribution -0.427 1.928 1.081 2.251 sum 20.662 0.774 -27.320 34.262 Atomic orbital electron populations 1.22072 0.95535 1.01551 1.00762 1.20529 0.93373 0.96526 0.82022 0.88886 1.45928 1.65169 1.14780 1.08981 1.17038 0.77301 0.85549 0.81751 1.90778 1.51426 1.15940 1.84672 1.23292 1.07206 0.91484 0.97357 1.22779 1.04453 1.02650 0.89913 1.22782 1.01733 0.85659 0.93592 1.17709 1.04920 0.96596 0.85702 1.21389 0.98438 0.96587 0.94975 1.21429 0.98661 1.00052 0.93892 1.21769 0.96478 0.92327 1.01451 1.21450 0.99541 0.99728 0.93380 1.21523 0.97076 0.97336 0.96042 1.84825 1.61021 1.34882 1.13670 1.74140 1.13662 1.15898 1.00058 1.23049 1.00210 0.96907 0.93465 1.22528 0.86530 0.95990 0.94568 1.46124 1.04955 1.23022 1.64063 1.19847 0.86256 0.98628 1.34982 0.93290 1.26852 0.94739 1.03858 1.02442 1.71015 1.21040 1.31578 1.38703 0.83351 0.74891 0.72928 0.75730 1.24127 1.20180 1.18214 1.23102 0.92251 0.94033 0.94196 0.93971 0.91328 0.94804 0.75078 0.78511 0.84266 0.82974 0.83009 0.83101 0.84392 0.85773 0.93242 0.91741 0.94600 0.92001 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.06 71.98 0.58 -5.08 16 2 C 0.18 5.75 2.76 44.99 0.12 5.88 16 3 H 0.09 2.99 7.58 -2.39 -0.02 2.97 16 4 N -0.70 -20.25 5.07 -444.95 -2.26 -22.51 16 5 C 0.60 18.34 7.81 86.93 0.68 19.02 16 6 O -0.55 -19.77 16.61 -3.68 -0.06 -19.83 16 7 C -0.04 -0.95 7.18 42.86 0.31 -0.64 16 8 C -0.18 -3.69 10.34 22.83 0.24 -3.45 16 9 C 0.03 0.47 7.15 24.46 0.17 0.64 16 10 C -0.05 -0.68 5.87 -20.09 -0.12 -0.80 16 11 C -0.10 -1.07 9.58 22.52 0.22 -0.85 16 12 C -0.12 -0.94 10.03 22.23 0.22 -0.72 16 13 C -0.10 -0.66 10.04 22.32 0.22 -0.44 16 14 C -0.12 -0.96 10.03 22.23 0.22 -0.74 16 15 C -0.10 -1.17 9.73 22.52 0.22 -0.95 16 16 O 0.13 2.85 11.01 67.61 0.74 3.60 16 17 N -0.34 -8.44 11.81 -48.99 -0.58 -9.01 16 18 C -0.12 -3.49 4.25 -10.37 -0.04 -3.54 16 19 C 0.13 4.55 7.86 83.18 0.65 5.20 16 20 N -0.65 -29.88 2.09 -737.90 -1.54 -31.42 16 21 C -0.27 -15.33 9.92 84.03 0.83 -14.50 16 22 H 0.05 3.05 8.05 -2.91 -0.02 3.02 16 23 C -0.09 -5.25 5.50 84.86 0.47 -4.79 16 24 N -0.98 -64.10 13.71 21.65 0.30 -63.81 16 25 Si 1.10 54.26 24.89 68.60 1.71 55.97 16 26 H -0.31 -16.09 7.11 99.48 0.71 -15.39 16 27 H -0.27 -12.55 5.95 99.48 0.59 -11.96 16 28 H -0.26 -11.21 6.22 99.48 0.62 -10.59 16 29 C 0.09 3.34 4.68 83.27 0.39 3.73 16 30 H 0.04 1.84 5.50 -2.39 -0.01 1.83 16 31 H 0.07 3.11 5.93 -2.39 -0.01 3.09 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.41 10.67 8.36 -92.71 -0.77 9.89 16 34 H 0.20 3.36 7.46 -2.91 -0.02 3.34 16 35 H 0.14 1.23 7.15 -2.91 -0.02 1.21 16 36 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 37 H 0.15 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.15 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.14 1.35 7.96 -2.91 -0.02 1.33 16 40 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 41 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 42 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 44 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 45 H 0.05 1.88 3.47 -2.39 -0.01 1.87 16 Total: -1.00 -75.72 369.78 3.72 -72.00 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.02 Total: 17.02 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.39 Total: -2.01 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -4.08 Total: -126.75 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.68 Total: -16.23 kcal Atomic # 14 Polarization: 54.26 SS G_CDS: 1.71 Total: 55.97 kcal Total: -75.72 3.72 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970093158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.892 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds