Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21648 * 119.99912 * 0.02562 * 5 4 2 7 7 C 1.47150 * 120.00271 * 179.97438 * 5 4 2 8 8 C 1.39030 * 121.09823 * 0.02562 * 7 5 4 9 9 N 1.32069 * 121.40800 * 180.02562 * 8 7 5 10 10 C 1.31830 * 123.60051 * 359.97438 * 9 8 7 11 11 O 1.35254 * 119.61097 * 180.02562 * 10 9 8 12 12 C 1.41172 * 120.77499 * 0.02562 * 10 9 8 13 13 C 1.40128 * 122.11022 * 180.02562 * 12 10 9 14 14 C 1.36348 * 119.51205 * 179.97438 * 13 12 10 15 15 C 1.39188 * 121.05352 * 0.02562 * 14 13 12 16 16 C 1.36516 * 120.89213 * 359.97438 * 15 14 13 17 17 C 1.39618 * 119.43654 * 359.70997 * 16 15 14 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36940 * 136.05404 * 207.09125 * 20 19 18 22 22 H 1.07994 * 120.00255 * 7.50552 * 21 20 19 23 23 C 1.38809 * 119.99403 * 187.50851 * 21 20 19 24 24 N 1.31623 * 119.99672 * 174.39762 * 23 21 20 25 25 Si 1.86807 * 120.00352 * 354.39502 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95922 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.96098 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.96130 * 25 23 21 29 29 C 1.47068 * 87.88382 * 27.34125 * 20 19 18 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 1.08999 * 109.47223 * 304.63944 * 1 2 3 32 32 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 33 33 H 0.96998 * 120.00354 * 94.99936 * 4 2 1 34 34 H 1.08006 * 119.29708 * 0.02562 * 8 7 5 35 35 H 0.96708 * 113.99246 * 90.00248 * 11 10 9 36 36 H 1.08001 * 120.24096 * 0.02562 * 13 12 10 37 37 H 1.07995 * 119.47947 * 179.97438 * 14 13 12 38 38 H 1.07997 * 119.55440 * 180.02562 * 15 14 13 39 39 H 1.07996 * 120.27882 * 179.97438 * 16 15 14 40 40 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 43 43 H 0.96995 * 119.99989 * 355.00653 * 24 23 21 44 44 H 1.09002 * 113.46505 * 87.44231 * 29 20 19 45 45 H 1.08999 * 113.46808 * 217.87742 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8574 1.1620 2.4118 7 6 2.6371 -0.7120 3.5588 8 6 2.9742 -2.0603 3.5222 9 7 3.4141 -2.6891 4.5971 10 6 3.5688 -2.1079 5.7702 11 8 4.0263 -2.8297 6.8186 12 6 3.2627 -0.7409 5.9450 13 6 3.4172 -0.0948 7.1789 14 6 3.1059 1.2281 7.2880 15 6 2.6364 1.9479 6.1931 16 6 2.4747 1.3484 4.9773 17 6 2.7910 -0.0036 4.8314 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7332 -4.0013 22 1 4.9534 -1.3280 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3276 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5117 30 1 -0.3633 -1.0243 0.0831 31 1 -0.3633 0.5841 0.8455 32 1 -0.3633 0.4403 -0.9286 33 1 2.2490 -1.6317 1.1527 34 1 2.8743 -2.6051 2.5951 35 1 4.9892 -2.8262 6.9082 36 1 3.7809 -0.6407 8.0369 37 1 3.2247 1.7254 8.2392 38 1 2.3975 2.9950 6.3067 39 1 2.1092 1.9162 4.1345 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970532086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 49.357539 kcal Electronic energy + Delta-G solvation = -28866.083046 eV Core-core repulsion = 24851.311005 eV Total energy + Delta-G solvation = -4014.772041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43442 -39.94368 -38.65990 -38.24830 -37.09817 -35.16946 -32.64128 -32.34401 -31.57805 -31.18812 -29.32270 -27.84365 -25.48501 -25.08260 -24.04436 -23.93239 -22.91919 -21.24814 -20.80365 -19.68091 -19.32297 -18.16444 -17.92403 -17.59818 -17.40224 -16.27984 -16.08798 -15.41571 -15.32178 -15.27730 -14.90065 -14.62475 -14.17810 -13.94603 -13.82094 -13.58120 -13.36645 -13.28091 -13.00296 -12.49772 -12.36835 -12.34988 -12.33171 -12.01957 -11.85853 -11.76177 -11.27763 -11.11109 -10.75959 -10.37528 -10.29403 -10.21672 -10.19383 -9.64565 -9.53534 -9.26607 -9.17817 -9.06488 -8.91938 -8.40635 -7.18497 -6.30978 -3.25205 -0.39486 0.46379 1.27629 2.32855 2.92161 2.95322 3.02665 3.39262 3.43578 3.64092 3.65034 4.01970 4.16166 4.27739 4.44326 4.58608 4.61470 4.64256 4.69717 4.86261 4.91638 5.00161 5.03627 5.20341 5.26916 5.35790 5.45152 5.50388 5.53134 5.67127 5.73771 5.83735 5.88902 5.98818 6.06388 6.10027 6.14673 6.20240 6.22138 6.29056 6.34037 6.44455 6.53320 6.87549 6.92620 7.09471 7.36118 7.41880 8.06087 8.22082 8.95884 9.48300 10.34464 11.18917 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.002436 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.153534 B =11491.226628 C =12132.621979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.093 0.907 4 N -0.711 5.711 5 C 0.570 3.430 6 O -0.534 6.534 7 C -0.183 4.183 8 C 0.149 3.851 9 N -0.516 5.516 10 C 0.383 3.617 11 O -0.476 6.476 12 C -0.130 4.130 13 C -0.083 4.083 14 C -0.120 4.120 15 C -0.093 4.093 16 C -0.111 4.111 17 C 0.024 3.976 18 C -0.143 4.143 19 C 0.129 3.871 20 N -0.628 5.628 21 C -0.305 4.305 22 H 0.082 0.918 23 C -0.026 4.026 24 N -0.934 5.934 25 Si 1.070 2.930 26 H -0.295 1.295 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.109 3.891 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.164 0.836 35 H 0.408 0.592 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.169 0.831 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.261 0.739 44 H 0.047 0.953 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -0.088 29.970 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.361 5.361 5 C 0.357 3.643 6 O -0.413 6.413 7 C -0.188 4.188 8 C 0.003 3.997 9 N -0.235 5.235 10 C 0.191 3.809 11 O -0.284 6.284 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.138 4.138 15 C -0.112 4.112 16 C -0.129 4.129 17 C 0.019 3.981 18 C -0.163 4.163 19 C 0.002 3.998 20 N -0.356 5.356 21 C -0.431 4.431 22 H 0.100 0.900 23 C -0.224 4.224 24 N -0.576 5.576 25 Si 0.902 3.098 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.213 1.213 29 C -0.017 4.017 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.181 0.819 35 H 0.268 0.732 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.186 0.814 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.791 0.425 28.624 29.207 hybrid contribution 1.655 -0.417 1.153 2.060 sum -4.136 0.008 29.778 30.063 Atomic orbital electron populations 1.22141 0.95033 1.02111 1.02595 1.21078 0.94040 0.97517 0.82559 0.88909 1.46010 1.66508 1.14081 1.09483 1.17640 0.77757 0.86390 0.82519 1.90641 1.50970 1.15375 1.84356 1.21908 1.07027 0.95505 0.94389 1.22501 0.91435 0.90270 0.95467 1.66583 1.17041 1.40864 0.99019 1.19415 0.90967 0.85312 0.85219 1.84613 1.28221 1.72337 1.43225 1.18902 1.05586 0.93447 0.95460 1.20895 0.98703 0.94861 0.95819 1.21025 0.99130 0.94365 0.99306 1.21246 0.96815 1.00555 0.92607 1.21849 0.98005 0.93444 0.99564 1.18793 0.94860 0.94095 0.90376 1.23616 0.98555 1.00476 0.93630 1.22310 0.92463 0.98533 0.86464 1.45964 1.19313 1.69237 1.01089 1.20151 1.08508 1.30871 0.83540 0.89985 1.25750 1.05699 0.99815 0.91168 1.70917 1.12024 1.46279 1.28356 0.83725 0.75066 0.76186 0.74811 1.22202 1.22009 1.21294 1.22733 0.90461 0.95716 0.92773 0.92439 0.92335 0.91107 0.76568 0.81868 0.73183 0.84510 0.85310 0.85123 0.81357 0.88175 0.93850 0.94553 0.92946 0.93550 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.15 2.02 2.35 -67.93 -0.16 1.86 16 3 H 0.09 1.40 7.41 -51.93 -0.38 1.01 16 4 N -0.71 -8.10 4.90 -54.96 -0.27 -8.37 16 5 C 0.57 7.23 7.72 -12.64 -0.10 7.13 16 6 O -0.53 -8.07 13.38 5.24 0.07 -8.00 16 7 C -0.18 -2.09 6.06 -102.68 -0.62 -2.71 16 8 C 0.15 1.52 10.70 -17.16 -0.18 1.33 16 9 N -0.52 -5.71 10.25 -12.66 -0.13 -5.84 16 10 C 0.38 3.76 7.79 -16.44 -0.13 3.64 16 11 O -0.48 -3.46 12.80 -17.46 -0.22 -3.69 16 12 C -0.13 -1.28 5.75 -106.78 -0.61 -1.90 16 13 C -0.08 -0.62 9.58 -39.55 -0.38 -1.00 16 14 C -0.12 -0.84 9.95 -39.91 -0.40 -1.23 16 15 C -0.09 -0.77 9.96 -39.85 -0.40 -1.16 16 16 C -0.11 -1.21 9.32 -39.69 -0.37 -1.58 16 17 C 0.02 0.27 5.90 -104.77 -0.62 -0.35 16 18 C -0.14 -2.25 3.52 -89.97 -0.32 -2.56 16 19 C 0.13 2.43 8.12 -8.50 -0.07 2.36 16 20 N -0.63 -15.26 3.69 -184.58 -0.68 -15.94 16 21 C -0.30 -8.79 11.08 -15.06 -0.17 -8.95 16 22 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 23 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 24 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 25 Si 1.07 26.66 25.16 -169.99 -4.28 22.38 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -6.80 6.51 56.52 0.37 -6.43 16 28 H -0.29 -6.64 6.21 56.52 0.35 -6.29 16 29 C 0.11 2.22 5.27 -8.37 -0.04 2.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 3.63 6.69 -40.82 -0.27 3.36 16 34 H 0.16 1.24 6.43 -52.48 -0.34 0.91 16 35 H 0.41 0.89 9.06 45.56 0.41 1.30 16 36 H 0.14 0.70 7.66 -52.49 -0.40 0.30 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.17 2.06 5.23 -52.49 -0.27 1.79 16 40 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 43 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 44 H 0.05 0.94 7.50 -51.93 -0.39 0.55 16 45 H 0.06 1.15 4.72 -51.93 -0.25 0.90 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -36.43 368.17 -8.44 -44.87 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.93 Total: 3.23 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -4.31 Total: -5.36 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.32 Total: -58.97 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.15 Total: -11.69 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -4.28 Total: 22.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.43 -8.44 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970532086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.228 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds