Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47004 * 2 1 4 4 N 1.46505 * 109.46811 * 119.99391 * 2 1 3 5 5 C 1.34770 * 120.00105 * 275.00277 * 4 2 1 6 6 O 1.21645 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.47097 * 119.99839 * 180.02562 * 5 4 2 8 8 C 1.42467 * 128.38290 * 5.45708 * 7 5 4 9 9 N 1.29883 * 106.40985 * 180.24671 * 8 7 5 10 10 O 1.20747 * 112.75783 * 359.76485 * 9 8 7 11 11 C 1.34234 * 111.94857 * 359.97438 * 10 9 8 12 12 C 1.47552 * 127.17254 * 179.97438 * 11 10 9 13 13 C 1.39708 * 120.15411 * 229.22229 * 12 11 10 14 14 C 1.37923 * 119.83846 * 179.97438 * 13 12 11 15 15 C 1.38376 * 120.15947 * 0.02562 * 14 13 12 16 16 C 1.38384 * 120.31834 * 359.97438 * 15 14 13 17 17 C 1.37921 * 120.15681 * 0.02562 * 16 15 14 18 18 C 1.52999 * 109.47104 * 239.99416 * 2 1 3 19 19 C 1.53944 * 113.74065 * 158.74191 * 18 2 1 20 20 N 1.47804 * 86.03889 * 222.08445 * 19 18 2 21 21 C 1.36939 * 134.46092 * 204.64102 * 20 19 18 22 22 H 1.07993 * 120.00334 * 183.35148 * 21 20 19 23 23 C 1.38815 * 119.99481 * 3.34897 * 21 20 19 24 24 N 1.31620 * 120.00155 * 353.03127 * 23 21 20 25 25 Si 1.86795 * 119.99640 * 173.02432 * 23 21 20 26 26 H 1.48507 * 109.47035 * 94.98500 * 25 23 21 27 27 H 1.48504 * 109.47473 * 214.98247 * 25 23 21 28 28 H 1.48501 * 109.47383 * 334.98510 * 25 23 21 29 29 C 1.47590 * 91.05106 * 24.55202 * 20 19 18 30 30 H 1.08998 * 109.47712 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47812 * 300.00713 * 1 2 3 32 32 H 1.09007 * 109.47095 * 60.00236 * 1 2 3 33 33 H 0.97003 * 119.99544 * 94.99865 * 4 2 1 34 34 H 1.07996 * 126.79967 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.08101 * 0.02562 * 13 12 11 36 36 H 1.08007 * 119.92061 * 179.72436 * 14 13 12 37 37 H 1.08006 * 119.84652 * 179.97438 * 15 14 13 38 38 H 1.08001 * 119.92313 * 180.02562 * 16 15 14 39 39 H 1.07999 * 120.08338 * 180.02562 * 17 16 15 40 40 H 1.09002 * 112.94721 * 290.33830 * 18 2 1 41 41 H 1.09004 * 113.76863 * 336.35541 * 19 18 2 42 42 H 1.09002 * 113.76593 * 107.74328 * 19 18 2 43 43 H 0.97000 * 119.99817 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.76842 * 221.15183 * 29 20 19 45 45 H 1.08996 * 113.86935 * 89.76797 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8580 1.1623 2.4116 7 6 2.6377 -0.7113 3.5581 8 6 3.1242 -2.0455 3.6727 9 7 3.4378 -2.2157 4.9216 10 8 3.2376 -1.2314 5.5918 11 6 2.7424 -0.2196 4.8618 12 6 2.3776 1.1284 5.3384 13 6 1.1369 1.6782 5.0064 14 6 0.8025 2.9386 5.4558 15 6 1.6926 3.6584 6.2332 16 6 2.9233 3.1201 6.5659 17 6 3.2712 1.8609 6.1236 18 6 2.0400 -0.7214 -1.2492 19 6 3.4847 -0.3522 -1.6316 20 7 2.9979 -0.3179 -3.0267 21 6 3.5875 -0.4760 -4.2525 22 1 3.0046 -0.3485 -5.1526 23 6 4.9346 -0.8001 -4.3380 24 7 5.6768 -0.8209 -3.2512 25 14 5.6939 -1.2067 -5.9955 26 1 6.3150 0.0145 -6.5685 27 1 6.7318 -2.2545 -5.8210 28 1 4.6388 -1.7035 -6.9149 29 6 1.6213 -0.0473 -2.5684 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1528 34 1 3.2113 -2.7727 2.8791 35 1 0.4411 1.1174 4.4001 36 1 -0.1545 3.3667 5.1962 37 1 1.4257 4.6451 6.5820 38 1 3.6130 3.6873 7.1734 39 1 4.2318 1.4418 6.3843 40 1 1.8527 -1.7949 -1.2262 41 1 3.8047 0.6189 -1.2538 42 1 4.2070 -1.1449 -1.4364 43 1 6.6181 -1.0470 -3.3111 44 1 0.8586 -0.5971 -3.1199 45 1 1.3909 1.0131 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970668156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = 109.593848 kcal Electronic energy + Delta-G solvation = -28893.785128 eV Core-core repulsion = 24881.625129 eV Total energy + Delta-G solvation = -4012.159999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.15393 -39.82403 -39.20341 -38.03926 -34.87569 -34.23568 -33.26745 -32.20345 -31.19354 -30.63988 -29.65194 -27.54608 -25.51228 -24.62534 -23.94432 -23.77245 -22.69628 -21.97429 -20.93888 -20.43752 -19.26823 -18.39331 -17.89109 -17.26107 -16.78792 -16.39227 -16.11835 -15.24992 -15.03679 -14.92313 -14.72424 -14.65746 -14.06404 -13.84822 -13.68319 -13.60716 -13.39149 -13.07664 -13.04824 -12.47270 -12.17981 -11.91764 -11.69932 -11.57509 -11.40260 -11.35552 -11.29685 -10.96347 -10.74940 -10.70935 -10.41200 -10.13135 -10.03405 -9.82562 -9.78805 -9.46289 -9.15413 -8.90965 -8.76454 -8.73879 -6.89755 -5.78511 -3.09604 0.35825 1.19388 1.32950 1.64476 2.54015 3.18983 3.22328 3.38035 3.43233 3.45383 3.52937 4.00737 4.26147 4.43724 4.44410 4.66883 4.70660 4.85426 4.91264 4.99852 5.15369 5.20754 5.24163 5.26073 5.31836 5.50134 5.55629 5.61523 5.62559 5.75297 5.77922 5.90846 5.98594 6.14727 6.19191 6.20696 6.25677 6.31875 6.37265 6.54590 6.62298 6.66181 6.75357 7.21136 7.35146 7.53492 7.55943 7.88764 7.96798 8.23657 9.03299 9.70001 10.59039 11.38839 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002491 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.433224 B =11239.914221 C =11690.843067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.090 0.910 4 N -0.707 5.707 5 C 0.593 3.407 6 O -0.528 6.528 7 C -0.239 4.239 8 C 0.029 3.971 9 N -0.362 5.362 10 O 0.110 5.890 11 C 0.081 3.919 12 C -0.036 4.036 13 C -0.044 4.044 14 C -0.123 4.123 15 C -0.098 4.098 16 C -0.128 4.128 17 C -0.084 4.084 18 C -0.147 4.147 19 C 0.170 3.830 20 N -0.613 5.613 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.202 0.798 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 2.975 21.062 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.108 0.892 4 N -0.357 5.357 5 C 0.378 3.622 6 O -0.405 6.405 7 C -0.247 4.247 8 C -0.150 4.150 9 N -0.066 5.066 10 O 0.048 5.952 11 C 0.015 3.985 12 C -0.037 4.037 13 C -0.062 4.062 14 C -0.141 4.141 15 C -0.116 4.116 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.219 0.781 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.801 2.701 21.530 23.810 hybrid contribution 0.552 -0.251 -1.703 1.808 sum -9.249 2.450 19.827 22.015 Atomic orbital electron populations 1.22131 0.95517 1.01811 1.02167 1.21141 0.93524 0.97640 0.82882 0.89200 1.45897 1.66487 1.13998 1.09299 1.16709 0.77793 0.85996 0.81701 1.90833 1.50411 1.14614 1.84672 1.21598 1.12333 0.95631 0.95089 1.25111 0.98912 0.96202 0.94809 1.73555 1.19826 1.06735 1.06451 1.84899 1.60003 1.15284 1.35060 1.23104 0.95461 0.90602 0.89317 1.17489 0.96067 0.88349 1.01830 1.21085 0.94340 0.95372 0.95420 1.21057 1.00302 0.94294 0.98460 1.21353 0.93749 0.99630 0.96914 1.21033 0.97112 0.95382 1.01039 1.21240 0.98750 0.94684 0.95586 1.23816 1.00958 0.99682 0.92234 1.22313 0.91299 0.98495 0.83431 1.46049 1.03146 1.82687 1.01981 1.19027 0.92851 1.40393 0.82862 0.90277 1.24785 0.96056 1.02227 0.97341 1.69833 1.06174 1.54235 1.26473 0.86128 0.78918 0.77859 0.83021 1.21688 1.21603 1.20559 1.22478 0.89667 0.96614 0.90797 0.92703 0.92743 0.91296 0.76688 0.78128 0.85473 0.85325 0.85667 0.85394 0.85404 0.89357 0.95612 0.91160 0.93686 0.93701 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.31 37.16 0.35 -1.60 16 2 C 0.15 2.22 2.38 -67.93 -0.16 2.06 16 3 H 0.09 1.53 7.41 -51.93 -0.38 1.14 16 4 N -0.71 -9.15 5.07 -54.98 -0.28 -9.43 16 5 C 0.59 8.33 7.74 -12.67 -0.10 8.23 16 6 O -0.53 -8.71 13.79 5.24 0.07 -8.63 16 7 C -0.24 -2.99 6.32 -104.12 -0.66 -3.65 16 8 C 0.03 0.32 11.69 -16.75 -0.20 0.12 16 9 N -0.36 -4.46 11.98 30.84 0.37 -4.09 16 10 O 0.11 1.32 11.17 16.71 0.19 1.51 16 11 C 0.08 0.99 6.97 -35.23 -0.25 0.74 16 12 C -0.04 -0.41 5.42 -105.00 -0.57 -0.98 16 13 C -0.04 -0.48 7.91 -39.15 -0.31 -0.79 16 14 C -0.12 -1.14 10.03 -39.65 -0.40 -1.54 16 15 C -0.10 -0.81 10.04 -39.48 -0.40 -1.20 16 16 C -0.13 -1.07 10.03 -39.64 -0.40 -1.47 16 17 C -0.08 -0.83 9.79 -39.15 -0.38 -1.21 16 18 C -0.15 -2.52 3.47 -89.69 -0.31 -2.83 16 19 C 0.17 3.89 7.10 -2.84 -0.02 3.87 16 20 N -0.61 -15.52 3.70 -177.70 -0.66 -16.18 16 21 C -0.22 -6.27 10.69 -15.06 -0.16 -6.43 16 22 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.27 11.42 55.49 0.63 -26.64 16 25 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 29 C 0.13 2.56 7.64 -2.96 -0.02 2.54 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 33 H 0.40 4.30 7.86 -40.82 -0.32 3.98 16 34 H 0.20 1.59 7.77 -52.49 -0.41 1.18 16 35 H 0.13 1.43 7.52 -52.49 -0.39 1.03 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 42 H 0.07 1.77 7.18 -51.93 -0.37 1.40 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -33.60 382.33 -9.05 -42.65 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.04 Total: 2.41 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -4.08 Total: -4.46 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.07 Total: -56.34 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.26 Total: -7.12 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.60 -9.05 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970668156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.247 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds