Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47004 * 2 1 4 4 N 1.46505 * 109.46811 * 119.99391 * 2 1 3 5 5 C 1.34770 * 120.00105 * 275.00277 * 4 2 1 6 6 O 1.21645 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.47097 * 119.99839 * 180.02562 * 5 4 2 8 8 C 1.42467 * 128.38290 * 5.45708 * 7 5 4 9 9 N 1.29883 * 106.40985 * 180.24671 * 8 7 5 10 10 O 1.20747 * 112.75783 * 359.76485 * 9 8 7 11 11 C 1.34234 * 111.94857 * 359.97438 * 10 9 8 12 12 C 1.47552 * 127.17254 * 179.97438 * 11 10 9 13 13 C 1.39708 * 120.15411 * 229.22229 * 12 11 10 14 14 C 1.37923 * 119.83846 * 179.97438 * 13 12 11 15 15 C 1.38376 * 120.15947 * 0.02562 * 14 13 12 16 16 C 1.38384 * 120.31834 * 359.97438 * 15 14 13 17 17 C 1.37921 * 120.15681 * 0.02562 * 16 15 14 18 18 C 1.52999 * 109.47104 * 239.99416 * 2 1 3 19 19 C 1.53944 * 113.74065 * 158.74191 * 18 2 1 20 20 N 1.47804 * 86.03889 * 222.08445 * 19 18 2 21 21 C 1.36939 * 134.46092 * 204.64102 * 20 19 18 22 22 H 1.07993 * 120.00334 * 183.35148 * 21 20 19 23 23 C 1.38815 * 119.99481 * 3.34897 * 21 20 19 24 24 N 1.31620 * 120.00155 * 353.03127 * 23 21 20 25 25 Si 1.86795 * 119.99640 * 173.02432 * 23 21 20 26 26 H 1.48507 * 109.47035 * 94.98500 * 25 23 21 27 27 H 1.48504 * 109.47473 * 214.98247 * 25 23 21 28 28 H 1.48501 * 109.47383 * 334.98510 * 25 23 21 29 29 C 1.47590 * 91.05106 * 24.55202 * 20 19 18 30 30 H 1.08998 * 109.47712 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47812 * 300.00713 * 1 2 3 32 32 H 1.09007 * 109.47095 * 60.00236 * 1 2 3 33 33 H 0.97003 * 119.99544 * 94.99865 * 4 2 1 34 34 H 1.07996 * 126.79967 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.08101 * 0.02562 * 13 12 11 36 36 H 1.08007 * 119.92061 * 179.72436 * 14 13 12 37 37 H 1.08006 * 119.84652 * 179.97438 * 15 14 13 38 38 H 1.08001 * 119.92313 * 180.02562 * 16 15 14 39 39 H 1.07999 * 120.08338 * 180.02562 * 17 16 15 40 40 H 1.09002 * 112.94721 * 290.33830 * 18 2 1 41 41 H 1.09004 * 113.76863 * 336.35541 * 19 18 2 42 42 H 1.09002 * 113.76593 * 107.74328 * 19 18 2 43 43 H 0.97000 * 119.99817 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.76842 * 221.15183 * 29 20 19 45 45 H 1.08996 * 113.86935 * 89.76797 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8580 1.1623 2.4116 7 6 2.6377 -0.7113 3.5581 8 6 3.1242 -2.0455 3.6727 9 7 3.4378 -2.2157 4.9216 10 8 3.2376 -1.2314 5.5918 11 6 2.7424 -0.2196 4.8618 12 6 2.3776 1.1284 5.3384 13 6 1.1369 1.6782 5.0064 14 6 0.8025 2.9386 5.4558 15 6 1.6926 3.6584 6.2332 16 6 2.9233 3.1201 6.5659 17 6 3.2712 1.8609 6.1236 18 6 2.0400 -0.7214 -1.2492 19 6 3.4847 -0.3522 -1.6316 20 7 2.9979 -0.3179 -3.0267 21 6 3.5875 -0.4760 -4.2525 22 1 3.0046 -0.3485 -5.1526 23 6 4.9346 -0.8001 -4.3380 24 7 5.6768 -0.8209 -3.2512 25 14 5.6939 -1.2067 -5.9955 26 1 6.3150 0.0145 -6.5685 27 1 6.7318 -2.2545 -5.8210 28 1 4.6388 -1.7035 -6.9149 29 6 1.6213 -0.0473 -2.5684 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1528 34 1 3.2113 -2.7727 2.8791 35 1 0.4411 1.1174 4.4001 36 1 -0.1545 3.3667 5.1962 37 1 1.4257 4.6451 6.5820 38 1 3.6130 3.6873 7.1734 39 1 4.2318 1.4418 6.3843 40 1 1.8527 -1.7949 -1.2262 41 1 3.8047 0.6189 -1.2538 42 1 4.2070 -1.1449 -1.4364 43 1 6.6181 -1.0470 -3.3111 44 1 0.8586 -0.5971 -3.1199 45 1 1.3909 1.0131 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970668156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = 89.404431 kcal Electronic energy + Delta-G solvation = -28894.660607 eV Core-core repulsion = 24881.625129 eV Total energy + Delta-G solvation = -4013.035477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.06742 -41.01288 -40.00971 -39.52818 -36.20352 -35.19627 -34.17828 -34.06898 -31.93622 -31.84160 -30.54354 -29.34420 -26.83369 -26.06039 -25.44870 -24.66999 -23.52277 -23.07514 -22.11908 -21.56077 -20.67915 -19.37199 -18.81257 -18.75753 -18.21656 -17.41615 -17.10577 -16.90444 -16.20200 -15.90741 -15.83492 -15.73615 -15.46723 -15.20265 -14.76319 -14.61280 -14.38206 -14.26703 -14.04736 -13.80817 -13.44567 -13.21412 -13.07635 -12.95034 -12.80713 -12.66592 -12.50152 -12.28421 -12.08609 -12.02119 -11.75322 -11.66690 -11.48437 -11.27346 -11.09860 -10.92765 -10.80566 -10.06669 -9.86846 -9.57400 -8.92380 -7.91496 -5.23558 -0.51798 0.46338 0.52018 0.73464 1.45151 1.46299 1.55961 1.61298 2.11812 2.18183 2.47210 2.79235 3.12997 3.30664 3.37919 3.41218 3.49697 3.74231 3.92289 3.95411 4.01192 4.10021 4.17892 4.28835 4.31819 4.50864 4.52408 4.60027 4.61620 4.72356 4.76210 4.84435 4.88505 4.92014 5.03541 5.09212 5.11384 5.26365 5.36696 5.42659 5.46258 5.48940 5.55929 5.57094 5.67555 5.93647 5.98531 6.49983 6.91673 6.97051 7.16227 7.61171 8.57050 9.25681 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002491 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.433224 B =11239.914221 C =11690.843067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.163 3.837 3 H 0.064 0.936 4 N -0.700 5.700 5 C 0.594 3.406 6 O -0.556 6.556 7 C -0.258 4.258 8 C 0.041 3.959 9 N -0.379 5.379 10 O 0.104 5.896 11 C 0.088 3.912 12 C -0.062 4.062 13 C -0.060 4.060 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.108 4.108 19 C 0.166 3.834 20 N -0.645 5.645 21 C -0.234 4.234 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.265 1.265 29 C 0.131 3.869 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.230 0.770 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.107 0.893 41 H 0.002 0.998 42 H 0.041 0.959 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 3.043 21.376 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 H 0.082 0.918 4 N -0.351 5.351 5 C 0.381 3.619 6 O -0.435 6.435 7 C -0.266 4.266 8 C -0.138 4.138 9 N -0.085 5.085 10 O 0.045 5.955 11 C 0.022 3.978 12 C -0.064 4.064 13 C -0.078 4.078 14 C -0.149 4.149 15 C -0.113 4.113 16 C -0.146 4.146 17 C -0.113 4.113 18 C -0.128 4.128 19 C 0.041 3.959 20 N -0.371 5.371 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.805 3.195 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.190 1.190 29 C 0.006 3.994 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.248 0.752 34 H 0.247 0.753 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.155 0.845 40 H 0.125 0.875 41 H 0.020 0.980 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.240 2.763 21.861 24.737 hybrid contribution 0.951 -0.166 -1.750 1.999 sum -10.290 2.597 20.111 22.740 Atomic orbital electron populations 1.22049 0.93007 1.03179 1.02480 1.20870 0.95212 0.95863 0.82237 0.91809 1.45759 1.66278 1.14518 1.08556 1.16839 0.77265 0.85664 0.82139 1.90814 1.51688 1.15853 1.85151 1.21496 1.13841 0.96519 0.94710 1.25535 0.97288 0.95977 0.95004 1.73545 1.20899 1.07038 1.07004 1.84891 1.60261 1.15283 1.35087 1.23371 0.94232 0.90859 0.89320 1.17701 0.96940 0.88423 1.03310 1.21135 0.94307 0.96329 0.96067 1.21355 1.01424 0.93727 0.98413 1.21751 0.93220 1.00618 0.95739 1.21414 0.97707 0.94855 1.00628 1.21483 0.98972 0.95436 0.95441 1.23430 0.96061 1.00665 0.92639 1.22205 0.94099 0.96392 0.83243 1.46501 1.05833 1.82909 1.01896 1.19451 0.93254 1.39212 0.84369 0.89799 1.25630 0.96745 1.02960 1.00785 1.70026 1.05961 1.55771 1.28496 0.85084 0.78016 0.77181 0.79182 1.21771 1.21997 1.18963 1.22680 0.87580 0.97574 0.91597 0.90772 0.92821 0.90637 0.75234 0.75316 0.86522 0.83587 0.82694 0.82670 0.84515 0.87534 0.98010 0.94097 0.94386 0.91610 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.31 71.98 0.67 -2.65 16 2 C 0.16 4.57 2.38 44.99 0.11 4.68 16 3 H 0.06 2.17 7.41 -2.39 -0.02 2.16 16 4 N -0.70 -17.53 5.07 -446.11 -2.26 -19.79 16 5 C 0.59 16.68 7.74 86.57 0.67 17.35 16 6 O -0.56 -18.60 13.79 -4.17 -0.06 -18.66 16 7 C -0.26 -6.45 6.32 -19.54 -0.12 -6.57 16 8 C 0.04 0.88 11.69 86.03 1.01 1.89 16 9 N -0.38 -9.19 11.98 -56.89 -0.68 -9.87 16 10 O 0.10 2.52 11.17 70.01 0.78 3.30 16 11 C 0.09 2.18 6.97 25.09 0.17 2.35 16 12 C -0.06 -1.45 5.42 -20.11 -0.11 -1.56 16 13 C -0.06 -1.34 7.91 22.55 0.18 -1.16 16 14 C -0.13 -2.31 10.03 22.23 0.22 -2.08 16 15 C -0.10 -1.37 10.04 22.34 0.22 -1.14 16 16 C -0.13 -1.92 10.03 22.23 0.22 -1.70 16 17 C -0.10 -1.82 9.79 22.55 0.22 -1.60 16 18 C -0.11 -3.58 3.47 -10.13 -0.04 -3.62 16 19 C 0.17 7.76 7.10 86.44 0.61 8.38 16 20 N -0.64 -32.71 3.70 -716.13 -2.65 -35.37 16 21 C -0.23 -13.15 10.69 84.03 0.90 -12.25 16 22 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 24 N -0.95 -57.98 11.42 21.65 0.25 -57.73 16 25 Si 0.98 45.83 29.56 68.60 2.03 47.86 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 C 0.13 4.91 7.64 86.48 0.66 5.57 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.60 7.52 -2.38 -0.02 1.58 16 33 H 0.41 8.22 7.86 -92.71 -0.73 7.49 16 34 H 0.23 3.21 7.77 -2.91 -0.02 3.18 16 35 H 0.12 2.74 7.52 -2.91 -0.02 2.72 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.00 0.11 7.99 -2.39 -0.02 0.09 16 42 H 0.04 2.13 7.18 -2.39 -0.02 2.12 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -74.54 382.33 3.76 -70.77 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.29 Total: 17.07 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.07 Total: 2.42 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -5.35 Total: -122.76 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.72 Total: -15.36 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.54 3.76 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970668156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.177 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds