Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47315 * 2 1 4 4 N 1.46501 * 109.47315 * 120.00073 * 2 1 3 5 5 C 1.34775 * 119.99677 * 275.00112 * 4 2 1 6 6 O 1.21601 * 120.00146 * 359.97438 * 5 4 2 7 7 C 1.47469 * 119.99620 * 180.02562 * 5 4 2 8 8 C 1.36229 * 126.36282 * 179.97438 * 7 5 4 9 9 O 1.34280 * 107.12036 * 179.75177 * 8 7 5 10 10 C 1.34475 * 108.17087 * 0.23031 * 9 8 7 11 11 C 1.47879 * 125.49284 * 179.97438 * 10 9 8 12 12 C 1.39542 * 120.14150 * 179.74494 * 11 10 9 13 13 C 1.37969 * 119.85160 * 179.74826 * 12 11 10 14 14 C 1.38357 * 120.14373 * 0.53510 * 13 12 11 15 15 C 1.38350 * 120.28386 * 359.74200 * 14 13 12 16 16 C 1.37964 * 120.14466 * 359.97438 * 15 14 13 17 17 N 1.30896 * 109.02188 * 359.97438 * 10 9 8 18 18 C 1.53003 * 109.47167 * 240.00009 * 2 1 3 19 19 C 1.53940 * 113.74288 * 158.73634 * 18 2 1 20 20 N 1.47816 * 86.04021 * 222.08395 * 19 18 2 21 21 C 1.36931 * 134.46075 * 204.64531 * 20 19 18 22 22 H 1.08000 * 120.00066 * 179.87106 * 21 20 19 23 23 C 1.38816 * 119.99692 * 359.86531 * 21 20 19 24 24 N 1.31615 * 120.00364 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47160 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46903 * 120.00546 * 25 23 21 28 28 H 1.48492 * 109.47469 * 240.00286 * 25 23 21 29 29 C 1.47588 * 91.04795 * 24.55257 * 20 19 18 30 30 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46736 * 299.99665 * 1 2 3 32 32 H 1.09001 * 109.47212 * 59.99781 * 1 2 3 33 33 H 0.97000 * 119.99965 * 95.00154 * 4 2 1 34 34 H 1.08002 * 126.44277 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.07373 * 0.02835 * 12 11 10 36 36 H 1.07995 * 119.93175 * 180.30335 * 13 12 11 37 37 H 1.07991 * 119.85560 * 179.76278 * 14 13 12 38 38 H 1.07998 * 119.92919 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.07491 * 180.02562 * 16 15 14 40 40 H 1.08993 * 112.94486 * 290.33577 * 18 2 1 41 41 H 1.08997 * 113.77478 * 336.35395 * 19 18 2 42 42 H 1.09001 * 113.76619 * 107.74882 * 19 18 2 43 43 H 0.96999 * 120.00070 * 179.97438 * 24 23 21 44 44 H 1.08996 * 113.76969 * 221.14923 * 29 20 19 45 45 H 1.09004 * 113.87223 * 89.76278 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1617 2.4116 7 6 2.6392 -0.7133 3.5610 8 6 2.8188 -0.1634 4.7944 9 8 3.2730 -1.1377 5.5992 10 6 3.3765 -2.2659 4.8747 11 6 3.8412 -3.5739 5.3844 12 6 3.9000 -4.6773 4.5322 13 6 4.3395 -5.8936 5.0128 14 6 4.7109 -6.0234 6.3392 15 6 4.6495 -4.9347 7.1907 16 6 4.2173 -3.7115 6.7212 17 7 2.9996 -2.0197 3.6456 18 6 2.0400 -0.7213 -1.2493 19 6 3.4847 -0.3520 -1.6318 20 7 2.9978 -0.3177 -3.0270 21 6 3.5873 -0.4757 -4.2527 22 1 2.9926 -0.4037 -5.1513 23 6 4.9495 -0.7283 -4.3403 24 7 5.6743 -0.8164 -3.2452 25 14 5.7536 -0.9446 -6.0124 26 1 4.7284 -0.8007 -7.0771 27 1 6.8039 0.0895 -6.1941 28 1 6.3681 -2.2939 -6.0955 29 6 1.6212 -0.0472 -2.5685 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 2.6274 0.8621 5.0737 35 1 3.6065 -4.5783 3.4976 36 1 4.3902 -6.7472 4.3531 37 1 5.0506 -6.9786 6.7114 38 1 4.9412 -5.0424 8.2249 39 1 4.1702 -2.8623 7.3868 40 1 1.8528 -1.7947 -1.2263 41 1 3.8047 0.6191 -1.2541 42 1 4.2070 -1.1447 -1.4368 43 1 6.6260 -0.9933 -3.3064 44 1 0.8585 -0.5968 -3.1200 45 1 1.3907 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970754440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 68.108952 kcal Electronic energy + Delta-G solvation = -28206.971076 eV Core-core repulsion = 24193.012158 eV Total energy + Delta-G solvation = -4013.958919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.60076 -39.67906 -39.36201 -37.99798 -35.12846 -34.77527 -32.73123 -32.13958 -31.36696 -30.42761 -29.30659 -27.49056 -25.22425 -24.45730 -24.15923 -23.67587 -22.79863 -21.57006 -20.98321 -20.29755 -19.30663 -18.27088 -17.16113 -17.04638 -16.74511 -16.44879 -16.14023 -15.82117 -15.20696 -14.87732 -14.71292 -14.38520 -14.02109 -13.88887 -13.82782 -13.67421 -13.42009 -13.29885 -13.04392 -12.41301 -12.13169 -11.88905 -11.65835 -11.57129 -11.52978 -11.31439 -11.26079 -11.02381 -10.89442 -10.70902 -10.33071 -10.14604 -10.09768 -9.80006 -9.72021 -9.38115 -9.38055 -8.83360 -8.77005 -8.59913 -6.83884 -5.73051 -3.05365 0.29120 0.98475 1.14023 2.06704 2.22648 3.13249 3.29515 3.40821 3.45858 3.47641 3.48658 3.57517 4.44061 4.47800 4.52752 4.60017 4.67654 4.74673 4.98846 5.08135 5.12755 5.18912 5.30655 5.32029 5.38930 5.46416 5.56432 5.61499 5.68054 5.71480 5.83548 5.98072 6.00737 6.03638 6.05944 6.09604 6.26393 6.38178 6.43241 6.47585 6.60776 6.68283 6.81588 7.19960 7.27990 7.40491 7.60459 7.70399 8.01604 8.28149 9.08032 9.74406 10.63947 11.43956 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.002503 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.871844 B =11181.847364 C =12958.834109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.696 5.696 5 C 0.601 3.399 6 O -0.541 6.541 7 C -0.060 4.060 8 C 0.013 3.987 9 O -0.192 6.192 10 C 0.236 3.764 11 C -0.019 4.019 12 C -0.068 4.068 13 C -0.120 4.120 14 C -0.101 4.101 15 C -0.123 4.123 16 C -0.089 4.089 17 N -0.444 5.444 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.221 4.221 22 H 0.080 0.920 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.131 3.869 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.408 0.592 34 H 0.234 0.766 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.252 0.748 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -8.034 23.675 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.345 5.345 5 C 0.385 3.615 6 O -0.418 6.418 7 C -0.182 4.182 8 C -0.061 4.061 9 O -0.078 6.078 10 C 0.031 3.969 11 C -0.021 4.021 12 C -0.087 4.087 13 C -0.138 4.138 14 C -0.119 4.119 15 C -0.141 4.141 16 C -0.109 4.109 17 N -0.173 5.173 18 C -0.167 4.167 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.250 0.750 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.995 -7.674 22.945 24.926 hybrid contribution 0.718 0.194 -0.384 0.837 sum -5.278 -7.480 22.561 24.348 Atomic orbital electron populations 1.22134 0.95479 1.01886 1.02153 1.21183 0.93614 0.97606 0.83104 0.89260 1.45913 1.65080 1.14619 1.08918 1.16705 0.77575 0.85525 0.81678 1.90811 1.51582 1.14710 1.84745 1.21915 1.09098 0.90729 0.96409 1.25377 0.97989 0.94114 0.88641 1.84414 1.64227 1.18368 1.40750 1.23757 1.00777 0.87447 0.84948 1.17285 1.03752 0.86753 0.94276 1.21274 0.96204 0.90957 1.00239 1.21176 0.99256 0.97450 0.95940 1.21403 0.97809 0.98968 0.93733 1.21077 1.00327 0.92399 1.00287 1.21239 0.97318 0.98461 0.93855 1.70973 1.14367 1.14395 1.17601 1.23827 1.00966 0.99751 0.92124 1.22292 0.91404 0.98512 0.83235 1.46007 1.03305 1.82578 1.02033 1.19068 0.91424 1.41452 0.82971 0.90223 1.24792 0.96077 1.02479 0.97246 1.69832 1.06006 1.55248 1.25672 0.86058 0.79304 0.77359 0.83113 1.20476 1.21794 1.21731 1.22489 0.89657 0.96610 0.90816 0.92637 0.92745 0.91249 0.75622 0.74996 0.84046 0.84864 0.85427 0.85212 0.85105 0.89301 0.95633 0.91001 0.93750 0.93732 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.31 37.16 0.35 -1.82 16 2 C 0.15 2.40 2.38 -67.93 -0.16 2.24 16 3 H 0.09 1.62 7.41 -51.93 -0.39 1.23 16 4 N -0.70 -10.64 5.07 -54.86 -0.28 -10.91 16 5 C 0.60 9.47 7.78 -12.50 -0.10 9.37 16 6 O -0.54 -9.67 16.55 5.28 0.09 -9.58 16 7 C -0.06 -0.83 6.99 -83.08 -0.58 -1.41 16 8 C 0.01 0.14 11.94 30.01 0.36 0.50 16 9 O -0.19 -2.11 10.45 5.30 0.06 -2.06 16 10 C 0.24 2.82 7.88 -14.01 -0.11 2.71 16 11 C -0.02 -0.19 5.87 -104.98 -0.62 -0.81 16 12 C -0.07 -0.63 9.68 -39.19 -0.38 -1.01 16 13 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 14 C -0.10 -0.63 10.04 -39.50 -0.40 -1.02 16 15 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 16 C -0.09 -0.71 9.71 -39.19 -0.38 -1.09 16 17 N -0.44 -6.02 10.65 -8.26 -0.09 -6.11 16 18 C -0.15 -2.71 3.47 -89.69 -0.31 -3.02 16 19 C 0.17 4.09 7.08 -2.84 -0.02 4.07 16 20 N -0.61 -16.02 3.70 -177.67 -0.66 -16.67 16 21 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -27.83 11.39 55.49 0.63 -27.19 16 25 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 C 0.13 2.67 7.64 -2.96 -0.02 2.64 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 33 H 0.41 5.88 8.33 -40.82 -0.34 5.54 16 34 H 0.23 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.14 1.35 7.82 -52.49 -0.41 0.94 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.87 7.89 -52.49 -0.41 0.45 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 42 H 0.07 1.91 7.16 -51.93 -0.37 1.53 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -34.51 387.88 -8.93 -43.44 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.08 Total: 3.73 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.43 Total: 2.05 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.39 Total: -60.89 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.14 Total: -11.63 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.51 -8.93 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970754440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.549 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds