Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47315 * 2 1 4 4 N 1.46501 * 109.47315 * 120.00073 * 2 1 3 5 5 C 1.34775 * 119.99677 * 275.00112 * 4 2 1 6 6 O 1.21601 * 120.00146 * 359.97438 * 5 4 2 7 7 C 1.47469 * 119.99620 * 180.02562 * 5 4 2 8 8 C 1.36229 * 126.36282 * 179.97438 * 7 5 4 9 9 O 1.34280 * 107.12036 * 179.75177 * 8 7 5 10 10 C 1.34475 * 108.17087 * 0.23031 * 9 8 7 11 11 C 1.47879 * 125.49284 * 179.97438 * 10 9 8 12 12 C 1.39542 * 120.14150 * 179.74494 * 11 10 9 13 13 C 1.37969 * 119.85160 * 179.74826 * 12 11 10 14 14 C 1.38357 * 120.14373 * 0.53510 * 13 12 11 15 15 C 1.38350 * 120.28386 * 359.74200 * 14 13 12 16 16 C 1.37964 * 120.14466 * 359.97438 * 15 14 13 17 17 N 1.30896 * 109.02188 * 359.97438 * 10 9 8 18 18 C 1.53003 * 109.47167 * 240.00009 * 2 1 3 19 19 C 1.53940 * 113.74288 * 158.73634 * 18 2 1 20 20 N 1.47816 * 86.04021 * 222.08395 * 19 18 2 21 21 C 1.36931 * 134.46075 * 204.64531 * 20 19 18 22 22 H 1.08000 * 120.00066 * 179.87106 * 21 20 19 23 23 C 1.38816 * 119.99692 * 359.86531 * 21 20 19 24 24 N 1.31615 * 120.00364 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47160 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46903 * 120.00546 * 25 23 21 28 28 H 1.48492 * 109.47469 * 240.00286 * 25 23 21 29 29 C 1.47588 * 91.04795 * 24.55257 * 20 19 18 30 30 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46736 * 299.99665 * 1 2 3 32 32 H 1.09001 * 109.47212 * 59.99781 * 1 2 3 33 33 H 0.97000 * 119.99965 * 95.00154 * 4 2 1 34 34 H 1.08002 * 126.44277 * 0.02562 * 8 7 5 35 35 H 1.08001 * 120.07373 * 0.02835 * 12 11 10 36 36 H 1.07995 * 119.93175 * 180.30335 * 13 12 11 37 37 H 1.07991 * 119.85560 * 179.76278 * 14 13 12 38 38 H 1.07998 * 119.92919 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.07491 * 180.02562 * 16 15 14 40 40 H 1.08993 * 112.94486 * 290.33577 * 18 2 1 41 41 H 1.08997 * 113.77478 * 336.35395 * 19 18 2 42 42 H 1.09001 * 113.76619 * 107.74882 * 19 18 2 43 43 H 0.96999 * 120.00070 * 179.97438 * 24 23 21 44 44 H 1.08996 * 113.76969 * 221.14923 * 29 20 19 45 45 H 1.09004 * 113.87223 * 89.76278 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1617 2.4116 7 6 2.6392 -0.7133 3.5610 8 6 2.8188 -0.1634 4.7944 9 8 3.2730 -1.1377 5.5992 10 6 3.3765 -2.2659 4.8747 11 6 3.8412 -3.5739 5.3844 12 6 3.9000 -4.6773 4.5322 13 6 4.3395 -5.8936 5.0128 14 6 4.7109 -6.0234 6.3392 15 6 4.6495 -4.9347 7.1907 16 6 4.2173 -3.7115 6.7212 17 7 2.9996 -2.0197 3.6456 18 6 2.0400 -0.7213 -1.2493 19 6 3.4847 -0.3520 -1.6318 20 7 2.9978 -0.3177 -3.0270 21 6 3.5873 -0.4757 -4.2527 22 1 2.9926 -0.4037 -5.1513 23 6 4.9495 -0.7283 -4.3403 24 7 5.6743 -0.8164 -3.2452 25 14 5.7536 -0.9446 -6.0124 26 1 4.7284 -0.8007 -7.0771 27 1 6.8039 0.0895 -6.1941 28 1 6.3681 -2.2939 -6.0955 29 6 1.6212 -0.0472 -2.5685 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 2.6274 0.8621 5.0737 35 1 3.6065 -4.5783 3.4976 36 1 4.3902 -6.7472 4.3531 37 1 5.0506 -6.9786 6.7114 38 1 4.9412 -5.0424 8.2249 39 1 4.1702 -2.8623 7.3868 40 1 1.8528 -1.7947 -1.2263 41 1 3.8047 0.6191 -1.2541 42 1 4.2070 -1.1447 -1.4368 43 1 6.6260 -0.9933 -3.3064 44 1 0.8585 -0.5968 -3.1200 45 1 1.3907 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970754440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 44.197872 kcal Electronic energy + Delta-G solvation = -28208.007939 eV Core-core repulsion = 24193.012158 eV Total energy + Delta-G solvation = -4014.995781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.51752 -41.00889 -39.96649 -39.63077 -36.27656 -36.04649 -34.17841 -33.44233 -31.96585 -31.75999 -30.17033 -29.36864 -26.77386 -25.90213 -25.30216 -24.83845 -23.59218 -22.69585 -22.06325 -21.52079 -20.75868 -19.36456 -18.76248 -18.00974 -17.96882 -17.45726 -17.30655 -16.92527 -16.54040 -16.00025 -15.90595 -15.76219 -15.51282 -14.90954 -14.73002 -14.66844 -14.62623 -14.37320 -14.09075 -13.91094 -13.47480 -13.29005 -13.11013 -12.93256 -12.73755 -12.58881 -12.52073 -12.41550 -12.14191 -11.99919 -11.89281 -11.76749 -11.56534 -11.35333 -11.16797 -10.89218 -10.88959 -10.12498 -9.94707 -9.38894 -8.93681 -7.91254 -5.25400 -0.43060 0.19666 0.42340 1.20378 1.37111 1.43978 1.45610 1.55944 1.98181 2.18503 2.46281 2.65743 2.84598 3.29041 3.35406 3.57127 3.66284 3.76351 3.91574 3.99179 4.02627 4.19879 4.27104 4.35659 4.44527 4.45259 4.47929 4.56437 4.61629 4.72493 4.74105 4.80996 4.84474 4.93712 4.99492 5.06409 5.09180 5.24097 5.31763 5.37369 5.42214 5.47718 5.52994 5.54235 5.63208 5.91790 5.94527 6.21714 6.51716 6.90055 7.04761 7.59751 8.55480 9.25755 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.002503 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.871844 B =11181.847364 C =12958.834109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.068 0.932 4 N -0.696 5.696 5 C 0.601 3.399 6 O -0.567 6.567 7 C -0.094 4.094 8 C 0.035 3.965 9 O -0.186 6.186 10 C 0.238 3.762 11 C -0.047 4.047 12 C -0.085 4.085 13 C -0.126 4.126 14 C -0.094 4.094 15 C -0.121 4.121 16 C -0.092 4.092 17 N -0.469 5.469 18 C -0.112 4.112 19 C 0.168 3.832 20 N -0.645 5.645 21 C -0.233 4.233 22 H 0.087 0.913 23 C -0.072 4.072 24 N -0.956 5.956 25 Si 0.981 3.019 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.290 1.290 29 C 0.133 3.867 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.412 0.588 34 H 0.265 0.735 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.004 0.996 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.067 0.933 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 -9.241 24.968 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.086 0.914 4 N -0.345 5.345 5 C 0.387 3.613 6 O -0.447 6.447 7 C -0.214 4.214 8 C -0.039 4.039 9 O -0.072 6.072 10 C 0.032 3.968 11 C -0.048 4.048 12 C -0.105 4.105 13 C -0.144 4.144 14 C -0.112 4.112 15 C -0.138 4.138 16 C -0.111 4.111 17 N -0.198 5.198 18 C -0.131 4.131 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.361 4.361 22 H 0.105 0.895 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.809 3.191 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.217 1.217 29 C 0.008 3.992 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.248 0.752 34 H 0.280 0.720 35 H 0.145 0.855 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.118 0.882 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.940 -8.888 24.233 26.728 hybrid contribution 1.016 0.518 -0.685 1.330 sum -5.924 -8.370 23.548 25.684 Atomic orbital electron populations 1.22053 0.92834 1.03099 1.02702 1.20978 0.95439 0.95956 0.82296 0.91395 1.45872 1.65135 1.14741 1.08753 1.16912 0.76952 0.85251 0.82156 1.90782 1.52896 1.15697 1.85282 1.21754 1.11647 0.91372 0.96668 1.25940 0.95479 0.94910 0.87597 1.84445 1.64061 1.18213 1.40456 1.24211 0.99819 0.88185 0.84592 1.17482 1.05744 0.86043 0.95535 1.21315 0.97379 0.91950 0.99808 1.21436 0.98812 0.97071 0.97032 1.21808 0.96157 1.00236 0.93027 1.21465 0.99071 0.91574 1.01723 1.21458 0.96940 0.99738 0.93006 1.70919 1.15658 1.14500 1.18746 1.23452 0.96396 1.00433 0.92853 1.22154 0.93942 0.96371 0.83309 1.46438 1.05927 1.82868 1.01902 1.19507 0.91926 1.40306 0.84377 0.89533 1.25694 0.96848 1.03035 1.00923 1.70041 1.05778 1.56812 1.27845 0.84975 0.78210 0.76760 0.79175 1.18656 1.22198 1.21738 1.22678 0.87594 0.97706 0.91204 0.91073 0.92789 0.90098 0.75188 0.71971 0.85473 0.83226 0.82460 0.82281 0.84029 0.88155 0.97771 0.94393 0.94419 0.91513 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.31 71.98 0.67 -3.14 16 2 C 0.16 5.06 2.38 44.99 0.11 5.16 16 3 H 0.07 2.50 7.41 -2.39 -0.02 2.49 16 4 N -0.70 -21.65 5.07 -445.75 -2.26 -23.92 16 5 C 0.60 19.34 7.78 86.68 0.67 20.02 16 6 O -0.57 -20.52 16.55 -4.03 -0.07 -20.58 16 7 C -0.09 -2.64 6.99 40.50 0.28 -2.36 16 8 C 0.03 0.75 11.94 67.35 0.80 1.55 16 9 O -0.19 -3.99 10.45 -3.94 -0.04 -4.03 16 10 C 0.24 5.75 7.88 87.39 0.69 6.44 16 11 C -0.05 -0.93 5.87 -20.09 -0.12 -1.05 16 12 C -0.09 -1.61 9.68 22.52 0.22 -1.39 16 13 C -0.13 -1.68 10.03 22.23 0.22 -1.45 16 14 C -0.09 -0.91 10.04 22.32 0.22 -0.69 16 15 C -0.12 -1.21 10.03 22.23 0.22 -0.98 16 16 C -0.09 -1.33 9.71 22.52 0.22 -1.11 16 17 N -0.47 -13.16 10.65 -294.25 -3.13 -16.29 16 18 C -0.11 -4.11 3.47 -10.13 -0.04 -4.15 16 19 C 0.17 8.36 7.08 86.44 0.61 8.98 16 20 N -0.64 -34.08 3.70 -716.01 -2.65 -36.74 16 21 C -0.23 -13.40 10.70 84.04 0.90 -12.50 16 22 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 23 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.96 -59.81 11.39 21.65 0.25 -59.56 16 25 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 26 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 C 0.13 5.29 7.64 86.49 0.66 5.95 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.89 7.52 -2.39 -0.02 1.88 16 33 H 0.41 12.21 8.33 -92.71 -0.77 11.44 16 34 H 0.26 3.69 8.06 -2.91 -0.02 3.66 16 35 H 0.13 2.65 7.82 -2.91 -0.02 2.63 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.16 0.59 8.06 -2.92 -0.02 0.57 16 38 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.14 1.64 7.89 -2.91 -0.02 1.62 16 40 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.00 0.24 7.99 -2.39 -0.02 0.22 16 42 H 0.04 2.12 7.16 -2.39 -0.02 2.11 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 Total: -1.00 -77.24 387.88 1.19 -76.06 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.25 Total: 20.67 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.82 Total: 15.48 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -7.80 Total: -136.50 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.11 Total: -24.61 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -77.24 1.19 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970754440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.254 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds