Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47078 * 226.59808 * 3 2 1 5 5 C 1.35427 * 116.99942 * 179.97438 * 4 3 2 6 6 N 1.32237 * 119.80255 * 0.27374 * 5 4 3 7 7 C 1.31884 * 121.80088 * 180.26672 * 6 5 4 8 8 C 1.38361 * 121.18508 * 359.74422 * 7 6 5 9 9 C 1.38335 * 119.45559 * 359.97438 * 8 7 6 10 10 C 1.39988 * 118.35240 * 359.97438 * 9 8 7 11 11 C 1.47526 * 120.59525 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99855 * 179.97438 * 11 10 9 13 13 N 1.34776 * 120.00244 * 0.02562 * 11 10 9 14 14 C 1.46495 * 119.99851 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46690 * 179.97438 * 14 13 11 16 16 H 1.08990 * 115.51837 * 330.41150 * 15 14 13 17 17 C 1.53005 * 117.43952 * 184.99918 * 15 14 13 18 18 H 1.08998 * 119.54101 * 4.11146 * 17 15 14 19 19 C 1.54390 * 118.11915 * 160.81200 * 17 15 14 20 20 N 1.48146 * 104.62111 * 87.19223 * 19 17 15 21 21 C 1.36937 * 127.83961 * 140.39311 * 20 19 17 22 22 H 1.08003 * 119.99660 * 195.59555 * 21 20 19 23 23 C 1.38810 * 119.99994 * 15.58999 * 21 20 19 24 24 N 1.31620 * 119.99862 * 9.10173 * 23 21 20 25 25 Si 1.86797 * 119.99935 * 189.09597 * 23 21 20 26 26 H 1.48499 * 109.47144 * 90.00302 * 25 23 21 27 27 H 1.48496 * 109.47335 * 210.00524 * 25 23 21 28 28 H 1.48506 * 109.47004 * 330.00050 * 25 23 21 29 29 C 1.48148 * 104.31780 * 320.41002 * 20 19 17 30 30 C 1.53000 * 117.44368 * 115.76091 * 15 14 13 31 31 H 1.09010 * 119.53855 * 355.87528 * 30 15 14 32 32 H 4.38446 * 5.44443 * 179.97438 * 4 1 2 33 33 H 1.09004 * 109.47284 * 106.60118 * 3 2 1 34 34 H 1.09001 * 109.47350 * 346.60405 * 3 2 1 35 35 H 1.07995 * 119.40469 * 179.71926 * 7 6 5 36 36 H 1.07998 * 120.26833 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.82266 * 180.02562 * 9 8 7 38 38 H 0.96996 * 119.99771 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.47388 * 59.99662 * 14 13 11 40 40 H 1.08999 * 109.47208 * 299.99344 * 14 13 11 41 41 H 1.09001 * 110.40401 * 205.97253 * 19 17 15 42 42 H 1.08997 * 110.40762 * 328.39652 * 19 17 15 43 43 H 0.96999 * 119.99692 * 180.02562 * 24 23 21 44 44 H 1.09000 * 110.41069 * 280.80205 * 29 20 19 45 45 H 1.09007 * 110.50213 * 158.42533 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 0.9266 0.9788 5 6 4.4644 1.0487 1.1081 6 7 5.2666 0.3302 0.3408 7 6 6.5793 0.4141 0.4369 8 6 7.1779 1.2669 1.3472 9 6 6.3863 2.0465 2.1714 10 6 4.9956 1.9414 2.0508 11 6 4.1047 2.7501 2.9046 12 8 2.8983 2.6506 2.7904 13 7 4.6280 3.5998 3.8104 14 6 3.7433 4.4032 4.6577 15 6 4.5851 5.2758 5.5909 16 1 5.5553 4.8650 5.8698 17 6 3.8429 6.1059 6.6403 18 1 2.7622 6.0044 6.7397 19 6 4.6414 6.6254 7.8552 20 7 5.2113 7.9162 7.4038 21 6 5.3346 9.0765 8.1206 22 1 5.5316 10.0079 7.6106 23 6 5.2063 9.0555 9.5026 24 7 5.1457 7.9058 10.1405 25 14 5.1199 10.6589 10.4571 26 1 3.7029 11.0856 10.5807 27 1 5.6971 10.4609 11.8108 28 1 5.8910 11.7049 9.7384 29 6 5.6170 7.6671 6.0010 30 6 4.4862 6.7928 5.4177 31 1 3.8847 7.2030 4.6063 32 1 -1.0502 -0.0001 -0.0004 33 1 3.0092 0.2944 -0.9848 34 1 3.0098 -0.9989 0.2381 35 1 7.1980 -0.1941 -0.2062 36 1 8.2544 1.3235 1.4137 37 1 6.8303 2.7200 2.8896 38 1 5.5905 3.6794 3.9012 39 1 3.1103 3.7431 5.2508 40 1 3.1184 5.0390 4.0306 41 1 3.9795 6.7794 8.7073 42 1 5.4380 5.9275 8.1129 43 1 5.0557 7.8911 11.1062 44 1 6.5661 7.1320 5.9690 45 1 5.6926 8.6063 5.4528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978974510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 90.973728 kcal Electronic energy + Delta-G solvation = -27799.848376 eV Core-core repulsion = 23786.880949 eV Total energy + Delta-G solvation = -4012.967428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.27142 -39.47320 -38.63155 -38.39006 -34.99415 -33.75352 -33.57279 -32.85758 -31.14876 -30.73343 -27.97031 -27.34934 -27.11896 -25.30525 -24.34773 -23.31393 -21.20108 -20.97916 -19.96010 -19.26687 -19.04067 -18.81122 -17.75741 -17.19612 -16.82230 -16.64883 -15.78756 -15.48744 -15.23777 -14.96673 -14.75951 -14.53335 -14.22147 -14.11189 -13.62504 -13.39679 -13.28501 -13.03153 -12.75206 -12.66265 -12.61164 -12.14604 -11.84612 -11.27157 -11.11431 -11.04438 -10.85327 -10.66035 -10.49113 -10.40340 -10.38875 -10.31092 -10.13926 -9.88478 -9.75014 -9.41471 -9.14258 -9.02400 -8.84541 -8.64701 -6.88416 -5.81236 -3.15664 0.29784 0.80962 1.89718 2.47433 2.71551 2.97876 3.17202 3.37464 3.42734 3.44505 3.49625 3.81778 4.02457 4.12984 4.32167 4.40596 4.45281 4.57813 4.76541 4.88322 4.97738 4.99332 5.04292 5.29317 5.37169 5.38592 5.43976 5.50606 5.54169 5.60737 5.79147 5.87139 5.89959 5.91902 5.97122 6.21993 6.34912 6.54935 6.64765 6.69633 6.82370 6.90639 7.22496 7.27671 7.34343 7.45921 7.51869 7.70559 8.16550 8.19630 9.09641 9.72390 10.49343 11.33048 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.001892 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.839010 B =14792.920993 C =15811.896394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.201 4.201 3 C 0.180 3.820 4 O -0.264 6.264 5 C 0.374 3.626 6 N -0.547 5.547 7 C 0.166 3.834 8 C -0.218 4.218 9 C -0.007 4.007 10 C -0.204 4.204 11 C 0.559 3.441 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.157 3.843 15 C -0.150 4.150 16 H 0.102 0.898 17 C -0.161 4.161 18 H 0.103 0.897 19 C 0.184 3.816 20 N -0.594 5.594 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.154 3.846 30 C -0.172 4.172 31 H 0.103 0.897 32 H 0.225 0.775 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.398 0.602 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.023 0.977 43 H 0.254 0.746 44 H 0.023 0.977 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -17.982 -21.214 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.201 4.201 3 C 0.105 3.895 4 O -0.169 6.169 5 C 0.194 3.806 6 N -0.272 5.272 7 C 0.009 3.991 8 C -0.238 4.238 9 C -0.033 4.033 10 C -0.210 4.210 11 C 0.345 3.655 12 O -0.392 6.392 13 N -0.374 5.374 14 C 0.034 3.966 15 C -0.169 4.169 16 H 0.120 0.880 17 C -0.182 4.182 18 H 0.122 0.878 19 C 0.058 3.942 20 N -0.318 5.318 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 C 0.028 3.972 30 C -0.192 4.192 31 H 0.121 0.879 32 H 0.241 0.759 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.183 -18.328 -21.477 28.235 hybrid contribution 0.723 1.207 0.980 1.715 sum 0.907 -17.121 -20.497 26.722 Atomic orbital electron populations 1.25007 0.95854 0.98395 0.98170 1.22277 0.93586 1.02061 1.02165 1.19142 0.84469 0.93527 0.92345 1.86575 1.15986 1.58735 1.55555 1.19743 0.84121 0.88388 0.88380 1.67486 1.06798 1.26183 1.26710 1.22680 0.89023 0.93459 0.93953 1.21970 1.01933 1.00363 0.99527 1.21717 0.91071 0.94938 0.95548 1.20066 0.94315 1.03898 1.02750 1.17752 0.87793 0.79833 0.80123 1.90860 1.14143 1.66048 1.68175 1.45898 1.10565 1.42494 1.38395 1.20881 0.91658 0.92716 0.91378 1.22525 1.00801 0.92353 1.01231 0.87952 1.24240 0.99056 1.01171 0.93691 0.87847 1.21066 0.94684 0.85914 0.92531 1.45209 1.69010 1.09438 1.08138 1.19002 1.43306 0.84837 0.88364 0.90571 1.24903 1.02040 0.97130 0.96263 1.69897 1.55450 1.23182 1.07653 0.86103 0.77773 0.82486 0.79300 1.21481 1.21658 1.20549 1.21132 0.92898 0.95803 0.87371 1.24005 1.03027 0.91566 1.00571 0.87901 0.75879 0.89059 0.89067 0.81668 0.83614 0.83468 0.76664 0.90966 0.91283 0.89173 0.95861 0.93548 0.95885 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 19.25 29.55 0.57 -0.90 16 2 C -0.20 -2.22 13.73 -37.13 -0.51 -2.73 16 3 C 0.18 1.84 5.78 34.37 0.20 2.04 16 4 O -0.26 -3.57 8.17 -39.74 -0.32 -3.89 16 5 C 0.37 4.43 7.51 -16.61 -0.12 4.30 16 6 N -0.55 -5.21 9.21 -12.98 -0.12 -5.33 16 7 C 0.17 1.06 11.17 -17.48 -0.20 0.87 16 8 C -0.22 -1.24 10.09 -39.50 -0.40 -1.64 16 9 C -0.01 -0.05 9.64 -38.89 -0.37 -0.43 16 10 C -0.20 -2.29 5.90 -104.69 -0.62 -2.91 16 11 C 0.56 7.70 7.77 -12.47 -0.10 7.60 16 12 O -0.52 -9.16 15.19 -16.49 -0.25 -9.41 16 13 N -0.72 -8.51 5.51 -61.35 -0.34 -8.85 16 14 C 0.16 2.14 5.95 -4.04 -0.02 2.11 16 15 C -0.15 -2.25 5.39 -90.61 -0.49 -2.73 16 16 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 17 C -0.16 -3.00 6.85 -89.22 -0.61 -3.62 16 18 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 19 C 0.18 4.35 5.70 -2.41 -0.01 4.34 16 20 N -0.59 -15.08 3.38 -168.86 -0.57 -15.65 16 21 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 22 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 23 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 24 N -0.92 -26.64 10.86 55.49 0.60 -26.04 16 25 Si 0.91 21.84 29.56 -169.99 -5.03 16.82 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 30 C -0.17 -2.98 6.74 -89.22 -0.60 -3.58 16 31 H 0.10 1.67 8.12 -51.92 -0.42 1.24 16 32 H 0.22 1.19 7.80 -54.08 -0.42 0.77 16 33 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 36 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.15 0.73 6.52 -52.49 -0.34 0.38 16 38 H 0.40 3.58 6.50 -40.82 -0.27 3.31 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.00 7.94 -51.93 -0.41 0.58 16 41 H 0.09 2.40 6.51 -51.93 -0.34 2.07 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -35.35 388.10 -9.70 -45.05 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.97 Total: 2.29 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.56 Total: -0.83 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.43 Total: -55.87 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.58 Total: -13.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.35 -9.70 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978974510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.025 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds