Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42896 * 109.47078 * 226.59808 * 3 2 1 5 5 C 1.35427 * 116.99942 * 179.97438 * 4 3 2 6 6 N 1.32237 * 119.80255 * 0.27374 * 5 4 3 7 7 C 1.31884 * 121.80088 * 180.26672 * 6 5 4 8 8 C 1.38361 * 121.18508 * 359.74422 * 7 6 5 9 9 C 1.38335 * 119.45559 * 359.97438 * 8 7 6 10 10 C 1.39988 * 118.35240 * 359.97438 * 9 8 7 11 11 C 1.47526 * 120.59525 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99855 * 179.97438 * 11 10 9 13 13 N 1.34776 * 120.00244 * 0.02562 * 11 10 9 14 14 C 1.46495 * 119.99851 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46690 * 179.97438 * 14 13 11 16 16 H 1.08990 * 115.51837 * 330.41150 * 15 14 13 17 17 C 1.53005 * 117.43952 * 184.99918 * 15 14 13 18 18 H 1.08998 * 119.54101 * 4.11146 * 17 15 14 19 19 C 1.54390 * 118.11915 * 160.81200 * 17 15 14 20 20 N 1.48146 * 104.62111 * 87.19223 * 19 17 15 21 21 C 1.36937 * 127.83961 * 140.39311 * 20 19 17 22 22 H 1.08003 * 119.99660 * 195.59555 * 21 20 19 23 23 C 1.38810 * 119.99994 * 15.58999 * 21 20 19 24 24 N 1.31620 * 119.99862 * 9.10173 * 23 21 20 25 25 Si 1.86797 * 119.99935 * 189.09597 * 23 21 20 26 26 H 1.48499 * 109.47144 * 90.00302 * 25 23 21 27 27 H 1.48496 * 109.47335 * 210.00524 * 25 23 21 28 28 H 1.48506 * 109.47004 * 330.00050 * 25 23 21 29 29 C 1.48148 * 104.31780 * 320.41002 * 20 19 17 30 30 C 1.53000 * 117.44368 * 115.76091 * 15 14 13 31 31 H 1.09010 * 119.53855 * 355.87528 * 30 15 14 32 32 H 4.38446 * 5.44443 * 179.97438 * 4 1 2 33 33 H 1.09004 * 109.47284 * 106.60118 * 3 2 1 34 34 H 1.09001 * 109.47350 * 346.60405 * 3 2 1 35 35 H 1.07995 * 119.40469 * 179.71926 * 7 6 5 36 36 H 1.07998 * 120.26833 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.82266 * 180.02562 * 9 8 7 38 38 H 0.96996 * 119.99771 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.47388 * 59.99662 * 14 13 11 40 40 H 1.08999 * 109.47208 * 299.99344 * 14 13 11 41 41 H 1.09001 * 110.40401 * 205.97253 * 19 17 15 42 42 H 1.08997 * 110.40762 * 328.39652 * 19 17 15 43 43 H 0.96999 * 119.99692 * 180.02562 * 24 23 21 44 44 H 1.09000 * 110.41069 * 280.80205 * 29 20 19 45 45 H 1.09007 * 110.50213 * 158.42533 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 0.9266 0.9788 5 6 4.4644 1.0487 1.1081 6 7 5.2666 0.3302 0.3408 7 6 6.5793 0.4141 0.4369 8 6 7.1779 1.2669 1.3472 9 6 6.3863 2.0465 2.1714 10 6 4.9956 1.9414 2.0508 11 6 4.1047 2.7501 2.9046 12 8 2.8983 2.6506 2.7904 13 7 4.6280 3.5998 3.8104 14 6 3.7433 4.4032 4.6577 15 6 4.5851 5.2758 5.5909 16 1 5.5553 4.8650 5.8698 17 6 3.8429 6.1059 6.6403 18 1 2.7622 6.0044 6.7397 19 6 4.6414 6.6254 7.8552 20 7 5.2113 7.9162 7.4038 21 6 5.3346 9.0765 8.1206 22 1 5.5316 10.0079 7.6106 23 6 5.2063 9.0555 9.5026 24 7 5.1457 7.9058 10.1405 25 14 5.1199 10.6589 10.4571 26 1 3.7029 11.0856 10.5807 27 1 5.6971 10.4609 11.8108 28 1 5.8910 11.7049 9.7384 29 6 5.6170 7.6671 6.0010 30 6 4.4862 6.7928 5.4177 31 1 3.8847 7.2030 4.6063 32 1 -1.0502 -0.0001 -0.0004 33 1 3.0092 0.2944 -0.9848 34 1 3.0098 -0.9989 0.2381 35 1 7.1980 -0.1941 -0.2062 36 1 8.2544 1.3235 1.4137 37 1 6.8303 2.7200 2.8896 38 1 5.5905 3.6794 3.9012 39 1 3.1103 3.7431 5.2508 40 1 3.1184 5.0390 4.0306 41 1 3.9795 6.7794 8.7073 42 1 5.4380 5.9275 8.1129 43 1 5.0557 7.8911 11.1062 44 1 6.5661 7.1320 5.9690 45 1 5.6926 8.6063 5.4528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978974510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 67.533037 kcal Electronic energy + Delta-G solvation = -27800.864841 eV Core-core repulsion = 23786.880949 eV Total energy + Delta-G solvation = -4013.983892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.99726 -40.70083 -39.93329 -39.12465 -36.35287 -35.08698 -34.47034 -33.76251 -32.61210 -31.70099 -29.10046 -28.83650 -28.40492 -26.80857 -25.27199 -24.01870 -22.87099 -22.03855 -21.29950 -20.83314 -19.75455 -19.54357 -18.85786 -18.59970 -17.91618 -17.42187 -16.93768 -16.62065 -16.28856 -16.17801 -15.90016 -15.49625 -15.43607 -15.18734 -14.81922 -14.63389 -14.52790 -14.11501 -14.03972 -13.87346 -13.35267 -13.27921 -13.17606 -12.87929 -12.86371 -12.73335 -12.30497 -11.97619 -11.93317 -11.79556 -11.76177 -11.29456 -11.21665 -11.04599 -10.94915 -10.71512 -10.69479 -10.50108 -10.09651 -9.56656 -8.90046 -7.91459 -5.27497 -0.35550 0.22520 1.16993 1.46381 1.48473 1.56993 1.71698 1.85059 2.00098 2.45621 2.47766 2.72710 2.79998 3.21521 3.26920 3.37174 3.61430 3.66863 3.72988 3.82984 3.85557 3.99204 4.15160 4.20726 4.27759 4.28231 4.32330 4.42871 4.49818 4.57747 4.66200 4.74549 4.85984 4.93331 4.95265 5.03792 5.09869 5.19709 5.35146 5.40309 5.44357 5.46014 5.54084 5.67222 6.12794 6.18726 6.48828 6.49925 6.71974 7.01686 7.19954 7.69031 8.47190 9.22219 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.001892 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.839010 B =14792.920993 C =15811.896394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.249 4.249 3 C 0.179 3.821 4 O -0.297 6.297 5 C 0.350 3.650 6 N -0.559 5.559 7 C 0.166 3.834 8 C -0.203 4.203 9 C -0.002 4.002 10 C -0.232 4.232 11 C 0.558 3.442 12 O -0.566 6.566 13 N -0.708 5.708 14 C 0.165 3.835 15 C -0.106 4.106 16 H 0.115 0.885 17 C -0.178 4.178 18 H 0.110 0.890 19 C 0.190 3.810 20 N -0.621 5.621 21 C -0.239 4.239 22 H 0.081 0.919 23 C -0.064 4.064 24 N -0.947 5.947 25 Si 0.979 3.021 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.266 1.266 29 C 0.150 3.850 30 C -0.160 4.160 31 H 0.122 0.878 32 H 0.258 0.742 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.204 0.796 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.414 0.586 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.005 0.995 43 H 0.249 0.751 44 H 0.032 0.968 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -18.380 -23.126 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.249 4.249 3 C 0.106 3.894 4 O -0.203 6.203 5 C 0.171 3.829 6 N -0.284 5.284 7 C 0.009 3.991 8 C -0.222 4.222 9 C -0.028 4.028 10 C -0.238 4.238 11 C 0.346 3.654 12 O -0.446 6.446 13 N -0.361 5.361 14 C 0.042 3.958 15 C -0.125 4.125 16 H 0.133 0.867 17 C -0.199 4.199 18 H 0.128 0.872 19 C 0.064 3.936 20 N -0.345 5.345 21 C -0.368 4.368 22 H 0.098 0.902 23 C -0.258 4.258 24 N -0.595 5.595 25 Si 0.807 3.193 26 H -0.214 1.214 27 H -0.220 1.220 28 H -0.191 1.191 29 C 0.025 3.975 30 C -0.180 4.180 31 H 0.139 0.861 32 H 0.274 0.726 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.221 0.779 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.023 0.977 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.057 -18.724 -23.424 30.059 hybrid contribution 0.257 1.263 1.491 1.971 sum 2.314 -17.461 -21.933 28.130 Atomic orbital electron populations 1.25929 0.96795 0.96775 0.96543 1.22886 0.94659 1.03648 1.03754 1.19239 0.84377 0.93546 0.92288 1.86518 1.17489 1.59707 1.56584 1.19973 0.83897 0.89541 0.89510 1.67541 1.08137 1.26115 1.26571 1.23475 0.88196 0.93315 0.94070 1.22430 1.03663 0.98428 0.97684 1.22079 0.89428 0.95250 0.96045 1.20006 0.95572 1.04798 1.03410 1.18178 0.87548 0.79625 0.80040 1.90828 1.16377 1.67682 1.69721 1.45695 1.11194 1.41701 1.37559 1.20653 0.91520 0.92474 0.91182 1.22393 1.00526 0.91141 0.98476 0.86729 1.23928 0.99144 1.04468 0.92317 0.87185 1.20790 0.93818 0.85515 0.93467 1.45530 1.69798 1.09231 1.09982 1.19378 1.42409 0.86035 0.88983 0.90168 1.25738 1.02495 1.00259 0.97291 1.70090 1.56859 1.25152 1.07381 0.85069 0.77610 0.79022 0.77572 1.21416 1.22035 1.19098 1.21293 0.94182 0.96963 0.85108 1.23935 1.01540 0.92652 0.99866 0.86060 0.72590 0.88278 0.88298 0.77924 0.79692 0.80884 0.74766 0.91519 0.91633 0.93059 0.97688 0.94154 0.95022 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.25 -5.72 13.73 31.12 0.43 -5.29 16 3 C 0.18 3.88 5.78 70.17 0.41 4.28 16 4 O -0.30 -8.44 8.17 -66.41 -0.54 -8.98 16 5 C 0.35 8.28 7.51 85.13 0.64 8.92 16 6 N -0.56 -9.93 9.21 -307.99 -2.84 -12.76 16 7 C 0.17 1.57 11.17 84.71 0.95 2.52 16 8 C -0.20 -1.44 10.09 22.32 0.23 -1.21 16 9 C 0.00 -0.03 9.64 22.72 0.22 0.19 16 10 C -0.23 -4.98 5.90 -19.91 -0.12 -5.09 16 11 C 0.56 15.17 7.77 86.69 0.67 15.84 16 12 O -0.57 -20.70 15.19 16.81 0.26 -20.44 16 13 N -0.71 -15.46 5.51 -466.29 -2.57 -18.03 16 14 C 0.17 4.25 5.95 86.38 0.51 4.77 16 15 C -0.11 -2.97 5.39 -10.79 -0.06 -3.03 16 16 H 0.11 3.01 8.04 -2.39 -0.02 2.99 16 17 C -0.18 -6.56 6.85 -9.88 -0.07 -6.63 16 18 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 19 C 0.19 9.21 5.70 86.53 0.49 9.71 16 20 N -0.62 -31.76 3.38 -688.15 -2.33 -34.08 16 21 C -0.24 -13.36 10.35 84.03 0.87 -12.49 16 22 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 23 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 24 N -0.95 -56.82 10.86 21.65 0.24 -56.58 16 25 Si 0.98 45.46 29.56 68.60 2.03 47.49 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 C 0.15 5.93 7.04 86.53 0.61 6.54 16 30 C -0.16 -5.24 6.74 -9.89 -0.07 -5.31 16 31 H 0.12 3.59 8.12 -2.38 -0.02 3.57 16 32 H 0.26 2.34 7.80 -4.41 -0.03 2.31 16 33 H 0.10 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.10 1.82 8.11 -2.39 -0.02 1.80 16 35 H 0.20 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 37 H 0.17 0.98 6.52 -2.91 -0.02 0.96 16 38 H 0.41 6.19 6.50 -92.71 -0.60 5.59 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.79 7.94 -2.39 -0.02 1.77 16 41 H 0.05 2.86 6.51 -2.39 -0.02 2.85 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 43 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -81.71 388.10 2.26 -79.44 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.42 Total: 14.65 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 7.60 Total: 9.30 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -7.49 Total: -121.45 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.29 Total: -29.43 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -81.71 2.26 -79.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978974510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.977 kcal (2) G-P(sol) polarization free energy of solvation -81.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds