Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87063 * 2 1 4 4 C 1.54324 * 109.87664 * 238.98919 * 2 1 3 5 5 H 1.08997 * 110.72649 * 100.02720 * 4 2 1 6 6 N 1.46498 * 110.72161 * 336.74600 * 4 2 1 7 7 C 1.36939 * 119.99414 * 111.93402 * 6 4 2 8 8 H 1.07997 * 120.00571 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99687 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00087 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47295 * 89.99456 * 11 9 7 13 13 H 1.48493 * 109.47624 * 209.99650 * 11 9 7 14 14 H 1.48497 * 109.47130 * 329.99933 * 11 9 7 15 15 C 1.55160 * 102.94067 * 218.38757 * 4 2 1 16 16 C 1.54908 * 101.61497 * 35.48107 * 15 4 2 17 17 N 1.47020 * 109.88441 * 121.17906 * 2 1 3 18 18 C 1.34767 * 125.64769 * 298.31419 * 17 2 1 19 19 O 1.21549 * 120.00100 * 0.02562 * 18 17 2 20 20 C 1.47935 * 120.00103 * 179.97438 * 18 17 2 21 21 C 1.38252 * 119.24536 * 179.73357 * 20 18 17 22 22 C 1.40692 * 118.65369 * 179.76777 * 21 20 18 23 23 C 1.40236 * 122.05916 * 180.20588 * 22 21 20 24 24 C 1.36311 * 119.48508 * 180.29156 * 23 22 21 25 25 C 1.39257 * 120.94026 * 359.97438 * 24 23 22 26 26 C 1.36364 * 121.05850 * 359.97438 * 25 24 23 27 27 C 1.40036 * 119.59114 * 0.02562 * 26 25 24 28 28 C 1.41345 * 121.85457 * 179.97438 * 27 26 25 29 29 O 1.35495 * 119.95174 * 0.02562 * 28 27 26 30 30 N 1.31395 * 120.09805 * 180.02562 * 28 27 26 31 31 H 1.08999 * 109.47216 * 186.54475 * 1 2 3 32 32 H 1.08998 * 109.46460 * 306.53795 * 1 2 3 33 33 H 1.08992 * 109.47418 * 66.53819 * 1 2 3 34 34 H 0.96991 * 120.00824 * 291.93300 * 6 4 2 35 35 H 0.96996 * 119.99801 * 180.02562 * 10 9 7 36 36 H 1.08999 * 111.00563 * 153.57530 * 15 4 2 37 37 H 1.08998 * 111.00246 * 277.39347 * 15 4 2 38 38 H 1.09005 * 110.36678 * 81.85365 * 16 15 4 39 39 H 1.09004 * 110.36921 * 204.16943 * 16 15 4 40 40 H 1.08003 * 120.67494 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.25961 * 0.31458 * 23 22 21 42 42 H 1.07992 * 119.53318 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.46932 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.20084 * 180.02562 * 26 25 24 45 45 H 0.96701 * 114.00010 * 270.01954 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7477 -1.2439 5 1 2.3528 -0.0431 -2.0203 6 7 1.0471 -1.6830 -1.7498 7 6 0.4440 -1.4524 -2.9574 8 1 0.7109 -0.5808 -3.5367 9 6 -0.5112 -2.3383 -3.4366 10 7 -0.8369 -3.4003 -2.7305 11 14 -1.3344 -2.0234 -5.0836 12 1 -0.5486 -2.6747 -6.1624 13 1 -2.7093 -2.5841 -5.0652 14 1 -1.3995 -0.5609 -5.3329 15 6 3.2876 -1.5133 -0.6947 16 6 2.8156 -1.8804 0.7343 17 7 2.0301 -0.7158 1.1828 18 6 1.8088 -0.3648 2.4650 19 8 1.1440 0.6205 2.7194 20 6 2.3739 -1.1793 3.5630 21 6 2.1418 -0.8018 4.8726 22 6 2.6810 -1.5882 5.9071 23 6 2.4864 -1.2738 7.2599 24 6 3.0380 -2.0692 8.2196 25 6 3.7910 -3.1890 7.8757 26 6 3.9985 -3.5233 6.5700 27 6 3.4471 -2.7294 5.5569 28 6 3.6323 -3.0312 4.1885 29 8 4.3603 -4.1154 3.8274 30 7 3.0995 -2.2619 3.2661 31 1 -0.3633 -1.0210 0.1171 32 1 -0.3632 0.6118 0.8257 33 1 -0.3634 0.4091 -0.9426 34 1 0.8070 -2.4656 -1.2295 35 1 -1.5041 -4.0195 -3.0656 36 1 3.4851 -2.4092 -1.2833 37 1 4.1655 -0.8681 -0.6625 38 1 2.1900 -2.7728 0.7096 39 1 3.6732 -2.0354 1.3890 40 1 1.5556 0.0771 5.0970 41 1 1.9037 -0.4084 7.5391 42 1 2.8890 -1.8276 9.2616 43 1 4.2168 -3.8029 8.6555 44 1 4.5845 -4.3952 6.3190 45 1 5.3035 -3.9354 3.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986358966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 13.725936 kcal Electronic energy + Delta-G solvation = -29525.891465 eV Core-core repulsion = 25509.574322 eV Total energy + Delta-G solvation = -4016.317143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36810 -39.72900 -38.20657 -37.60061 -36.59559 -33.93631 -32.60731 -31.85840 -31.18059 -30.58697 -29.77050 -28.65730 -25.11138 -24.91950 -24.27860 -23.35311 -22.44478 -22.29645 -20.41901 -19.14496 -18.54514 -18.08253 -17.76135 -17.27596 -16.51530 -16.03783 -15.80734 -15.50632 -14.92776 -14.76047 -14.46214 -14.24941 -13.95480 -13.68987 -13.59398 -13.37395 -13.31785 -12.71606 -12.54800 -12.42026 -12.29007 -12.13600 -11.94378 -11.57989 -11.47124 -11.19046 -10.85954 -10.79131 -10.61772 -10.51078 -10.38259 -10.23896 -10.09349 -9.84366 -9.59224 -9.47976 -9.23319 -8.92010 -8.39871 -8.06491 -6.99477 -5.77515 -3.06826 -0.09445 0.38443 1.48246 2.29492 3.09962 3.23878 3.34016 3.43664 3.49246 3.50730 3.82397 4.19853 4.25562 4.41342 4.49372 4.58374 4.70262 4.81516 4.89938 5.10125 5.24006 5.32561 5.39585 5.43211 5.53177 5.57503 5.60370 5.74726 5.82521 5.93169 5.98400 6.01412 6.09760 6.14814 6.25098 6.38592 6.41893 6.50428 6.52497 6.70724 6.78041 6.83636 7.04949 7.16537 7.29619 7.54340 7.69206 7.94074 8.39409 8.44231 9.51590 10.07015 10.42341 11.44441 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.002657 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.124533 B =10536.680725 C =11021.959638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 H 0.064 0.936 4 C 0.171 3.829 5 H 0.079 0.921 6 N -0.707 5.707 7 C -0.242 4.242 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.906 3.094 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.156 4.156 16 C 0.109 3.891 17 N -0.581 5.581 18 C 0.576 3.424 19 O -0.543 6.543 20 C 0.092 3.908 21 C -0.098 4.098 22 C -0.021 4.021 23 C -0.104 4.104 24 C -0.098 4.098 25 C -0.117 4.117 26 C -0.082 4.082 27 C -0.110 4.110 28 C 0.350 3.650 29 O -0.471 6.471 30 N -0.473 5.473 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.033 1.446 22.189 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 H 0.082 0.918 4 C 0.058 3.942 5 H 0.098 0.902 6 N -0.345 5.345 7 C -0.373 4.373 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.737 3.263 12 H -0.218 1.218 13 H -0.219 1.219 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.014 4.014 17 N -0.311 5.311 18 C 0.363 3.637 19 O -0.422 6.422 20 C -0.034 4.034 21 C -0.119 4.119 22 C -0.026 4.026 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.135 4.135 26 C -0.101 4.101 27 C -0.114 4.114 28 C 0.155 3.845 29 O -0.278 6.278 30 N -0.194 5.194 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.173 0.827 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 13.108 1.612 21.268 25.035 hybrid contribution -0.287 -0.001 0.090 0.300 sum 12.822 1.611 21.358 24.963 Atomic orbital electron populations 1.21752 0.93781 1.02500 1.01109 1.22722 0.96066 0.95552 0.85437 0.91824 1.21244 0.88721 0.92065 0.92144 0.90243 1.42333 1.44286 1.26327 1.21590 1.19262 1.16160 1.06524 0.95365 0.91026 1.24741 0.99870 0.97334 0.98689 1.69667 1.35610 1.14077 1.38330 0.86212 0.78762 0.77461 0.83861 1.21759 1.21866 1.20744 1.23391 0.98608 1.01777 0.95880 1.22602 0.95880 0.87831 0.95055 1.48466 1.50089 1.28179 1.04406 1.17386 0.80854 0.84087 0.81419 1.90762 1.40806 1.27388 1.83203 1.20713 0.97085 0.92331 0.93265 1.22181 0.98290 1.00239 0.91229 1.18064 0.96282 0.93840 0.94407 1.21046 0.99957 1.00312 0.90888 1.21038 0.96289 0.94495 0.99916 1.21008 0.98752 0.97297 0.96481 1.20964 0.98462 0.98649 0.92060 1.19069 1.01326 0.96775 0.94227 1.19274 0.92763 0.86100 0.86361 1.84759 1.24150 1.28268 1.90603 1.67299 1.10056 1.04177 1.37854 0.91932 0.93953 0.91309 0.77961 0.93474 0.89681 0.91704 0.91528 0.88751 0.82657 0.84513 0.85245 0.85315 0.84453 0.73842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.26 37.16 0.31 -2.52 16 2 C 0.11 2.06 3.44 -66.95 -0.23 1.83 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.17 3.34 3.57 -66.09 -0.24 3.11 16 5 H 0.08 1.51 7.90 -51.93 -0.41 1.10 16 6 N -0.71 -17.02 3.52 -51.65 -0.18 -17.20 16 7 C -0.24 -6.46 9.75 -15.06 -0.15 -6.61 16 8 H 0.07 1.85 7.72 -52.49 -0.41 1.45 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 11 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.16 -2.58 6.77 -24.58 -0.17 -2.74 16 16 C 0.11 1.82 5.82 -2.51 -0.01 1.81 16 17 N -0.58 -10.55 3.07 -164.05 -0.50 -11.05 16 18 C 0.58 10.49 7.62 -12.29 -0.09 10.40 16 19 O -0.54 -10.95 15.41 5.32 0.08 -10.87 16 20 C 0.09 1.41 6.71 -83.09 -0.56 0.85 16 21 C -0.10 -1.27 9.41 -38.65 -0.36 -1.63 16 22 C -0.02 -0.23 5.74 -106.84 -0.61 -0.84 16 23 C -0.10 -0.85 9.81 -39.53 -0.39 -1.24 16 24 C -0.10 -0.65 9.95 -39.90 -0.40 -1.04 16 25 C -0.12 -0.76 9.95 -39.88 -0.40 -1.16 16 26 C -0.08 -0.65 9.58 -39.58 -0.38 -1.02 16 27 C -0.11 -1.17 5.76 -106.66 -0.61 -1.79 16 28 C 0.35 4.15 7.80 -16.56 -0.13 4.02 16 29 O -0.47 -4.46 12.83 -18.18 -0.23 -4.69 16 30 N -0.47 -6.82 6.49 -9.60 -0.06 -6.88 16 31 H 0.06 1.48 7.55 -51.93 -0.39 1.09 16 32 H 0.04 0.88 7.09 -51.93 -0.37 0.51 16 33 H 0.07 1.51 7.97 -51.93 -0.41 1.10 16 34 H 0.39 10.15 7.81 -40.82 -0.32 9.83 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.43 5.86 -51.93 -0.30 1.13 16 40 H 0.16 1.87 7.59 -52.48 -0.40 1.47 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 44 H 0.14 0.82 7.65 -52.48 -0.40 0.42 16 45 H 0.40 1.68 9.06 45.56 0.41 2.10 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -33.60 371.93 -9.20 -42.80 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.09 Total: 11.09 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -4.51 Total: 1.03 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.02 Total: -62.13 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.15 Total: -15.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.60 -9.20 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986358966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.527 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds