Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87063 * 2 1 4 4 C 1.54324 * 109.87664 * 238.98919 * 2 1 3 5 5 H 1.08997 * 110.72649 * 100.02720 * 4 2 1 6 6 N 1.46498 * 110.72161 * 336.74600 * 4 2 1 7 7 C 1.36939 * 119.99414 * 111.93402 * 6 4 2 8 8 H 1.07997 * 120.00571 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99687 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00087 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47295 * 89.99456 * 11 9 7 13 13 H 1.48493 * 109.47624 * 209.99650 * 11 9 7 14 14 H 1.48497 * 109.47130 * 329.99933 * 11 9 7 15 15 C 1.55160 * 102.94067 * 218.38757 * 4 2 1 16 16 C 1.54908 * 101.61497 * 35.48107 * 15 4 2 17 17 N 1.47020 * 109.88441 * 121.17906 * 2 1 3 18 18 C 1.34767 * 125.64769 * 298.31419 * 17 2 1 19 19 O 1.21549 * 120.00100 * 0.02562 * 18 17 2 20 20 C 1.47935 * 120.00103 * 179.97438 * 18 17 2 21 21 C 1.38252 * 119.24536 * 179.73357 * 20 18 17 22 22 C 1.40692 * 118.65369 * 179.76777 * 21 20 18 23 23 C 1.40236 * 122.05916 * 180.20588 * 22 21 20 24 24 C 1.36311 * 119.48508 * 180.29156 * 23 22 21 25 25 C 1.39257 * 120.94026 * 359.97438 * 24 23 22 26 26 C 1.36364 * 121.05850 * 359.97438 * 25 24 23 27 27 C 1.40036 * 119.59114 * 0.02562 * 26 25 24 28 28 C 1.41345 * 121.85457 * 179.97438 * 27 26 25 29 29 O 1.35495 * 119.95174 * 0.02562 * 28 27 26 30 30 N 1.31395 * 120.09805 * 180.02562 * 28 27 26 31 31 H 1.08999 * 109.47216 * 186.54475 * 1 2 3 32 32 H 1.08998 * 109.46460 * 306.53795 * 1 2 3 33 33 H 1.08992 * 109.47418 * 66.53819 * 1 2 3 34 34 H 0.96991 * 120.00824 * 291.93300 * 6 4 2 35 35 H 0.96996 * 119.99801 * 180.02562 * 10 9 7 36 36 H 1.08999 * 111.00563 * 153.57530 * 15 4 2 37 37 H 1.08998 * 111.00246 * 277.39347 * 15 4 2 38 38 H 1.09005 * 110.36678 * 81.85365 * 16 15 4 39 39 H 1.09004 * 110.36921 * 204.16943 * 16 15 4 40 40 H 1.08003 * 120.67494 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.25961 * 0.31458 * 23 22 21 42 42 H 1.07992 * 119.53318 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.46932 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.20084 * 180.02562 * 26 25 24 45 45 H 0.96701 * 114.00010 * 270.01954 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7477 -1.2439 5 1 2.3528 -0.0431 -2.0203 6 7 1.0471 -1.6830 -1.7498 7 6 0.4440 -1.4524 -2.9574 8 1 0.7109 -0.5808 -3.5367 9 6 -0.5112 -2.3383 -3.4366 10 7 -0.8369 -3.4003 -2.7305 11 14 -1.3344 -2.0234 -5.0836 12 1 -0.5486 -2.6747 -6.1624 13 1 -2.7093 -2.5841 -5.0652 14 1 -1.3995 -0.5609 -5.3329 15 6 3.2876 -1.5133 -0.6947 16 6 2.8156 -1.8804 0.7343 17 7 2.0301 -0.7158 1.1828 18 6 1.8088 -0.3648 2.4650 19 8 1.1440 0.6205 2.7194 20 6 2.3739 -1.1793 3.5630 21 6 2.1418 -0.8018 4.8726 22 6 2.6810 -1.5882 5.9071 23 6 2.4864 -1.2738 7.2599 24 6 3.0380 -2.0692 8.2196 25 6 3.7910 -3.1890 7.8757 26 6 3.9985 -3.5233 6.5700 27 6 3.4471 -2.7294 5.5569 28 6 3.6323 -3.0312 4.1885 29 8 4.3603 -4.1154 3.8274 30 7 3.0995 -2.2619 3.2661 31 1 -0.3633 -1.0210 0.1171 32 1 -0.3632 0.6118 0.8257 33 1 -0.3634 0.4091 -0.9426 34 1 0.8070 -2.4656 -1.2295 35 1 -1.5041 -4.0195 -3.0656 36 1 3.4851 -2.4092 -1.2833 37 1 4.1655 -0.8681 -0.6625 38 1 2.1900 -2.7728 0.7096 39 1 3.6732 -2.0354 1.3890 40 1 1.5556 0.0771 5.0970 41 1 1.9037 -0.4084 7.5391 42 1 2.8890 -1.8276 9.2616 43 1 4.2168 -3.8029 8.6555 44 1 4.5845 -4.3952 6.3190 45 1 5.3035 -3.9354 3.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986358966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -9.763461 kcal Electronic energy + Delta-G solvation = -29526.910041 eV Core-core repulsion = 25509.574322 eV Total energy + Delta-G solvation = -4017.335720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.25055 -41.05733 -39.00238 -38.91605 -37.57332 -35.76080 -33.52726 -33.20278 -32.35754 -32.02187 -30.92433 -30.13776 -26.76417 -26.01995 -25.28249 -25.02344 -23.57234 -23.15888 -21.68947 -20.51583 -19.54485 -19.41826 -18.87950 -18.60705 -17.59935 -17.23324 -16.90289 -16.52513 -16.31482 -16.16456 -15.51038 -15.49033 -15.14002 -15.03758 -14.89650 -14.60178 -14.39388 -14.33397 -13.92516 -13.80874 -13.23905 -13.06644 -12.97208 -12.88250 -12.80827 -12.75564 -12.45223 -12.30655 -12.20075 -12.15330 -11.90392 -11.84462 -11.54753 -11.26999 -11.13880 -10.94816 -10.29551 -10.18346 -9.67234 -9.06776 -9.00273 -7.91099 -5.19402 -0.90201 -0.38912 0.76723 1.32622 1.48840 1.49839 1.57838 1.90561 2.22950 2.40898 2.57727 2.93303 3.21781 3.41033 3.51835 3.62455 3.77814 3.80448 3.87827 3.90752 4.06675 4.21605 4.25537 4.35257 4.37265 4.41560 4.52471 4.61528 4.64215 4.65879 4.79919 4.84877 4.94663 5.00924 5.10293 5.12297 5.22848 5.32745 5.35168 5.38174 5.44475 5.45035 5.51618 5.57085 5.83807 6.28822 6.45962 6.53755 6.69735 7.06354 7.36089 8.08966 8.33490 9.32096 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.002657 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.124533 B =10536.680725 C =11021.959638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.112 3.888 3 H 0.077 0.923 4 C 0.165 3.835 5 H 0.090 0.910 6 N -0.716 5.716 7 C -0.232 4.232 8 H 0.082 0.918 9 C -0.074 4.074 10 N -0.969 5.969 11 Si 0.969 3.031 12 H -0.287 1.287 13 H -0.303 1.303 14 H -0.269 1.269 15 C -0.141 4.141 16 C 0.119 3.881 17 N -0.586 5.586 18 C 0.571 3.429 19 O -0.573 6.573 20 C 0.058 3.942 21 C -0.092 4.092 22 C -0.039 4.039 23 C -0.114 4.114 24 C -0.088 4.088 25 C -0.104 4.104 26 C -0.089 4.089 27 C -0.119 4.119 28 C 0.352 3.648 29 O -0.475 6.475 30 N -0.502 5.502 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.115 0.885 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.369 1.441 24.707 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.006 3.994 3 H 0.095 0.905 4 C 0.054 3.946 5 H 0.108 0.892 6 N -0.353 5.353 7 C -0.363 4.363 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.798 3.202 12 H -0.214 1.214 13 H -0.230 1.230 14 H -0.194 1.194 15 C -0.180 4.180 16 C -0.003 4.003 17 N -0.316 5.316 18 C 0.360 3.640 19 O -0.454 6.454 20 C -0.066 4.066 21 C -0.113 4.113 22 C -0.044 4.044 23 C -0.131 4.131 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.122 4.122 28 C 0.157 3.843 29 O -0.285 6.285 30 N -0.224 5.224 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.132 0.868 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.182 0.818 44 H 0.175 0.825 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 15.513 1.649 23.788 28.447 hybrid contribution -0.899 -0.035 -0.398 0.984 sum 14.613 1.614 23.390 27.627 Atomic orbital electron populations 1.21555 0.95669 1.00057 1.00250 1.22530 0.94388 0.96367 0.86083 0.90495 1.21476 0.88823 0.91878 0.92471 0.89189 1.42446 1.45306 1.26635 1.20925 1.19663 1.15001 1.05913 0.95763 0.90016 1.25495 1.01381 0.97699 1.02081 1.69835 1.36712 1.15362 1.40116 0.85206 0.77042 0.77749 0.80162 1.21418 1.22990 1.19417 1.23287 0.98126 1.01672 0.94945 1.22536 0.95736 0.86320 0.95678 1.48497 1.50401 1.28392 1.04327 1.17922 0.80187 0.83991 0.81909 1.90717 1.42147 1.28809 1.83750 1.20259 0.99892 0.93586 0.92839 1.22254 0.97766 1.00274 0.91030 1.18260 0.96858 0.94098 0.95168 1.21319 1.00501 1.01432 0.89887 1.21509 0.94435 0.93495 1.01230 1.21502 0.97041 0.96947 0.96675 1.21248 0.98621 0.98952 0.92080 1.19263 1.01504 0.97142 0.94300 1.19445 0.92320 0.85760 0.86760 1.84715 1.25852 1.27393 1.90575 1.67071 1.11369 1.04787 1.39180 0.95187 0.94202 0.92418 0.79627 0.94316 0.90104 0.88418 0.94338 0.86778 0.82739 0.82922 0.81853 0.81847 0.82505 0.71239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.26 71.98 0.59 -4.59 16 2 C 0.11 4.35 3.44 45.34 0.16 4.51 16 3 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 4 C 0.16 6.41 3.57 46.18 0.16 6.57 16 5 H 0.09 3.32 7.90 -2.39 -0.02 3.30 16 6 N -0.72 -35.31 3.52 -317.33 -1.12 -36.43 16 7 C -0.23 -12.50 9.75 84.03 0.82 -11.68 16 8 H 0.08 4.17 7.72 -2.91 -0.02 4.15 16 9 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 10 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 11 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 C -0.14 -4.52 6.77 31.99 0.22 -4.30 16 16 C 0.12 4.06 5.82 86.85 0.51 4.57 16 17 N -0.59 -21.89 3.07 -791.21 -2.43 -24.31 16 18 C 0.57 21.66 7.62 86.81 0.66 22.33 16 19 O -0.57 -24.13 15.41 -3.87 -0.06 -24.19 16 20 C 0.06 1.86 6.71 41.44 0.28 2.14 16 21 C -0.09 -2.42 9.41 22.87 0.22 -2.21 16 22 C -0.04 -0.82 5.74 -21.30 -0.12 -0.94 16 23 C -0.11 -1.57 9.81 22.31 0.22 -1.35 16 24 C -0.09 -0.77 9.95 22.07 0.22 -0.55 16 25 C -0.10 -0.87 9.95 22.08 0.22 -0.65 16 26 C -0.09 -1.12 9.58 22.27 0.21 -0.90 16 27 C -0.12 -2.34 5.76 -21.19 -0.12 -2.46 16 28 C 0.35 8.14 7.80 85.52 0.67 8.81 16 29 O -0.47 -8.34 12.83 -87.96 -1.13 -9.47 16 30 N -0.50 -14.72 6.49 -297.68 -1.93 -16.65 16 31 H 0.03 1.49 7.55 -2.39 -0.02 1.47 16 32 H 0.04 1.74 7.09 -2.39 -0.02 1.72 16 33 H 0.06 2.62 7.97 -2.39 -0.02 2.60 16 34 H 0.37 20.43 7.81 -92.71 -0.72 19.71 16 35 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.11 3.46 5.86 -2.38 -0.01 3.44 16 40 H 0.15 3.89 7.59 -2.91 -0.02 3.86 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 44 H 0.16 1.29 7.65 -2.91 -0.02 1.27 16 45 H 0.43 2.76 9.06 -74.06 -0.67 2.09 16 Total: -1.00 -76.37 371.93 0.67 -75.70 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.35 Total: 31.05 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 5.37 Total: 15.50 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -5.19 Total: -137.04 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.19 Total: -33.66 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.37 0.67 -75.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986358966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.936 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds