Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47224 * 204.24873 * 3 2 1 5 5 C 1.35432 * 117.00106 * 180.02562 * 4 3 2 6 6 N 1.32235 * 119.79885 * 0.26540 * 5 4 3 7 7 C 1.31873 * 121.79944 * 180.27054 * 6 5 4 8 8 C 1.38357 * 121.18572 * 359.74421 * 7 6 5 9 9 C 1.38331 * 119.46016 * 359.97438 * 8 7 6 10 10 C 1.39996 * 118.34857 * 359.97438 * 9 8 7 11 11 C 1.47519 * 120.60135 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00294 * 173.59213 * 11 10 9 13 13 N 1.34780 * 119.99673 * 353.58340 * 11 10 9 14 14 C 1.47389 * 135.85566 * 354.50680 * 13 11 10 15 15 C 1.51786 * 87.59466 * 205.58757 * 14 13 11 16 16 C 1.47389 * 135.85325 * 174.44564 * 13 11 10 17 17 C 1.53513 * 117.00026 * 92.96224 * 15 14 13 18 18 C 1.54625 * 102.70138 * 164.16288 * 17 15 14 19 19 N 1.47148 * 107.37822 * 339.38130 * 18 17 15 20 20 C 1.36937 * 125.57851 * 179.07044 * 19 18 17 21 21 H 1.07998 * 120.00101 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00168 * 0.02562 * 20 19 18 23 23 N 1.31627 * 120.00052 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00183 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47108 * 60.00082 * 24 22 20 26 26 H 1.48498 * 109.47472 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47258 * 300.00313 * 24 22 20 28 28 C 1.47752 * 108.83935 * 359.09151 * 19 18 17 29 29 H 4.38442 * 5.44477 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47136 * 84.24543 * 3 2 1 31 31 H 1.09005 * 109.47282 * 324.25219 * 3 2 1 32 32 H 1.08002 * 119.41257 * 179.72714 * 7 6 5 33 33 H 1.08003 * 120.27199 * 179.97438 * 8 7 6 34 34 H 1.07996 * 120.83373 * 179.97438 * 9 8 7 35 35 H 1.09005 * 113.53933 * 320.27908 * 14 13 11 36 36 H 1.08994 * 113.54708 * 90.88809 * 14 13 11 37 37 H 1.09007 * 113.54390 * 269.04057 * 16 13 11 38 38 H 1.09000 * 113.54232 * 39.64107 * 16 13 11 39 39 H 1.09000 * 110.75901 * 282.46500 * 17 15 14 40 40 H 1.08995 * 110.76673 * 45.85656 * 17 15 14 41 41 H 1.09001 * 109.86989 * 98.83534 * 18 17 15 42 42 H 1.09009 * 109.86201 * 219.93534 * 18 17 15 43 43 H 0.96997 * 119.99606 * 179.97438 * 23 22 20 44 44 H 1.09000 * 110.40225 * 263.50204 * 28 19 18 45 45 H 1.09001 * 110.40376 * 141.07852 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.2292 0.5533 5 6 4.4643 1.3919 0.6257 6 7 5.2666 0.4359 0.1885 7 6 6.5792 0.5504 0.2449 8 6 7.1777 1.6854 0.7624 9 6 6.3862 2.7195 1.2289 10 6 4.9954 2.5761 1.1581 11 6 4.1044 3.6481 1.6408 12 8 2.9036 3.5642 1.4687 13 7 4.6213 4.7204 2.2728 14 6 5.9567 5.1274 2.7454 15 6 5.2573 5.9993 3.7724 16 6 4.0974 5.9968 2.7912 17 6 5.0025 5.3807 5.1541 18 6 4.6831 6.6169 6.0263 19 7 5.2347 7.7948 5.3381 20 6 5.1460 9.0886 5.7778 21 1 5.5851 9.8872 5.1983 22 6 4.4918 9.3737 6.9684 23 7 3.9571 8.4004 7.6750 24 14 4.3703 11.1387 7.5679 25 1 3.6504 11.9559 6.5585 26 1 3.6292 11.1747 8.8543 27 1 5.7351 11.6887 7.7679 28 6 5.8994 7.3530 4.0947 29 1 -1.0502 -0.0004 0.0000 30 1 3.0094 -0.1022 -1.0225 31 1 3.0097 -0.8333 0.6004 32 1 7.1981 -0.2563 -0.1193 33 1 8.2542 1.7634 0.8018 34 1 6.8299 3.6152 1.6377 35 1 6.5303 4.3114 3.1853 36 1 6.5255 5.6940 2.0083 37 1 4.1391 6.8107 2.0672 38 1 3.1214 5.9053 3.2679 39 1 4.1516 4.7002 5.1218 40 1 5.8935 4.8700 5.5191 41 1 3.6039 6.7238 6.1363 42 1 5.1482 6.5089 7.0062 43 1 3.5002 8.5996 8.5071 44 1 6.9709 7.2363 4.2574 45 1 5.7116 8.0639 3.2901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073134629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 110.896416 kcal Electronic energy + Delta-G solvation = -29003.303603 eV Core-core repulsion = 24991.200088 eV Total energy + Delta-G solvation = -4012.103515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29015 -40.40668 -38.35681 -37.99730 -35.68604 -33.67171 -33.15519 -32.11497 -30.99582 -29.49731 -28.69909 -27.71893 -26.25741 -25.96376 -24.53175 -23.49974 -23.15624 -20.36276 -19.93484 -19.01921 -18.70892 -18.27229 -17.28921 -17.03437 -16.72403 -16.55728 -15.70895 -15.55311 -15.34180 -14.86372 -14.62548 -14.47140 -14.16581 -13.96525 -13.61131 -13.41352 -13.14938 -12.98426 -12.60333 -12.39043 -12.25353 -12.05338 -11.92136 -11.80856 -11.02510 -10.96356 -10.92263 -10.66356 -10.46911 -10.40979 -10.27232 -10.26037 -10.16199 -10.11727 -9.80678 -9.71419 -9.47959 -8.87325 -8.60267 -8.49981 -6.85134 -5.71735 -3.05802 0.42133 0.91827 1.98083 2.54838 2.79921 2.85459 3.25400 3.40520 3.44887 3.46326 3.60449 3.87750 4.10603 4.34744 4.38772 4.48755 4.58436 4.63981 4.86837 4.92560 5.00426 5.06063 5.07234 5.26396 5.35879 5.48105 5.50041 5.50544 5.61735 5.65557 5.70112 5.81710 5.85131 5.98331 6.03304 6.18289 6.20015 6.44712 6.51501 6.64021 6.67001 6.92864 7.29983 7.40259 7.54357 7.61303 7.81658 7.83216 8.24254 8.26410 9.20563 9.80758 10.45957 11.39705 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.002453 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.819125 B =11412.860198 C =12510.413363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.200 4.200 3 C 0.180 3.820 4 O -0.264 6.264 5 C 0.372 3.628 6 N -0.548 5.548 7 C 0.163 3.837 8 C -0.219 4.219 9 C -0.017 4.017 10 C -0.197 4.197 11 C 0.588 3.412 12 O -0.518 6.518 13 N -0.641 5.641 14 C 0.103 3.897 15 C -0.104 4.104 16 C 0.130 3.870 17 C -0.118 4.118 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.154 3.846 29 H 0.224 0.776 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -17.475 -16.105 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.200 4.200 3 C 0.105 3.895 4 O -0.169 6.169 5 C 0.192 3.808 6 N -0.272 5.272 7 C 0.006 3.994 8 C -0.240 4.240 9 C -0.042 4.042 10 C -0.203 4.203 11 C 0.377 3.623 12 O -0.394 6.394 13 N -0.376 5.376 14 C -0.020 4.020 15 C -0.105 4.105 16 C 0.008 3.992 17 C -0.156 4.156 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.027 3.973 29 H 0.241 0.759 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.566 -18.178 -16.379 24.890 hybrid contribution 0.283 1.414 0.582 1.555 sum 4.849 -16.764 -15.797 23.539 Atomic orbital electron populations 1.24996 0.95843 0.96996 0.99676 1.22289 0.93600 1.02677 1.01451 1.19135 0.84456 0.85867 1.00011 1.86579 1.16034 1.38106 1.76202 1.19737 0.84080 0.88542 0.88396 1.67470 1.06784 1.30264 1.22692 1.22654 0.89040 0.96380 0.91280 1.21980 1.01835 0.95348 1.04807 1.22199 0.91290 0.99172 0.91551 1.20021 0.94369 0.95761 1.10112 1.17246 0.87164 0.80534 0.77373 1.90853 1.14439 1.77799 1.56328 1.49626 1.12380 1.17659 1.57975 1.23027 0.86585 0.97087 0.95339 1.22169 0.96047 0.97837 0.94490 1.22769 0.99489 0.83231 0.93670 1.22480 1.00681 0.99393 0.93067 1.21223 0.98444 0.81849 0.92995 1.44523 1.64327 1.03389 1.20841 1.18987 1.30582 0.82482 1.03750 0.90439 1.24805 1.00401 0.97634 0.97529 1.69952 1.41326 1.29699 1.15880 0.86201 0.77573 0.84030 0.77944 1.21166 1.21643 1.21194 1.21134 0.94888 0.90834 0.90425 0.75883 0.89103 0.89092 0.81751 0.83727 0.82696 0.90118 0.89279 0.89611 0.89992 0.91964 0.91858 0.93485 0.93766 0.93672 0.95567 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 19.25 29.55 0.57 -1.08 16 2 C -0.20 -2.44 13.73 -37.12 -0.51 -2.95 16 3 C 0.18 2.07 5.78 34.37 0.20 2.27 16 4 O -0.26 -4.01 8.20 -39.65 -0.33 -4.34 16 5 C 0.37 5.06 7.50 -16.61 -0.12 4.93 16 6 N -0.55 -5.98 9.21 -12.98 -0.12 -6.10 16 7 C 0.16 1.27 11.17 -17.49 -0.20 1.07 16 8 C -0.22 -1.59 10.09 -39.50 -0.40 -1.99 16 9 C -0.02 -0.16 9.25 -38.89 -0.36 -0.52 16 10 C -0.20 -2.65 5.90 -104.69 -0.62 -3.27 16 11 C 0.59 9.74 8.00 -12.48 -0.10 9.64 16 12 O -0.52 -10.62 16.00 -16.38 -0.26 -10.88 16 13 N -0.64 -9.51 3.68 -186.71 -0.69 -10.20 16 14 C 0.10 1.21 5.50 -7.48 -0.04 1.17 16 15 C -0.10 -1.63 1.06 -155.29 -0.16 -1.80 16 16 C 0.13 2.09 7.97 -7.41 -0.06 2.03 16 17 C -0.12 -2.11 6.40 -25.61 -0.16 -2.27 16 18 C 0.18 4.21 5.39 -2.83 -0.02 4.20 16 19 N -0.60 -14.65 3.41 -170.54 -0.58 -15.24 16 20 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -26.73 10.30 55.49 0.57 -26.16 16 24 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.15 2.84 6.71 -3.22 -0.02 2.82 16 29 H 0.22 1.42 7.80 -54.08 -0.42 1.00 16 30 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.16 1.24 4.32 -52.49 -0.23 1.02 16 35 H 0.08 0.81 6.84 -51.93 -0.36 0.45 16 36 H 0.09 0.84 8.12 -51.93 -0.42 0.41 16 37 H 0.09 1.27 8.07 -51.92 -0.42 0.85 16 38 H 0.08 1.49 8.13 -51.93 -0.42 1.06 16 39 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.25 7.39 -51.93 -0.38 0.86 16 42 H 0.04 1.15 7.49 -51.92 -0.39 0.76 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.04 0.76 8.01 -51.93 -0.42 0.34 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -35.26 380.11 -8.91 -44.17 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.95 Total: -1.36 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.25 Total: 7.60 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.82 Total: -57.70 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.59 Total: -15.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.26 -8.91 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073134629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.067 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds