Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.63785 * 2 1 4 4 C 1.54336 * 111.00267 * 236.91906 * 2 1 3 5 5 N 1.47019 * 107.26498 * 219.60150 * 4 2 1 6 6 C 1.36933 * 125.65008 * 178.84821 * 5 4 2 7 7 H 1.07996 * 120.00433 * 191.17559 * 6 5 4 8 8 C 1.38817 * 119.99734 * 11.17295 * 6 5 4 9 9 N 1.31615 * 120.00189 * 206.17410 * 8 6 5 10 10 Si 1.86802 * 119.99879 * 26.17332 * 8 6 5 11 11 H 1.48497 * 109.47014 * 275.73300 * 10 8 6 12 12 H 1.48498 * 109.47123 * 35.73263 * 10 8 6 13 13 H 1.48500 * 109.46952 * 155.73635 * 10 8 6 14 14 C 1.47421 * 108.70310 * 358.58993 * 5 4 2 15 15 C 1.54903 * 104.83603 * 24.35285 * 14 5 4 16 16 H 1.09002 * 111.00772 * 81.10525 * 15 14 5 17 17 N 1.46502 * 111.00738 * 204.92055 * 15 14 5 18 18 C 1.34776 * 119.99729 * 273.54694 * 17 15 14 19 19 O 1.21547 * 120.00546 * 359.97438 * 18 17 15 20 20 C 1.47928 * 119.99813 * 179.97438 * 18 17 15 21 21 C 1.38263 * 119.24252 * 179.72279 * 20 18 17 22 22 C 1.40691 * 118.65119 * 179.78151 * 21 20 18 23 23 C 1.40239 * 122.05555 * 180.21598 * 22 21 20 24 24 C 1.36314 * 119.47713 * 180.29851 * 23 22 21 25 25 C 1.39247 * 120.94824 * 359.95637 * 24 23 22 26 26 C 1.36358 * 121.05742 * 0.04399 * 25 24 23 27 27 C 1.40046 * 119.59276 * 359.97386 * 26 25 24 28 28 C 1.41343 * 121.85574 * 179.97438 * 27 26 25 29 29 O 1.35495 * 119.95240 * 0.02562 * 28 27 26 30 30 N 1.31391 * 120.09768 * 180.02562 * 28 27 26 31 31 H 1.08996 * 109.47098 * 296.86240 * 1 2 3 32 32 H 1.09001 * 109.46512 * 56.86174 * 1 2 3 33 33 H 1.08997 * 109.47289 * 176.85868 * 1 2 3 34 34 H 1.08996 * 109.99015 * 100.12326 * 4 2 1 35 35 H 1.09001 * 109.77480 * 338.95659 * 4 2 1 36 36 H 0.97001 * 120.00637 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.37140 * 143.19711 * 14 5 4 38 38 H 1.09006 * 110.36336 * 265.40621 * 14 5 4 39 39 H 0.97002 * 120.00338 * 93.54907 * 17 15 14 40 40 H 1.08003 * 120.67251 * 0.02562 * 21 20 18 41 41 H 1.07996 * 120.26044 * 0.25768 * 23 22 21 42 42 H 1.08004 * 119.52425 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.47106 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.20666 * 179.97438 * 26 25 24 45 45 H 0.96702 * 114.00261 * 270.01659 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2495 -1.5470 -0.7353 6 6 4.0125 -2.3919 -1.4962 7 1 4.7341 -3.0414 -1.0232 8 6 3.8585 -2.4135 -2.8756 9 7 4.1583 -3.5006 -3.5544 10 14 3.2257 -0.8996 -3.7685 11 1 1.7413 -0.8867 -3.7301 12 1 3.7487 0.3214 -3.1046 13 1 3.6840 -0.9302 -5.1807 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7934 1.2152 16 1 1.4471 -1.6528 1.4391 17 7 2.2175 0.0728 2.3886 18 6 2.3113 -0.4692 3.6189 19 8 2.2805 -1.6767 3.7552 20 6 2.4517 0.4054 4.8037 21 6 2.5408 -0.1671 6.0591 22 6 2.6788 0.6761 7.1768 23 6 2.7799 0.1720 8.4815 24 6 2.9057 1.0374 9.5271 25 6 2.9362 2.4138 9.3179 26 6 2.8403 2.9367 8.0622 27 6 2.7095 2.0780 6.9636 28 6 2.6058 2.5681 5.6419 29 8 2.6323 3.9031 5.4114 30 7 2.4837 1.7312 4.6365 31 1 -0.3633 0.4643 0.9167 32 1 -0.3632 0.5618 -0.8606 33 1 -0.3634 -1.0261 -0.0563 34 1 2.3848 -0.0962 -1.9951 35 1 1.3217 -1.4702 -1.5822 36 1 4.0510 -3.5156 -4.5183 37 1 3.7993 -2.1364 1.2220 38 1 4.1944 -0.4422 0.8031 39 1 2.2416 1.0364 2.2800 40 1 2.5093 -1.2400 6.1789 41 1 2.7575 -0.8935 8.6566 42 1 2.9832 0.6500 10.5323 43 1 3.0372 3.0777 10.1636 44 1 2.8650 4.0064 7.9157 45 1 1.7609 4.3221 5.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079843821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = 17.307754 kcal Electronic energy + Delta-G solvation = -28833.138433 eV Core-core repulsion = 24816.976609 eV Total energy + Delta-G solvation = -4016.161824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49464 -39.76793 -38.35981 -38.00038 -36.80126 -34.21896 -32.78857 -32.49914 -31.63104 -31.08842 -29.98000 -28.14204 -25.98470 -25.16790 -24.44932 -23.42243 -22.58631 -21.26396 -20.44832 -20.17952 -19.08941 -18.40335 -17.99882 -17.14453 -16.71051 -16.33297 -16.18135 -15.77344 -15.06533 -14.89026 -14.74496 -14.44985 -14.26032 -13.84237 -13.77385 -13.52187 -13.36879 -13.22424 -13.01788 -12.48718 -12.42894 -12.28764 -12.16958 -11.71717 -11.68649 -11.59493 -11.45190 -11.00113 -10.84823 -10.57303 -10.47237 -10.45934 -10.23617 -9.86278 -9.67353 -9.62345 -9.23502 -8.90377 -8.57560 -8.42942 -7.07509 -5.89822 -3.14573 -0.23895 0.23415 1.34792 2.11515 2.94083 3.06409 3.17260 3.38540 3.50747 3.54131 3.65444 4.05896 4.11889 4.28771 4.39281 4.56290 4.59392 4.70025 4.80132 4.86998 4.97072 5.04350 5.22133 5.24311 5.25730 5.29746 5.44733 5.47585 5.53117 5.75282 5.79899 5.85414 5.89594 5.91996 5.98284 6.03253 6.16759 6.27482 6.32259 6.44429 6.50867 6.63450 6.80455 6.84089 6.98969 7.30792 7.67364 7.69918 8.24586 8.34807 8.87437 9.73971 10.19790 11.26150 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.002394 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.938254 B =11693.032277 C =12199.156005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 H 0.079 0.921 4 C 0.123 3.877 5 N -0.608 5.608 6 C -0.240 4.240 7 H 0.096 0.904 8 C 0.019 3.981 9 N -0.904 5.904 10 Si 0.884 3.116 11 H -0.285 1.285 12 H -0.281 1.281 13 H -0.304 1.304 14 C 0.128 3.872 15 C 0.133 3.867 16 H 0.102 0.898 17 N -0.695 5.695 18 C 0.569 3.431 19 O -0.528 6.528 20 C 0.084 3.916 21 C -0.092 4.092 22 C -0.023 4.023 23 C -0.102 4.102 24 C -0.097 4.097 25 C -0.114 4.114 26 C -0.083 4.083 27 C -0.108 4.108 28 C 0.353 3.647 29 O -0.472 6.472 30 N -0.484 5.484 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.409 0.591 40 H 0.158 0.842 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 15.841 27.973 33.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.097 0.903 4 C -0.002 4.002 5 N -0.335 5.335 6 C -0.367 4.367 7 H 0.113 0.887 8 C -0.179 4.179 9 N -0.548 5.548 10 Si 0.716 3.284 11 H -0.213 1.213 12 H -0.208 1.208 13 H -0.233 1.233 14 C 0.002 3.998 15 C 0.028 3.972 16 H 0.120 0.880 17 N -0.345 5.345 18 C 0.353 3.647 19 O -0.405 6.405 20 C -0.042 4.042 21 C -0.113 4.113 22 C -0.027 4.027 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.103 4.103 27 C -0.112 4.112 28 C 0.158 3.842 29 O -0.279 6.279 30 N -0.205 5.205 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.245 0.755 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.270 14.953 26.875 31.602 hybrid contribution -0.539 1.351 0.061 1.455 sum -7.809 16.304 26.936 32.440 Atomic orbital electron populations 1.21746 0.94240 1.02367 1.01292 1.22430 0.95999 0.99358 0.95097 0.90282 1.21734 0.90500 0.93868 0.94107 1.44699 1.30465 1.52173 1.06126 1.18667 1.17510 1.12124 0.88394 0.88677 1.24793 0.99768 0.97309 0.96043 1.69903 1.52110 1.25258 1.07541 0.86989 0.78184 0.85309 0.77933 1.21258 1.20850 1.23259 1.21878 0.93376 0.98609 0.85981 1.22388 0.98810 0.93151 0.82888 0.88019 1.45780 1.72183 1.11105 1.05391 1.17747 0.77286 0.86969 0.82652 1.90829 1.50349 1.13526 1.85753 1.20641 1.01424 0.88229 0.93887 1.22246 0.96338 1.01908 0.90832 1.18075 0.98453 0.91742 0.94468 1.21079 0.99444 1.00739 0.90762 1.21068 0.97671 0.93388 0.99531 1.21032 0.99329 0.95507 0.97343 1.20961 0.97858 1.00001 0.91496 1.19048 1.03998 0.93891 0.94250 1.19091 0.94166 0.84592 0.86365 1.84746 1.34659 1.14895 1.93635 1.66834 1.13589 1.03741 1.36327 0.92758 0.92462 0.92062 0.95224 0.93550 0.92778 0.92574 0.95563 0.75526 0.82400 0.84332 0.85101 0.85206 0.84419 0.73738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.17 37.16 0.34 -1.61 16 2 C -0.11 -1.86 3.15 -88.77 -0.28 -2.14 16 3 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 4 C 0.12 2.75 4.55 -3.06 -0.01 2.73 16 5 N -0.61 -15.39 3.28 -170.07 -0.56 -15.95 16 6 C -0.24 -7.08 10.57 -15.06 -0.16 -7.24 16 7 H 0.10 2.96 8.06 -52.49 -0.42 2.53 16 8 C 0.02 0.57 5.43 -17.43 -0.09 0.48 16 9 N -0.90 -28.54 13.97 55.49 0.78 -27.76 16 10 Si 0.88 23.20 24.29 -169.99 -4.13 19.07 16 11 H -0.29 -7.16 6.72 56.52 0.38 -6.78 16 12 H -0.28 -7.29 6.74 56.52 0.38 -6.91 16 13 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 14 C 0.13 2.76 6.92 -2.53 -0.02 2.74 16 15 C 0.13 2.34 2.77 -65.78 -0.18 2.16 16 16 H 0.10 1.91 7.64 -51.93 -0.40 1.51 16 17 N -0.69 -10.47 5.22 -52.64 -0.27 -10.75 16 18 C 0.57 8.88 7.80 -12.29 -0.10 8.78 16 19 O -0.53 -9.71 16.01 5.32 0.09 -9.63 16 20 C 0.08 1.10 6.73 -83.09 -0.56 0.54 16 21 C -0.09 -1.03 9.41 -38.65 -0.36 -1.39 16 22 C -0.02 -0.21 5.74 -106.84 -0.61 -0.83 16 23 C -0.10 -0.71 9.81 -39.52 -0.39 -1.10 16 24 C -0.10 -0.53 9.95 -39.90 -0.40 -0.93 16 25 C -0.11 -0.60 9.95 -39.88 -0.40 -1.00 16 26 C -0.08 -0.54 9.58 -39.58 -0.38 -0.92 16 27 C -0.11 -0.98 5.76 -106.66 -0.61 -1.60 16 28 C 0.35 3.55 7.80 -16.56 -0.13 3.43 16 29 O -0.47 -3.63 12.83 -18.18 -0.23 -3.86 16 30 N -0.48 -5.91 9.47 -9.60 -0.09 -6.00 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.03 0.71 3.73 -51.93 -0.19 0.52 16 35 H 0.05 1.08 7.48 -51.93 -0.39 0.69 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.41 5.49 7.81 -40.82 -0.32 5.17 16 40 H 0.16 1.64 7.59 -52.48 -0.40 1.24 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 43 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.14 0.63 7.65 -52.49 -0.40 0.23 16 45 H 0.40 1.02 9.06 45.56 0.41 1.43 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -36.42 370.86 -8.26 -44.68 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.08 Total: 2.50 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -4.34 Total: 2.12 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.15 Total: -60.46 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.15 Total: -13.49 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.13 Total: 19.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.42 -8.26 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079843821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.988 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds