Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.63785 * 2 1 4 4 C 1.54336 * 111.00267 * 236.91906 * 2 1 3 5 5 N 1.47019 * 107.26498 * 219.60150 * 4 2 1 6 6 C 1.36933 * 125.65008 * 178.84821 * 5 4 2 7 7 H 1.07996 * 120.00433 * 191.17559 * 6 5 4 8 8 C 1.38817 * 119.99734 * 11.17295 * 6 5 4 9 9 N 1.31615 * 120.00189 * 206.17410 * 8 6 5 10 10 Si 1.86802 * 119.99879 * 26.17332 * 8 6 5 11 11 H 1.48497 * 109.47014 * 275.73300 * 10 8 6 12 12 H 1.48498 * 109.47123 * 35.73263 * 10 8 6 13 13 H 1.48500 * 109.46952 * 155.73635 * 10 8 6 14 14 C 1.47421 * 108.70310 * 358.58993 * 5 4 2 15 15 C 1.54903 * 104.83603 * 24.35285 * 14 5 4 16 16 H 1.09002 * 111.00772 * 81.10525 * 15 14 5 17 17 N 1.46502 * 111.00738 * 204.92055 * 15 14 5 18 18 C 1.34776 * 119.99729 * 273.54694 * 17 15 14 19 19 O 1.21547 * 120.00546 * 359.97438 * 18 17 15 20 20 C 1.47928 * 119.99813 * 179.97438 * 18 17 15 21 21 C 1.38263 * 119.24252 * 179.72279 * 20 18 17 22 22 C 1.40691 * 118.65119 * 179.78151 * 21 20 18 23 23 C 1.40239 * 122.05555 * 180.21598 * 22 21 20 24 24 C 1.36314 * 119.47713 * 180.29851 * 23 22 21 25 25 C 1.39247 * 120.94824 * 359.95637 * 24 23 22 26 26 C 1.36358 * 121.05742 * 0.04399 * 25 24 23 27 27 C 1.40046 * 119.59276 * 359.97386 * 26 25 24 28 28 C 1.41343 * 121.85574 * 179.97438 * 27 26 25 29 29 O 1.35495 * 119.95240 * 0.02562 * 28 27 26 30 30 N 1.31391 * 120.09768 * 180.02562 * 28 27 26 31 31 H 1.08996 * 109.47098 * 296.86240 * 1 2 3 32 32 H 1.09001 * 109.46512 * 56.86174 * 1 2 3 33 33 H 1.08997 * 109.47289 * 176.85868 * 1 2 3 34 34 H 1.08996 * 109.99015 * 100.12326 * 4 2 1 35 35 H 1.09001 * 109.77480 * 338.95659 * 4 2 1 36 36 H 0.97001 * 120.00637 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.37140 * 143.19711 * 14 5 4 38 38 H 1.09006 * 110.36336 * 265.40621 * 14 5 4 39 39 H 0.97002 * 120.00338 * 93.54907 * 17 15 14 40 40 H 1.08003 * 120.67251 * 0.02562 * 21 20 18 41 41 H 1.07996 * 120.26044 * 0.25768 * 23 22 21 42 42 H 1.08004 * 119.52425 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.47106 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.20666 * 179.97438 * 26 25 24 45 45 H 0.96702 * 114.00261 * 270.01659 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2495 -1.5470 -0.7353 6 6 4.0125 -2.3919 -1.4962 7 1 4.7341 -3.0414 -1.0232 8 6 3.8585 -2.4135 -2.8756 9 7 4.1583 -3.5006 -3.5544 10 14 3.2257 -0.8996 -3.7685 11 1 1.7413 -0.8867 -3.7301 12 1 3.7487 0.3214 -3.1046 13 1 3.6840 -0.9302 -5.1807 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7934 1.2152 16 1 1.4471 -1.6528 1.4391 17 7 2.2175 0.0728 2.3886 18 6 2.3113 -0.4692 3.6189 19 8 2.2805 -1.6767 3.7552 20 6 2.4517 0.4054 4.8037 21 6 2.5408 -0.1671 6.0591 22 6 2.6788 0.6761 7.1768 23 6 2.7799 0.1720 8.4815 24 6 2.9057 1.0374 9.5271 25 6 2.9362 2.4138 9.3179 26 6 2.8403 2.9367 8.0622 27 6 2.7095 2.0780 6.9636 28 6 2.6058 2.5681 5.6419 29 8 2.6323 3.9031 5.4114 30 7 2.4837 1.7312 4.6365 31 1 -0.3633 0.4643 0.9167 32 1 -0.3632 0.5618 -0.8606 33 1 -0.3634 -1.0261 -0.0563 34 1 2.3848 -0.0962 -1.9951 35 1 1.3217 -1.4702 -1.5822 36 1 4.0510 -3.5156 -4.5183 37 1 3.7993 -2.1364 1.2220 38 1 4.1944 -0.4422 0.8031 39 1 2.2416 1.0364 2.2800 40 1 2.5093 -1.2400 6.1789 41 1 2.7575 -0.8935 8.6566 42 1 2.9832 0.6500 10.5323 43 1 3.0372 3.0777 10.1636 44 1 2.8650 4.0064 7.9157 45 1 1.7609 4.3221 5.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079843821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = -12.201936 kcal Electronic energy + Delta-G solvation = -28834.418069 eV Core-core repulsion = 24816.976609 eV Total energy + Delta-G solvation = -4017.441460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.21880 -41.00827 -39.49064 -38.91501 -37.59288 -35.84138 -34.32497 -33.31915 -32.94546 -32.26775 -30.80415 -29.69964 -27.69122 -26.28295 -25.06387 -24.87694 -23.18061 -22.70004 -21.83141 -21.70165 -19.96588 -19.23429 -19.02513 -18.60908 -17.98700 -17.53327 -17.01423 -16.72833 -16.46150 -16.14816 -15.77945 -15.52259 -15.41734 -15.12233 -14.95639 -14.70149 -14.61423 -14.36818 -14.19703 -14.12281 -13.56048 -13.31407 -13.08090 -13.00787 -12.88868 -12.82979 -12.79893 -12.51080 -12.17609 -12.14345 -11.94835 -11.78131 -11.56470 -11.21036 -11.15131 -10.83440 -10.59867 -10.26122 -10.14426 -9.20582 -9.09743 -8.21555 -5.44612 -0.91673 -0.40989 0.75841 1.27949 1.28375 1.36357 1.46685 1.88380 2.20492 2.37736 2.38684 2.92221 2.96102 3.21534 3.34152 3.43819 3.52722 3.65540 3.74999 3.79945 3.90415 3.97232 4.22651 4.25429 4.27345 4.35831 4.39593 4.46898 4.60356 4.62206 4.65279 4.78917 4.88859 4.90163 4.96374 4.97691 5.00394 5.08797 5.29263 5.33115 5.37481 5.41804 5.45012 5.58273 5.82763 6.04291 6.29088 6.54392 6.67253 6.72168 7.06500 7.48095 8.01285 8.97942 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.002394 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.938254 B =11693.032277 C =12199.156005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.102 0.898 4 C 0.114 3.886 5 N -0.625 5.625 6 C -0.244 4.244 7 H 0.057 0.943 8 C -0.038 4.038 9 N -0.951 5.951 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.273 1.273 13 H -0.306 1.306 14 C 0.126 3.874 15 C 0.151 3.849 16 H 0.089 0.911 17 N -0.685 5.685 18 C 0.569 3.431 19 O -0.566 6.566 20 C 0.058 3.942 21 C -0.091 4.091 22 C -0.040 4.040 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.104 4.104 26 C -0.089 4.089 27 C -0.118 4.118 28 C 0.357 3.643 29 O -0.475 6.475 30 N -0.507 5.507 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.420 0.580 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 19.727 30.920 37.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.121 0.879 4 C -0.010 4.010 5 N -0.352 5.352 6 C -0.372 4.372 7 H 0.075 0.925 8 C -0.233 4.233 9 N -0.597 5.597 10 Si 0.783 3.217 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.235 1.235 14 C 0.000 4.000 15 C 0.044 3.956 16 H 0.107 0.893 17 N -0.335 5.335 18 C 0.356 3.644 19 O -0.445 6.445 20 C -0.066 4.066 21 C -0.112 4.112 22 C -0.045 4.045 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.109 4.109 27 C -0.121 4.121 28 C 0.161 3.839 29 O -0.285 6.285 30 N -0.229 5.229 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.258 0.742 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -8.871 18.903 29.858 36.436 hybrid contribution 0.033 0.157 -0.560 0.582 sum -8.838 19.061 29.299 36.053 Atomic orbital electron populations 1.21733 0.91447 1.02533 1.03384 1.22399 0.98115 0.99257 0.91561 0.87937 1.21914 0.89041 0.93643 0.96415 1.44747 1.31045 1.52173 1.07260 1.18579 1.17270 1.12278 0.89096 0.92486 1.25507 1.01128 0.99952 0.96716 1.70025 1.54569 1.27268 1.07833 0.85863 0.78824 0.80988 0.76011 1.18956 1.19954 1.23505 1.21972 0.96138 0.97770 0.84152 1.21966 0.95796 0.93547 0.84251 0.89319 1.45583 1.72171 1.11226 1.04527 1.18192 0.75989 0.86880 0.83377 1.90798 1.52044 1.15295 1.86391 1.20172 1.04807 0.88630 0.93035 1.22313 0.95760 1.02078 0.91053 1.18258 0.99360 0.91972 0.94899 1.21333 0.99700 1.02005 0.90143 1.21509 0.95387 0.93419 1.00463 1.21502 0.96797 0.95976 0.97863 1.21252 0.97649 1.00800 0.91181 1.19252 1.04063 0.94101 0.94695 1.19265 0.93064 0.85088 0.86474 1.84702 1.36606 1.13642 1.93571 1.66710 1.15366 1.03357 1.37458 0.90304 0.90742 0.92905 0.95675 0.94614 0.92685 0.95008 0.95071 0.74227 0.82748 0.83023 0.82032 0.81918 0.82366 0.71151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.17 71.98 0.66 -2.70 16 2 C -0.09 -3.02 3.15 -9.60 -0.03 -3.05 16 3 H 0.10 2.86 8.00 -2.39 -0.02 2.84 16 4 C 0.11 5.01 4.55 86.73 0.39 5.41 16 5 N -0.63 -32.51 3.28 -691.99 -2.27 -34.77 16 6 C -0.24 -15.05 10.57 84.04 0.89 -14.16 16 7 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 8 C -0.04 -2.36 5.43 84.86 0.46 -1.90 16 9 N -0.95 -62.22 13.97 21.65 0.30 -61.91 16 10 Si 0.95 48.50 24.29 68.60 1.67 50.17 16 11 H -0.26 -12.41 6.72 99.48 0.67 -11.74 16 12 H -0.27 -13.41 6.74 99.48 0.67 -12.74 16 13 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 14 C 0.13 5.62 6.92 86.85 0.60 6.22 16 15 C 0.15 5.33 2.77 46.38 0.13 5.46 16 16 H 0.09 3.41 7.64 -2.39 -0.02 3.39 16 17 N -0.68 -20.52 5.22 -438.74 -2.29 -22.81 16 18 C 0.57 18.29 7.80 86.81 0.68 18.97 16 19 O -0.57 -21.91 16.01 -3.86 -0.06 -21.98 16 20 C 0.06 1.54 6.73 41.44 0.28 1.82 16 21 C -0.09 -2.07 9.41 22.88 0.22 -1.85 16 22 C -0.04 -0.72 5.74 -21.30 -0.12 -0.84 16 23 C -0.11 -1.34 9.81 22.31 0.22 -1.12 16 24 C -0.09 -0.61 9.95 22.06 0.22 -0.39 16 25 C -0.10 -0.63 9.95 22.07 0.22 -0.41 16 26 C -0.09 -0.85 9.58 22.27 0.21 -0.64 16 27 C -0.12 -1.91 5.76 -21.19 -0.12 -2.03 16 28 C 0.36 6.68 7.80 85.52 0.67 7.34 16 29 O -0.47 -6.20 12.83 -87.96 -1.13 -7.32 16 30 N -0.51 -12.12 9.47 -297.68 -2.82 -14.94 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.03 1.16 3.73 -2.39 -0.01 1.15 16 35 H 0.04 1.64 7.48 -2.39 -0.02 1.62 16 36 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.42 10.79 7.81 -92.71 -0.72 10.07 16 40 H 0.15 3.43 7.59 -2.91 -0.02 3.40 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 43 H 0.16 -0.03 8.06 -2.91 -0.02 -0.06 16 44 H 0.16 0.81 7.65 -2.91 -0.02 0.78 16 45 H 0.43 1.01 9.06 -74.06 -0.67 0.34 16 Total: -1.00 -83.63 370.86 -1.45 -85.08 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -0.42 Total: 12.39 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 5.57 Total: 16.10 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -7.08 Total: -134.45 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.19 Total: -29.30 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.67 Total: 50.17 kcal Total: -83.63 -1.45 -85.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079843821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.883 kcal (2) G-P(sol) polarization free energy of solvation -83.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds