Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.88969 * 2 1 4 4 C 1.54912 * 111.00332 * 236.12251 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47311 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47271 * 120.00121 * 10 8 6 13 13 H 1.48501 * 109.46665 * 239.99715 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.08996 * 110.72159 * 96.17410 * 15 14 5 17 17 N 1.46504 * 110.87059 * 219.37229 * 15 14 5 18 18 C 1.34772 * 119.99964 * 268.61146 * 17 15 14 19 19 O 1.21697 * 120.00219 * 0.02562 * 18 17 15 20 20 C 1.46665 * 120.00223 * 179.97438 * 18 17 15 21 21 C 1.36719 * 125.86532 * 179.71600 * 20 18 17 22 22 C 1.39911 * 106.91793 * 179.85063 * 21 20 18 23 23 C 1.36507 * 107.01821 * 0.41189 * 22 21 20 24 24 C 1.47744 * 125.76361 * 179.72250 * 23 22 21 25 25 C 1.40031 * 120.93295 * 359.71809 * 24 23 22 26 26 C 1.37949 * 118.98605 * 179.75021 * 25 24 23 27 27 N 1.31934 * 120.90731 * 0.53856 * 26 25 24 28 28 C 1.31925 * 122.07532 * 359.73790 * 27 26 25 29 29 C 1.37952 * 120.90891 * 359.97309 * 28 27 26 30 30 O 1.34393 * 108.47055 * 359.74350 * 23 22 21 31 31 H 1.09002 * 109.46921 * 182.42116 * 1 2 3 32 32 H 1.09003 * 109.47131 * 302.42637 * 1 2 3 33 33 H 1.09001 * 109.47089 * 62.42194 * 1 2 3 34 34 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 35 35 H 1.08995 * 110.46379 * 323.80457 * 4 2 1 36 36 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 38 38 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 39 39 H 0.96997 * 119.99769 * 88.60981 * 17 15 14 40 40 H 1.08007 * 126.53691 * 359.97438 * 21 20 18 41 41 H 1.07997 * 126.48597 * 180.13167 * 22 21 20 42 42 H 1.08008 * 120.50905 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.54476 * 180.26971 * 26 25 24 44 44 H 1.08003 * 119.54860 * 180.02562 * 28 27 26 45 45 H 1.07998 * 120.50262 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4626 -1.5703 -1.6080 7 1 4.3304 -1.5193 -2.6787 8 6 5.6818 -1.9688 -1.0773 9 7 5.8427 -2.0313 0.2275 10 14 7.0946 -2.4148 -2.2151 11 1 6.6602 -2.2625 -3.6270 12 1 8.2459 -1.5148 -1.9511 13 1 7.5007 -3.8223 -1.9716 14 6 3.4674 -1.2745 0.6954 15 6 2.0861 -0.8085 1.2018 16 1 1.4468 -1.6638 1.4202 17 7 2.2247 0.0475 2.3827 18 6 2.1958 -0.4955 3.6158 19 8 2.0550 -1.6971 3.7484 20 6 2.3351 0.3613 4.7979 21 6 2.3175 -0.0594 6.0987 22 6 2.4850 1.0776 6.8966 23 6 2.5886 2.1459 6.0531 24 6 2.7707 3.5541 6.4615 25 6 2.8478 3.9069 7.8144 26 6 3.0233 5.2333 8.1504 27 7 3.1076 6.1631 7.2181 28 6 3.0343 5.8751 5.9328 29 6 2.8652 4.5740 5.5067 30 8 2.4966 1.7004 4.7885 31 1 -0.3633 -1.0268 0.0434 32 1 -0.3633 0.5511 0.8675 33 1 -0.3633 0.4758 -0.9109 34 1 2.1560 -0.1711 -2.0838 35 1 1.4524 -1.6697 -1.4051 36 1 6.6948 -2.3094 0.5983 37 1 3.6650 -2.2899 1.0390 38 1 4.2426 -0.6002 1.0596 39 1 2.3373 1.0051 2.2770 40 1 2.1991 -1.0758 6.4442 41 1 2.5206 1.1054 7.9756 42 1 2.7754 3.1516 8.5831 43 1 3.0884 5.5151 9.1910 44 1 3.1087 6.6687 5.2040 45 1 2.8064 4.3456 4.4528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079847714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 44.217651 kcal Electronic energy + Delta-G solvation = -28638.880498 eV Core-core repulsion = 24623.885575 eV Total energy + Delta-G solvation = -4014.994923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.91756 -40.32444 -39.47970 -37.55330 -34.29305 -33.88896 -33.12421 -32.66902 -31.62160 -30.40453 -29.65344 -27.74674 -25.69558 -24.91856 -24.07782 -23.59044 -22.14693 -21.59555 -20.59343 -20.11209 -19.79548 -18.53543 -17.40018 -16.93822 -16.58738 -16.48432 -16.15481 -15.93756 -15.01096 -14.94819 -14.38711 -14.31956 -14.13953 -14.11070 -13.77030 -13.48674 -13.25331 -13.15730 -12.99136 -12.82634 -12.70389 -12.02382 -12.00304 -11.74038 -11.38733 -11.05855 -10.93755 -10.81114 -10.74234 -10.43999 -10.18226 -10.10616 -10.00315 -9.94829 -9.92042 -9.71862 -9.60928 -8.74184 -8.62037 -8.40618 -6.86088 -5.71342 -3.06606 0.11301 0.71673 1.31971 2.25207 2.27775 3.22843 3.33472 3.39825 3.44889 3.46338 3.47768 4.01799 4.05668 4.38852 4.48980 4.54069 4.60405 4.71575 4.80819 5.03560 5.13236 5.22906 5.27086 5.36020 5.39350 5.41869 5.48174 5.52968 5.69957 5.70299 5.74358 5.93509 5.94960 6.10079 6.10921 6.13136 6.21074 6.28839 6.43035 6.55182 6.60132 6.64949 6.88407 7.47934 7.54826 7.54932 7.73443 7.81656 8.22069 8.28399 9.19434 9.80263 10.44609 11.39590 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.002535 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.693572 B =11040.998911 C =11501.672811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.118 3.882 16 H 0.093 0.907 17 N -0.697 5.697 18 C 0.598 3.402 19 O -0.513 6.513 20 C -0.043 4.043 21 C -0.129 4.129 22 C -0.181 4.181 23 C 0.034 3.966 24 C 0.031 3.969 25 C -0.153 4.153 26 C 0.104 3.896 27 N -0.485 5.485 28 C 0.106 3.894 29 C -0.155 4.155 30 O -0.153 6.153 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.401 0.599 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 13.364 14.805 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.098 0.902 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.013 3.987 16 H 0.111 0.889 17 N -0.346 5.346 18 C 0.382 3.618 19 O -0.390 6.390 20 C -0.096 4.096 21 C -0.149 4.149 22 C -0.200 4.200 23 C -0.018 4.018 24 C 0.022 3.978 25 C -0.172 4.172 26 C -0.052 4.052 27 N -0.194 5.194 28 C -0.051 4.051 29 C -0.175 4.175 30 O -0.049 6.049 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.179 0.821 44 H 0.179 0.821 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.950 13.466 14.845 22.377 hybrid contribution 0.866 -0.828 -0.681 1.378 sum -9.084 12.639 14.164 21.045 Atomic orbital electron populations 1.21704 0.94929 1.01830 1.01081 1.22626 0.94928 0.99562 0.96226 0.90370 1.21587 0.87598 0.95091 0.94286 1.44413 1.07992 1.79187 1.01683 1.19096 0.89296 1.38461 0.88946 0.90204 1.24837 0.97922 1.01682 0.96034 1.69973 1.24122 1.53317 1.09217 0.86038 0.82329 0.77794 0.79551 1.20481 1.21783 1.21722 1.21484 0.89779 1.00499 0.83550 1.22649 1.00768 0.92791 0.82477 0.88881 1.45858 1.71987 1.11428 1.05282 1.16495 0.77804 0.86210 0.81252 1.90907 1.50174 1.12753 1.85206 1.22526 1.10160 0.80029 0.96910 1.21886 1.01512 1.00869 0.90674 1.21772 1.06485 0.90921 1.00858 1.20435 1.06472 0.93223 0.81673 1.18084 0.97804 0.88105 0.93766 1.22109 1.01676 0.98578 0.94882 1.22708 0.94837 0.88235 0.99444 1.67652 1.12013 1.37840 1.01884 1.22758 0.94465 0.95219 0.92625 1.22377 1.00510 0.93515 1.01101 1.84063 1.69763 1.22264 1.28806 0.92518 0.93159 0.92617 0.93870 0.95910 0.93750 0.93230 0.93040 0.76458 0.81611 0.82225 0.84004 0.82056 0.82077 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.30 37.16 0.35 -1.45 16 2 C -0.11 -1.86 3.27 -88.47 -0.29 -2.15 16 3 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 4 C 0.14 2.81 6.70 -2.53 -0.02 2.80 16 5 N -0.61 -15.39 3.39 -170.07 -0.58 -15.97 16 6 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.17 4.24 5.13 -3.06 -0.02 4.23 16 15 C 0.12 2.21 2.78 -66.09 -0.18 2.03 16 16 H 0.09 1.83 7.42 -51.93 -0.39 1.45 16 17 N -0.70 -11.44 5.11 -53.34 -0.27 -11.71 16 18 C 0.60 10.30 7.79 -12.86 -0.10 10.20 16 19 O -0.51 -10.50 16.50 5.19 0.09 -10.41 16 20 C -0.04 -0.62 7.12 -36.73 -0.26 -0.88 16 21 C -0.13 -1.60 10.59 -39.50 -0.42 -2.02 16 22 C -0.18 -1.83 10.26 -39.58 -0.41 -2.24 16 23 C 0.03 0.38 7.05 -36.32 -0.26 0.12 16 24 C 0.03 0.29 5.91 -104.67 -0.62 -0.33 16 25 C -0.15 -1.14 9.64 -39.02 -0.38 -1.51 16 26 C 0.10 0.78 11.17 -17.61 -0.20 0.58 16 27 N -0.48 -4.56 10.34 -13.35 -0.14 -4.70 16 28 C 0.11 0.89 11.17 -17.62 -0.20 0.69 16 29 C -0.16 -1.40 9.82 -39.01 -0.38 -1.78 16 30 O -0.15 -1.99 10.23 3.84 0.04 -1.95 16 31 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.05 1.41 7.51 -51.93 -0.39 1.02 16 38 H 0.05 1.40 7.27 -51.93 -0.38 1.02 16 39 H 0.40 5.65 8.31 -40.82 -0.34 5.31 16 40 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.16 1.07 7.33 -52.49 -0.38 0.69 16 42 H 0.14 0.69 7.12 -52.48 -0.37 0.32 16 43 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.14 1.17 7.99 -52.49 -0.42 0.75 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -34.12 382.08 -9.19 -43.31 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.01 Total: 3.90 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -3.62 Total: 1.42 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.42 Total: -59.25 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.12 Total: -12.36 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.12 -9.19 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079847714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.525 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds