Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.88969 * 2 1 4 4 C 1.54912 * 111.00332 * 236.12251 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47311 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47271 * 120.00121 * 10 8 6 13 13 H 1.48501 * 109.46665 * 239.99715 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.08996 * 110.72159 * 96.17410 * 15 14 5 17 17 N 1.46504 * 110.87059 * 219.37229 * 15 14 5 18 18 C 1.34772 * 119.99964 * 268.61146 * 17 15 14 19 19 O 1.21697 * 120.00219 * 0.02562 * 18 17 15 20 20 C 1.46665 * 120.00223 * 179.97438 * 18 17 15 21 21 C 1.36719 * 125.86532 * 179.71600 * 20 18 17 22 22 C 1.39911 * 106.91793 * 179.85063 * 21 20 18 23 23 C 1.36507 * 107.01821 * 0.41189 * 22 21 20 24 24 C 1.47744 * 125.76361 * 179.72250 * 23 22 21 25 25 C 1.40031 * 120.93295 * 359.71809 * 24 23 22 26 26 C 1.37949 * 118.98605 * 179.75021 * 25 24 23 27 27 N 1.31934 * 120.90731 * 0.53856 * 26 25 24 28 28 C 1.31925 * 122.07532 * 359.73790 * 27 26 25 29 29 C 1.37952 * 120.90891 * 359.97309 * 28 27 26 30 30 O 1.34393 * 108.47055 * 359.74350 * 23 22 21 31 31 H 1.09002 * 109.46921 * 182.42116 * 1 2 3 32 32 H 1.09003 * 109.47131 * 302.42637 * 1 2 3 33 33 H 1.09001 * 109.47089 * 62.42194 * 1 2 3 34 34 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 35 35 H 1.08995 * 110.46379 * 323.80457 * 4 2 1 36 36 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 38 38 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 39 39 H 0.96997 * 119.99769 * 88.60981 * 17 15 14 40 40 H 1.08007 * 126.53691 * 359.97438 * 21 20 18 41 41 H 1.07997 * 126.48597 * 180.13167 * 22 21 20 42 42 H 1.08008 * 120.50905 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.54476 * 180.26971 * 26 25 24 44 44 H 1.08003 * 119.54860 * 180.02562 * 28 27 26 45 45 H 1.07998 * 120.50262 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4626 -1.5703 -1.6080 7 1 4.3304 -1.5193 -2.6787 8 6 5.6818 -1.9688 -1.0773 9 7 5.8427 -2.0313 0.2275 10 14 7.0946 -2.4148 -2.2151 11 1 6.6602 -2.2625 -3.6270 12 1 8.2459 -1.5148 -1.9511 13 1 7.5007 -3.8223 -1.9716 14 6 3.4674 -1.2745 0.6954 15 6 2.0861 -0.8085 1.2018 16 1 1.4468 -1.6638 1.4202 17 7 2.2247 0.0475 2.3827 18 6 2.1958 -0.4955 3.6158 19 8 2.0550 -1.6971 3.7484 20 6 2.3351 0.3613 4.7979 21 6 2.3175 -0.0594 6.0987 22 6 2.4850 1.0776 6.8966 23 6 2.5886 2.1459 6.0531 24 6 2.7707 3.5541 6.4615 25 6 2.8478 3.9069 7.8144 26 6 3.0233 5.2333 8.1504 27 7 3.1076 6.1631 7.2181 28 6 3.0343 5.8751 5.9328 29 6 2.8652 4.5740 5.5067 30 8 2.4966 1.7004 4.7885 31 1 -0.3633 -1.0268 0.0434 32 1 -0.3633 0.5511 0.8675 33 1 -0.3633 0.4758 -0.9109 34 1 2.1560 -0.1711 -2.0838 35 1 1.4524 -1.6697 -1.4051 36 1 6.6948 -2.3094 0.5983 37 1 3.6650 -2.2899 1.0390 38 1 4.2426 -0.6002 1.0596 39 1 2.3373 1.0051 2.2770 40 1 2.1991 -1.0758 6.4442 41 1 2.5206 1.1054 7.9756 42 1 2.7754 3.1516 8.5831 43 1 3.0884 5.5151 9.1910 44 1 3.1087 6.6687 5.2040 45 1 2.8064 4.3456 4.4528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079847714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 21.670439 kcal Electronic energy + Delta-G solvation = -28639.858219 eV Core-core repulsion = 24623.885575 eV Total energy + Delta-G solvation = -4015.972644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.86237 -41.06770 -40.81551 -39.16337 -35.79361 -34.90733 -34.30042 -34.00132 -32.22241 -32.20607 -30.74860 -29.30375 -27.41674 -26.05458 -25.07963 -24.66180 -23.28604 -22.47848 -22.01582 -21.65214 -21.13513 -19.57349 -18.92096 -18.34227 -17.64222 -17.50165 -17.09621 -16.92324 -16.71822 -16.06126 -15.81732 -15.50629 -15.39531 -14.88579 -14.85503 -14.70871 -14.59662 -14.22678 -14.10171 -14.08800 -13.77487 -13.75853 -13.36438 -13.08277 -12.91421 -12.64238 -12.60036 -12.18587 -12.15735 -11.89365 -11.71929 -11.68737 -11.52344 -11.43577 -11.09942 -10.78606 -10.57250 -10.20540 -10.18819 -9.35844 -8.95363 -7.87170 -5.25018 -0.70716 0.13495 0.36635 1.28988 1.42746 1.43496 1.45173 1.55618 1.95551 2.07325 2.47578 2.84264 3.15352 3.31767 3.49909 3.54859 3.65603 3.73825 3.75132 3.93912 3.99297 4.00039 4.05319 4.11364 4.40631 4.41960 4.48075 4.57079 4.58646 4.67800 4.73986 4.83740 4.86102 4.94334 5.01417 5.03387 5.06407 5.07504 5.24864 5.27186 5.42310 5.46291 5.51609 5.63914 5.68029 5.73284 6.13810 6.36488 6.93457 6.95114 7.05069 7.72882 8.36525 9.22441 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.002535 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.693572 B =11040.998911 C =11501.672811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.090 0.910 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.090 0.910 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.292 1.292 13 H -0.296 1.296 14 C 0.187 3.813 15 C 0.134 3.866 16 H 0.084 0.916 17 N -0.690 5.690 18 C 0.597 3.403 19 O -0.556 6.556 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.175 4.175 23 C 0.040 3.960 24 C 0.007 3.993 25 C -0.141 4.141 26 C 0.100 3.900 27 N -0.506 5.506 28 C 0.098 3.902 29 C -0.165 4.165 30 O -0.162 6.162 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.244 0.756 37 H -0.005 1.005 38 H 0.017 0.983 39 H 0.413 0.587 40 H 0.173 0.827 41 H 0.200 0.800 42 H 0.173 0.827 43 H 0.193 0.807 44 H 0.180 0.820 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 15.500 15.753 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 H 0.108 0.892 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.809 3.191 11 H -0.184 1.184 12 H -0.219 1.219 13 H -0.223 1.223 14 C 0.061 3.939 15 C 0.028 3.972 16 H 0.102 0.898 17 N -0.339 5.339 18 C 0.384 3.616 19 O -0.437 6.437 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.194 4.194 23 C -0.011 4.011 24 C -0.001 4.001 25 C -0.161 4.161 26 C -0.056 4.056 27 N -0.215 5.215 28 C -0.057 4.057 29 C -0.184 4.184 30 O -0.058 6.058 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.013 0.987 38 H 0.035 0.965 39 H 0.250 0.750 40 H 0.190 0.810 41 H 0.217 0.783 42 H 0.190 0.810 43 H 0.210 0.790 44 H 0.197 0.803 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.181 15.648 15.761 24.865 hybrid contribution 1.231 -1.390 -0.884 2.056 sum -9.950 14.258 14.877 22.883 Atomic orbital electron populations 1.21658 0.91554 1.02361 1.03102 1.22554 0.97433 0.98867 0.92541 0.89169 1.21861 0.85177 0.95908 0.96278 1.44735 1.09680 1.79182 1.01861 1.19557 0.90069 1.37317 0.89845 0.89216 1.25745 1.00757 1.02453 0.97464 1.70237 1.24108 1.54779 1.11142 0.84967 0.78818 0.76743 0.78552 1.18419 1.21923 1.22286 1.21104 0.92342 0.96735 0.83729 1.22228 0.97014 0.93678 0.84284 0.89817 1.45691 1.71884 1.11721 1.04604 1.16834 0.76581 0.86121 0.82020 1.90870 1.52161 1.14644 1.85998 1.21954 1.14305 0.80721 0.96294 1.22187 0.99503 1.02016 0.90259 1.22157 1.05568 0.89199 1.02504 1.20967 1.04697 0.94352 0.81108 1.18275 0.99537 0.87233 0.95028 1.22446 0.99817 0.99356 0.94474 1.23272 0.93737 0.88019 1.00540 1.67698 1.12458 1.38898 1.02460 1.23057 0.94220 0.95505 0.92944 1.22502 1.00707 0.93909 1.01327 1.84023 1.70233 1.21446 1.30105 0.92767 0.91502 0.90231 0.92483 0.95296 0.94677 0.98719 0.96523 0.75005 0.80994 0.78301 0.81006 0.79032 0.80284 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.30 71.98 0.67 -2.35 16 2 C -0.09 -2.98 3.27 -9.40 -0.03 -3.01 16 3 H 0.09 2.67 8.01 -2.38 -0.02 2.65 16 4 C 0.13 5.22 6.70 86.86 0.58 5.81 16 5 N -0.63 -32.81 3.39 -691.97 -2.35 -35.16 16 6 C -0.24 -13.57 10.28 84.03 0.86 -12.70 16 7 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 9 N -0.95 -60.02 10.31 21.65 0.22 -59.80 16 10 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 14 C 0.19 9.79 5.13 86.73 0.44 10.23 16 15 C 0.13 5.20 2.78 46.18 0.13 5.32 16 16 H 0.08 3.44 7.42 -2.39 -0.02 3.42 16 17 N -0.69 -23.41 5.11 -440.88 -2.25 -25.66 16 18 C 0.60 21.53 7.79 86.44 0.67 22.20 16 19 O -0.56 -24.10 16.50 -4.34 -0.07 -24.17 16 20 C -0.08 -2.35 7.12 24.12 0.17 -2.18 16 21 C -0.12 -2.87 10.59 22.32 0.24 -2.64 16 22 C -0.18 -3.12 10.26 22.27 0.23 -2.89 16 23 C 0.04 0.84 7.05 24.38 0.17 1.01 16 24 C 0.01 0.13 5.91 -19.89 -0.12 0.01 16 25 C -0.14 -1.65 9.64 22.64 0.22 -1.43 16 26 C 0.10 1.20 11.17 84.61 0.95 2.15 16 27 N -0.51 -8.47 10.34 -196.16 -2.03 -10.50 16 28 C 0.10 1.52 11.17 84.61 0.95 2.46 16 29 C -0.16 -2.78 9.82 22.64 0.22 -2.55 16 30 O -0.16 -4.16 10.23 -9.18 -0.09 -4.26 16 31 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.03 1.12 8.04 -2.39 -0.02 1.10 16 36 H 0.24 15.02 8.31 -92.71 -0.77 14.24 16 37 H -0.01 -0.34 7.51 -2.39 -0.02 -0.36 16 38 H 0.02 0.97 7.27 -2.39 -0.02 0.95 16 39 H 0.41 11.80 8.31 -92.71 -0.77 11.03 16 40 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.20 1.80 7.33 -2.91 -0.02 1.77 16 42 H 0.17 0.87 7.12 -2.91 -0.02 0.85 16 43 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.14 2.29 7.99 -2.91 -0.02 2.26 16 Total: -1.00 -79.42 382.08 2.52 -76.90 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.25 Total: 18.06 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.82 Total: 15.72 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -6.41 Total: -131.12 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.17 Total: -28.43 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -79.42 2.52 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079847714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.570 kcal (2) G-P(sol) polarization free energy of solvation -79.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds