Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.88804 * 2 1 4 4 C 1.54912 * 110.99964 * 236.11619 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00576 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00326 * 10 8 6 13 13 H 1.48498 * 109.47210 * 150.00037 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21487 * 120.00365 * 359.97438 * 18 17 15 20 20 C 1.48291 * 120.00347 * 180.02562 * 18 17 15 21 21 C 1.35669 * 118.87204 * 179.97438 * 20 18 17 22 22 C 1.42060 * 119.93301 * 179.97438 * 21 20 18 23 23 O 1.21930 * 121.07162 * 180.02562 * 22 21 20 24 24 C 1.47223 * 117.86195 * 359.97438 * 22 21 20 25 25 C 1.39588 * 121.35795 * 180.02562 * 24 22 21 26 26 C 1.36635 * 119.69413 * 180.02562 * 25 24 22 27 27 C 1.38885 * 120.55819 * 359.91312 * 26 25 24 28 28 C 1.37712 * 120.72024 * 0.06720 * 27 26 25 29 29 C 1.39284 * 119.71941 * 359.97438 * 28 27 26 30 30 N 1.36473 * 118.86546 * 359.73126 * 20 18 17 31 31 H 0.96999 * 119.18407 * 0.02562 * 30 20 18 32 32 H 1.09001 * 109.47544 * 182.42713 * 1 2 3 33 33 H 1.09005 * 109.46735 * 302.42854 * 1 2 3 34 34 H 1.09002 * 109.47189 * 62.42599 * 1 2 3 35 35 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 36 36 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 37 37 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 38 38 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 39 39 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 40 40 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 41 41 H 1.07992 * 120.03694 * 0.02562 * 21 20 18 42 42 H 1.08005 * 120.15256 * 359.97438 * 25 24 22 43 43 H 1.08000 * 119.71999 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.63770 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.14103 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0851 -0.8063 -1.2006 5 7 3.4270 -1.2429 -0.7738 6 6 4.4639 -1.5663 -1.6077 7 1 4.3332 -1.5110 -2.6784 8 6 5.6833 -1.9643 -1.0771 9 7 5.8427 -2.0312 0.2278 10 14 7.0975 -2.4061 -2.2147 11 1 7.0437 -3.8559 -2.5312 12 1 6.9865 -1.6209 -3.4702 13 1 8.3863 -2.0926 -1.5470 14 6 3.4656 -1.2798 0.6955 15 6 2.0861 -0.8085 1.2020 16 1 1.4467 -1.6638 1.4204 17 7 2.2287 0.0486 2.3815 18 6 2.2004 -0.4929 3.6153 19 8 2.0563 -1.6918 3.7494 20 6 2.3441 0.3746 4.8094 21 6 2.3119 -0.1947 6.0404 22 6 2.4480 0.6150 7.1997 23 8 2.4225 0.1252 8.3160 24 6 2.6219 2.0646 7.0099 25 6 2.7630 2.9278 8.0977 26 6 2.9220 4.2677 7.8823 27 6 2.9463 4.7772 6.5905 28 6 2.8094 3.9438 5.5029 29 6 2.6452 2.5746 5.6985 30 7 2.5093 1.7176 4.6320 31 1 2.5290 2.0768 3.7312 32 1 -0.3634 -1.0267 0.0435 33 1 -0.3633 0.5511 0.8675 34 1 -0.3634 0.4757 -0.9109 35 1 2.1559 -0.1713 -2.0837 36 1 1.4524 -1.6699 -1.4049 37 1 6.6947 -2.3097 0.5986 38 1 3.6600 -2.2970 1.0358 39 1 4.2423 -0.6091 1.0628 40 1 2.3433 1.0059 2.2746 41 1 2.1837 -1.2625 6.1390 42 1 2.7457 2.5386 9.1050 43 1 3.0308 4.9360 8.7237 44 1 3.0732 5.8388 6.4374 45 1 2.8292 4.3501 4.5024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080071029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = 5.589310 kcal Electronic energy + Delta-G solvation = -29136.116980 eV Core-core repulsion = 25119.447006 eV Total energy + Delta-G solvation = -4016.669974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51345 -39.83868 -38.22515 -37.92165 -37.08920 -34.26954 -32.84452 -32.34003 -31.12078 -30.49101 -30.11247 -28.10794 -25.82601 -25.27460 -23.98333 -23.50994 -22.62877 -21.19998 -20.40390 -19.96561 -18.85873 -18.54735 -18.29630 -17.02277 -16.36226 -16.09278 -15.75525 -15.60951 -15.11473 -14.98289 -14.44875 -14.40670 -14.33795 -13.97367 -13.77950 -13.46896 -13.41905 -13.33415 -12.95116 -12.86389 -12.35691 -12.21453 -12.07187 -11.84175 -11.64334 -11.49462 -11.13011 -10.89148 -10.83121 -10.55683 -10.25779 -10.12453 -10.03643 -9.80394 -9.69348 -9.68750 -9.36565 -8.85920 -8.68445 -8.04127 -6.94009 -5.78148 -3.13662 0.25292 0.62177 1.25832 2.38338 2.63026 2.84340 3.05906 3.36041 3.40832 3.43181 3.74557 4.06140 4.27407 4.40103 4.45013 4.53796 4.76523 4.83452 4.89849 4.95192 5.15568 5.21051 5.26706 5.45851 5.50743 5.56748 5.57379 5.59010 5.79341 5.83343 5.86904 5.97988 6.01062 6.04606 6.16047 6.21061 6.29239 6.32578 6.42196 6.49735 6.54935 6.65962 6.76696 7.27362 7.45407 7.54400 7.67422 7.72986 8.01273 8.15996 9.12442 9.73216 10.36719 11.32770 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.002767 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.406856 B =10116.438812 C =10520.109860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.233 4.233 7 H 0.080 0.920 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.913 3.087 11 H -0.288 1.288 12 H -0.281 1.281 13 H -0.290 1.290 14 C 0.172 3.828 15 C 0.118 3.882 16 H 0.096 0.904 17 N -0.702 5.702 18 C 0.551 3.449 19 O -0.497 6.497 20 C 0.161 3.839 21 C -0.237 4.237 22 C 0.419 3.581 23 O -0.486 6.486 24 C -0.203 4.203 25 C -0.027 4.027 26 C -0.164 4.164 27 C -0.053 4.053 28 C -0.175 4.175 29 C 0.204 3.796 30 N -0.605 5.605 31 H 0.416 0.584 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.391 0.609 41 H 0.166 0.834 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 15.978 9.527 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.361 4.361 7 H 0.098 0.902 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.215 1.215 12 H -0.207 1.207 13 H -0.217 1.217 14 C 0.046 3.954 15 C 0.013 3.987 16 H 0.114 0.886 17 N -0.353 5.353 18 C 0.333 3.667 19 O -0.371 6.371 20 C 0.051 3.949 21 C -0.264 4.264 22 C 0.306 3.694 23 O -0.368 6.368 24 C -0.207 4.207 25 C -0.045 4.045 26 C -0.183 4.183 27 C -0.072 4.072 28 C -0.196 4.196 29 C 0.101 3.899 30 N -0.219 5.219 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.225 0.775 41 H 0.183 0.817 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.801 14.687 10.220 20.401 hybrid contribution 1.005 0.461 -1.168 1.608 sum -8.795 15.148 9.052 19.717 Atomic orbital electron populations 1.21714 0.94822 1.01981 1.01110 1.22632 0.94981 0.99450 0.96259 0.90432 1.21590 0.87623 0.95147 0.94245 1.44390 1.07920 1.79290 1.01596 1.19040 0.89190 1.38894 0.88932 0.90236 1.24833 0.97926 1.01520 0.96052 1.69946 1.24361 1.53104 1.09236 0.86107 0.81815 0.78319 0.79424 1.21495 1.20679 1.21665 1.21498 0.89607 1.00579 0.83689 1.22697 1.01004 0.92753 0.82199 0.88611 1.45899 1.72837 1.10837 1.05758 1.18021 0.78509 0.87707 0.82424 1.90863 1.47509 1.13466 1.85219 1.20269 0.96128 0.82438 0.96044 1.22471 1.10310 1.03247 0.90417 1.18508 0.74794 0.87056 0.89072 1.90710 1.42865 1.76309 1.26897 1.20367 1.11592 0.96784 0.91987 1.20872 0.92416 0.92631 0.98594 1.20877 1.04670 0.95431 0.97316 1.21136 0.94345 0.99826 0.91933 1.20715 1.08082 0.90303 1.00482 1.17887 0.95439 0.90032 0.86563 1.41245 1.66814 1.04661 1.09157 0.74659 0.92415 0.93192 0.92531 0.93785 0.95850 0.93618 0.93140 0.93024 0.77505 0.81657 0.84383 0.85250 0.84987 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.30 37.16 0.35 -1.25 16 2 C -0.11 -1.66 3.27 -88.47 -0.29 -1.95 16 3 H 0.08 1.05 8.01 -51.93 -0.42 0.63 16 4 C 0.14 2.63 6.70 -2.53 -0.02 2.61 16 5 N -0.61 -14.62 3.39 -170.06 -0.58 -15.20 16 6 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 10 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.17 3.97 5.13 -3.06 -0.02 3.96 16 15 C 0.12 2.00 2.78 -66.09 -0.18 1.82 16 16 H 0.10 1.74 7.42 -51.93 -0.39 1.36 16 17 N -0.70 -9.57 5.10 -52.83 -0.27 -9.84 16 18 C 0.55 8.33 7.80 -12.12 -0.09 8.24 16 19 O -0.50 -9.51 15.82 5.38 0.09 -9.43 16 20 C 0.16 2.06 6.75 -82.59 -0.56 1.51 16 21 C -0.24 -3.41 9.49 -39.04 -0.37 -3.78 16 22 C 0.42 6.17 6.97 -34.47 -0.24 5.93 16 23 O -0.49 -8.40 17.34 4.98 0.09 -8.32 16 24 C -0.20 -2.44 5.89 -104.80 -0.62 -3.06 16 25 C -0.03 -0.27 9.61 -39.66 -0.38 -0.65 16 26 C -0.16 -1.24 9.97 -39.92 -0.40 -1.63 16 27 C -0.05 -0.35 10.01 -39.53 -0.40 -0.75 16 28 C -0.18 -1.29 9.91 -39.38 -0.39 -1.68 16 29 C 0.20 2.04 6.66 -84.00 -0.56 1.48 16 30 N -0.60 -5.81 5.32 -7.43 -0.04 -5.84 16 31 H 0.42 2.81 6.78 -40.82 -0.28 2.53 16 32 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.05 1.38 7.52 -51.93 -0.39 0.99 16 39 H 0.05 1.31 7.25 -51.93 -0.38 0.93 16 40 H 0.39 3.92 6.69 -40.82 -0.27 3.64 16 41 H 0.17 2.50 7.48 -52.49 -0.39 2.11 16 42 H 0.14 1.35 7.78 -52.48 -0.41 0.94 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -34.49 373.99 -9.79 -44.27 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.84 Total: 3.98 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -4.42 Total: 4.10 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.31 Total: -56.94 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.49 -9.79 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080071029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.862 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds