Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.99726 * 2 1 4 4 C 1.54329 * 109.88300 * 238.90715 * 2 1 3 5 5 H 1.09000 * 110.87306 * 336.82424 * 4 2 1 6 6 N 1.46495 * 110.71982 * 100.02382 * 4 2 1 7 7 C 1.34778 * 120.00240 * 199.97166 * 6 4 2 8 8 O 1.21592 * 119.99813 * 0.02562 * 7 6 4 9 9 C 1.47555 * 120.00230 * 179.97438 * 7 6 4 10 10 C 1.38904 * 120.29946 * 0.02562 * 9 7 6 11 11 C 1.40564 * 118.06639 * 180.02562 * 10 9 7 12 12 C 1.40541 * 121.11439 * 180.02562 * 11 10 9 13 13 C 1.36146 * 119.63603 * 179.97438 * 12 11 10 14 14 C 1.39335 * 120.82791 * 359.97438 * 13 12 11 15 15 C 1.36142 * 121.07932 * 0.02562 * 14 13 12 16 16 C 1.40530 * 119.82788 * 359.97438 * 15 14 13 17 17 N 1.33817 * 120.75188 * 180.02562 * 16 15 14 18 18 C 1.31382 * 121.66013 * 180.02562 * 17 16 15 19 19 O 1.35407 * 119.31605 * 179.97438 * 18 17 16 20 20 C 1.55153 * 102.94176 * 218.38725 * 4 2 1 21 21 C 1.54911 * 101.58247 * 35.50217 * 20 4 2 22 22 N 1.47020 * 109.88426 * 121.09738 * 2 1 3 23 23 C 1.36938 * 125.64620 * 298.32384 * 22 2 1 24 24 H 1.07991 * 120.00319 * 0.02562 * 23 22 2 25 25 C 1.38818 * 119.99744 * 180.02562 * 23 22 2 26 26 N 1.31622 * 119.99887 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00025 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46849 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47045 * 119.99697 * 27 25 23 30 30 H 1.48500 * 109.46777 * 240.00141 * 27 25 23 31 31 H 1.09003 * 109.47201 * 181.09360 * 1 2 3 32 32 H 1.09002 * 109.47541 * 301.09295 * 1 2 3 33 33 H 1.09000 * 109.47537 * 61.09972 * 1 2 3 34 34 H 0.97007 * 120.00115 * 19.97809 * 6 4 2 35 35 H 1.07996 * 120.96796 * 0.04146 * 10 9 7 36 36 H 1.08002 * 120.18580 * 359.95198 * 12 11 10 37 37 H 1.08004 * 119.59068 * 179.97438 * 13 12 11 38 38 H 1.08002 * 119.45791 * 179.71856 * 14 13 12 39 39 H 1.08003 * 120.08455 * 179.97438 * 15 14 13 40 40 H 0.96700 * 113.99703 * 269.97737 * 19 18 17 41 41 H 1.08999 * 111.00911 * 153.57418 * 20 4 2 42 42 H 1.08999 * 111.00773 * 277.38964 * 20 4 2 43 43 H 1.08996 * 110.36922 * 81.82840 * 21 20 4 44 44 H 1.09001 * 110.37182 * 204.15081 * 21 20 4 45 45 H 0.97001 * 119.99832 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3064 -1.4458 -1.6212 6 7 2.4554 0.1961 -2.2875 7 6 2.5559 -0.2158 -3.5668 8 8 2.3137 -1.3722 -3.8540 9 6 2.9588 0.7368 -4.6192 10 6 3.2364 2.0594 -4.2983 11 6 3.6155 2.9266 -5.3376 12 6 3.9114 4.2771 -5.0851 13 6 4.2760 5.0902 -6.1144 14 6 4.3602 4.6003 -7.4160 15 6 4.0805 3.2977 -7.6962 16 6 3.7006 2.4262 -6.6614 17 7 3.4221 1.1423 -6.9157 18 6 3.0647 0.3121 -5.9622 19 8 2.7932 -0.9775 -6.2732 20 6 3.2876 -1.5141 -0.6925 21 6 2.8145 -1.8794 0.7367 22 7 2.0300 -0.7141 1.1839 23 6 1.8049 -0.3556 2.4862 24 1 1.2142 0.5200 2.7109 25 6 2.3362 -1.1179 3.5176 26 7 3.0558 -2.1854 3.2437 27 14 2.0286 -0.6294 5.2942 28 1 1.1958 0.5995 5.3325 29 1 1.3198 -1.7303 5.9946 30 1 3.3262 -0.3687 5.9675 31 1 -0.3634 -1.0275 0.0196 32 1 -0.3634 0.5307 0.8800 33 1 -0.3634 0.4966 -0.8997 34 1 2.6483 1.1188 -2.0585 35 1 3.1635 2.4112 -3.2798 36 1 3.8496 4.6678 -4.0801 37 1 4.5028 6.1280 -5.9195 38 1 4.6472 5.2661 -8.2166 39 1 4.1506 2.9352 -8.7111 40 1 1.8669 -1.1413 -6.4973 41 1 3.4852 -2.4109 -1.2797 42 1 4.1655 -0.8690 -0.6611 43 1 2.1887 -2.7715 0.7127 44 1 3.6716 -2.0338 1.3922 45 1 3.4273 -2.7179 3.9644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088783271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 14.429602 kcal Electronic energy + Delta-G solvation = -29032.399776 eV Core-core repulsion = 25016.113146 eV Total energy + Delta-G solvation = -4016.286630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39210 -39.67568 -38.45140 -37.38523 -36.09146 -34.32859 -33.71084 -32.07213 -30.74727 -30.35468 -30.07899 -28.56896 -25.49903 -24.57084 -24.04014 -23.75788 -22.50268 -21.17667 -20.22806 -19.90540 -19.26544 -18.40857 -17.74199 -16.85988 -16.65434 -16.07459 -15.88475 -15.29768 -14.97066 -14.77110 -14.59749 -14.44522 -14.02503 -13.94300 -13.73587 -13.65848 -13.36983 -12.83516 -12.30211 -12.17273 -12.09059 -12.03201 -11.73897 -11.65944 -11.61565 -11.17831 -10.94541 -10.88795 -10.88027 -10.57119 -10.47147 -10.16644 -10.09784 -9.81503 -9.64659 -9.50355 -9.08007 -8.73231 -8.67212 -8.62696 -6.91629 -5.69072 -3.12333 -0.16876 0.23745 1.47402 2.21224 3.07979 3.12884 3.32974 3.36712 3.42100 3.44690 3.72343 4.11727 4.15104 4.30058 4.39198 4.44886 4.69906 4.75709 4.87376 4.97508 5.22763 5.27796 5.29047 5.38229 5.49673 5.49964 5.59266 5.59650 5.76988 5.88725 5.96860 6.01506 6.06629 6.20045 6.25509 6.29433 6.36322 6.49078 6.55077 6.69749 6.81311 7.04536 7.29930 7.48283 7.54710 7.59126 7.62145 7.82140 8.26661 8.32253 9.16723 9.77616 10.41150 11.34208 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002494 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.647546 B =11223.274790 C =12203.322679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.137 3.863 5 H 0.094 0.906 6 N -0.710 5.710 7 C 0.559 3.441 8 O -0.516 6.516 9 C -0.195 4.195 10 C -0.004 4.004 11 C -0.123 4.123 12 C -0.081 4.081 13 C -0.125 4.125 14 C -0.087 4.087 15 C -0.103 4.103 16 C 0.167 3.833 17 N -0.502 5.502 18 C 0.395 3.605 19 O -0.458 6.458 20 C -0.153 4.153 21 C 0.152 3.848 22 N -0.595 5.595 23 C -0.221 4.221 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.394 0.606 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.407 0.593 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.109 0.891 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 14.419 -20.289 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.052 0.948 4 C 0.033 3.967 5 H 0.112 0.888 6 N -0.362 5.362 7 C 0.344 3.656 8 O -0.393 6.393 9 C -0.202 4.202 10 C -0.030 4.030 11 C -0.125 4.125 12 C -0.100 4.100 13 C -0.143 4.143 14 C -0.107 4.107 15 C -0.122 4.122 16 C 0.045 3.955 17 N -0.222 5.222 18 C 0.201 3.799 19 O -0.266 6.266 20 C -0.193 4.193 21 C 0.027 3.973 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.206 1.206 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.229 0.771 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.267 0.733 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.127 0.873 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.193 13.105 -21.019 24.798 hybrid contribution -0.614 0.936 1.775 2.099 sum 0.579 14.041 -19.244 23.829 Atomic orbital electron populations 1.22248 0.97813 1.01543 0.99913 1.20975 0.92629 0.94700 0.86920 0.94758 1.22198 0.97784 0.90651 0.86117 0.88800 1.46001 1.69216 1.14030 1.06910 1.17736 0.78380 0.87338 0.82144 1.90822 1.48853 1.17740 1.81859 1.21253 1.08147 0.95079 0.95689 1.22020 0.90253 0.91282 0.99434 1.18781 1.04264 0.95596 0.93824 1.21082 0.97232 0.91530 1.00134 1.20957 1.00227 1.00428 0.92698 1.21002 0.97327 0.95241 0.97127 1.20833 0.99820 0.92711 0.98828 1.18674 0.95745 0.89213 0.91827 1.67564 1.15588 1.02920 1.36112 1.19185 0.90058 0.84459 0.86247 1.84723 1.33286 1.18807 1.89763 1.23407 0.96627 0.99477 0.99759 1.21962 0.97399 0.88382 0.89515 1.44498 1.59247 1.28233 1.00036 1.19055 1.27189 1.08206 0.80458 0.90401 1.24800 1.00333 0.97367 0.98083 1.69807 1.39054 1.17836 1.30101 0.86011 0.77354 0.77538 0.84640 1.20556 1.21743 1.21755 0.92827 0.92659 0.94363 0.77061 0.83229 0.84655 0.85157 0.85006 0.84419 0.73293 0.91789 0.92020 0.96663 0.87288 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.14 37.15 0.34 -2.43 16 2 C 0.16 3.00 3.48 -66.95 -0.23 2.77 16 3 H 0.03 0.63 7.69 -51.93 -0.40 0.24 16 4 C 0.14 2.41 2.76 -66.10 -0.18 2.23 16 5 H 0.09 1.77 7.41 -51.93 -0.38 1.38 16 6 N -0.71 -10.06 5.15 -53.06 -0.27 -10.34 16 7 C 0.56 8.35 7.77 -12.46 -0.10 8.26 16 8 O -0.52 -9.38 14.87 -16.68 -0.25 -9.63 16 9 C -0.19 -2.45 5.90 -104.71 -0.62 -3.07 16 10 C 0.00 -0.04 9.38 -38.46 -0.36 -0.40 16 11 C -0.12 -1.19 5.74 -106.80 -0.61 -1.81 16 12 C -0.08 -0.58 9.77 -39.47 -0.39 -0.96 16 13 C -0.13 -0.76 9.96 -39.93 -0.40 -1.16 16 14 C -0.09 -0.55 9.94 -39.93 -0.40 -0.95 16 15 C -0.10 -0.88 9.97 -39.47 -0.39 -1.28 16 16 C 0.17 1.86 6.61 -84.79 -0.56 1.30 16 17 N -0.50 -6.52 10.33 -10.76 -0.11 -6.63 16 18 C 0.40 5.28 7.74 -16.60 -0.13 5.15 16 19 O -0.46 -6.12 11.59 -39.88 -0.46 -6.58 16 20 C -0.15 -3.01 6.77 -24.58 -0.17 -3.18 16 21 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 22 N -0.59 -14.44 3.13 -162.57 -0.51 -14.95 16 23 C -0.22 -5.87 9.89 -15.06 -0.15 -6.02 16 24 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 27 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.39 4.48 6.38 -40.82 -0.26 4.22 16 35 H 0.15 1.04 6.47 -52.49 -0.34 0.70 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.41 3.67 9.06 45.56 0.41 4.08 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -33.78 372.20 -9.95 -43.73 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.04 Total: 6.28 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -4.45 Total: 1.73 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.33 Total: -57.68 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.71 Total: -16.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.78 -9.95 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088783271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.162 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds