Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.87079 * 2 1 4 4 C 1.54422 * 110.00973 * 238.90773 * 2 1 3 5 5 H 1.08998 * 110.72773 * 336.65720 * 4 2 1 6 6 N 1.46500 * 110.76057 * 99.96644 * 4 2 1 7 7 C 1.34786 * 119.99904 * 199.94072 * 6 4 2 8 8 O 1.21646 * 119.99822 * 0.02562 * 7 6 4 9 9 C 1.47095 * 119.99984 * 179.97438 * 7 6 4 10 10 C 1.42467 * 128.38352 * 4.78847 * 9 7 6 11 11 N 1.29881 * 106.41079 * 179.89394 * 10 9 7 12 12 O 1.20743 * 112.75696 * 0.40517 * 11 10 9 13 13 C 1.34236 * 111.94860 * 359.73492 * 12 11 10 14 14 C 1.47561 * 127.17217 * 179.97438 * 13 12 11 15 15 C 1.39707 * 120.15646 * 51.75088 * 14 13 12 16 16 C 1.37921 * 119.83473 * 179.71984 * 15 14 13 17 17 C 1.38379 * 120.16051 * 0.55092 * 16 15 14 18 18 C 1.38376 * 120.31923 * 359.71782 * 17 16 15 19 19 C 1.37934 * 120.15599 * 0.02562 * 18 17 16 20 20 C 1.55164 * 102.89606 * 218.31963 * 4 2 1 21 21 C 1.54913 * 101.61086 * 35.49874 * 20 4 2 22 22 N 1.47017 * 109.88159 * 121.00800 * 2 1 3 23 23 C 1.36937 * 125.65436 * 298.48382 * 22 2 1 24 24 H 1.07996 * 119.99695 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00499 * 180.02562 * 23 22 2 26 26 N 1.31623 * 119.99894 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00203 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47129 * 90.00035 * 27 25 23 29 29 H 1.48496 * 109.47275 * 210.00184 * 27 25 23 30 30 H 1.48504 * 109.46895 * 329.99896 * 27 25 23 31 31 H 1.08993 * 109.47528 * 300.44156 * 1 2 3 32 32 H 1.09002 * 109.46895 * 60.44213 * 1 2 3 33 33 H 1.09006 * 109.47091 * 180.43448 * 1 2 3 34 34 H 0.96998 * 120.00632 * 19.93658 * 6 4 2 35 35 H 1.08006 * 126.79736 * 0.04389 * 10 9 7 36 36 H 1.07995 * 120.07782 * 359.97438 * 15 14 13 37 37 H 1.08002 * 119.92161 * 180.29443 * 16 15 14 38 38 H 1.08004 * 119.84314 * 179.70356 * 17 16 15 39 39 H 1.08003 * 119.92218 * 179.97438 * 18 17 16 40 40 H 1.07999 * 120.07766 * 180.02562 * 19 18 17 41 41 H 1.08994 * 111.00078 * 277.40923 * 20 4 2 42 42 H 1.08996 * 111.00133 * 153.59199 * 20 4 2 43 43 H 1.08999 * 110.36785 * 81.81443 * 21 20 4 44 44 H 1.09001 * 110.36181 * 204.12999 * 21 20 4 45 45 H 0.96999 * 119.99800 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7493 -1.2426 5 1 1.3109 -1.4478 -1.6186 6 7 2.4589 0.1960 -2.2877 7 6 2.5625 -0.2173 -3.5664 8 8 2.3231 -1.3751 -3.8527 9 6 2.9640 0.7319 -4.6159 10 6 3.3716 2.0895 -4.4720 11 7 3.6303 2.5237 -5.6684 12 8 3.4492 1.6859 -6.5187 13 6 3.0321 0.5221 -5.9956 14 6 2.7116 -0.7196 -6.7256 15 6 3.6287 -1.2574 -7.6320 16 6 3.3247 -2.4215 -8.3064 17 6 2.1101 -3.0502 -8.0957 18 6 1.1947 -2.5201 -7.2036 19 6 1.4873 -1.3595 -6.5181 20 6 3.2919 -1.5108 -0.6892 21 6 2.8176 -1.8761 0.7396 22 7 2.0300 -0.7122 1.1850 23 6 1.8024 -0.3537 2.4868 24 1 1.2094 0.5208 2.7102 25 6 2.3339 -1.1141 3.5193 26 7 3.0563 -2.1802 3.2471 27 14 2.0240 -0.6245 5.2952 28 1 0.7848 -1.2827 5.7811 29 1 3.1727 -1.0512 6.1340 30 1 1.8683 0.8498 5.3821 31 1 -0.3634 0.5206 0.8859 32 1 -0.3633 0.5070 -0.8939 33 1 -0.3633 -1.0277 0.0078 34 1 2.6494 1.1193 -2.0595 35 1 3.4520 2.6465 -3.5501 36 1 4.5749 -0.7652 -7.8010 37 1 4.0346 -2.8411 -9.0039 38 1 1.8754 -3.9589 -8.6301 39 1 0.2485 -3.0159 -7.0443 40 1 0.7720 -0.9471 -5.8219 41 1 4.1682 -0.8634 -0.6563 42 1 3.4928 -2.4074 -1.2754 43 1 2.1937 -2.7696 0.7153 44 1 3.6742 -2.0284 1.3962 45 1 3.4280 -2.7113 3.9686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088950347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 84.765880 kcal Electronic energy + Delta-G solvation = -29178.512287 eV Core-core repulsion = 25165.275667 eV Total energy + Delta-G solvation = -4013.236620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.18868 -39.74737 -39.18979 -37.56508 -34.38376 -33.97134 -33.27202 -32.01973 -31.19497 -30.43197 -29.93015 -28.65810 -25.75178 -24.17280 -24.00626 -23.77884 -22.67379 -21.71676 -20.63241 -20.19276 -19.69441 -18.49164 -17.92305 -17.32722 -16.80048 -16.38959 -15.95258 -15.27864 -14.99309 -14.84656 -14.70857 -14.48230 -14.04713 -13.83602 -13.69047 -13.50860 -13.36669 -13.05002 -12.83391 -12.17600 -12.05738 -11.94393 -11.61608 -11.59185 -11.40101 -11.17867 -10.90407 -10.86684 -10.78343 -10.57682 -10.47403 -10.12288 -10.07256 -9.90826 -9.79471 -9.60248 -9.16411 -8.85553 -8.72385 -8.65087 -6.91495 -5.68860 -3.12011 0.36548 1.18573 1.28748 1.60580 2.51824 3.21129 3.21885 3.37350 3.42504 3.44331 3.52014 3.97283 4.24587 4.41467 4.45525 4.66270 4.69830 4.84618 4.91321 5.03837 5.19757 5.25077 5.31771 5.38211 5.48669 5.51612 5.58931 5.61922 5.76918 5.77117 6.07260 6.13605 6.19006 6.19771 6.25354 6.26057 6.29342 6.48339 6.55310 6.65716 6.68245 6.81646 7.04709 7.47732 7.58969 7.59930 7.81874 7.85091 8.25544 8.32135 9.17000 9.77874 10.41308 11.34419 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.002553 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.489170 B =10965.454117 C =11723.086733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.138 3.862 5 H 0.094 0.906 6 N -0.705 5.705 7 C 0.591 3.409 8 O -0.525 6.525 9 C -0.238 4.238 10 C 0.027 3.973 11 N -0.362 5.362 12 O 0.111 5.889 13 C 0.081 3.919 14 C -0.035 4.035 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.046 4.046 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.221 4.221 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.282 1.282 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.397 0.603 35 H 0.201 0.799 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.109 0.891 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 3.299 -22.603 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.034 3.966 5 H 0.112 0.888 6 N -0.355 5.355 7 C 0.376 3.624 8 O -0.402 6.402 9 C -0.245 4.245 10 C -0.152 4.152 11 N -0.066 5.066 12 O 0.048 5.952 13 C 0.015 3.985 14 C -0.036 4.036 15 C -0.103 4.103 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.139 4.139 19 C -0.064 4.064 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.231 0.769 35 H 0.218 0.782 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.127 0.873 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.386 3.580 -23.030 23.310 hybrid contribution -0.275 0.203 1.749 1.782 sum -0.661 3.783 -21.281 21.625 Atomic orbital electron populations 1.22245 0.97818 1.01451 0.99995 1.20994 0.92618 0.94767 0.86865 0.94703 1.22202 0.97745 0.90627 0.86070 0.88797 1.45875 1.68927 1.14064 1.06646 1.16693 0.77801 0.86376 0.81531 1.90843 1.49863 1.17562 1.81950 1.21620 1.13038 0.96056 0.93809 1.25099 0.99674 0.93020 0.97436 1.73548 1.19678 1.13618 0.99738 1.84901 1.61812 1.15771 1.32742 1.23104 0.96112 0.88151 0.91091 1.17476 0.96292 0.91006 0.98856 1.21217 0.98556 0.96089 0.94454 1.21027 0.97370 0.95624 1.00491 1.21353 0.93663 0.99335 0.97283 1.21073 1.00232 0.95777 0.96858 1.21091 0.94614 0.94479 0.96237 1.23406 0.96649 0.99425 0.99753 1.21957 0.97345 0.88390 0.89522 1.44485 1.59087 1.28410 1.00026 1.19011 1.27126 1.08330 0.80476 0.90455 1.24790 1.00288 0.97389 0.98065 1.69794 1.38903 1.17973 1.30184 0.86083 0.77269 0.77729 0.84459 1.21622 1.21660 1.20721 0.92629 0.94342 0.92887 0.76851 0.78201 0.85468 0.85399 0.85630 0.85257 0.85517 0.92002 0.91859 0.96710 0.87306 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.15 37.16 0.34 -2.43 16 2 C 0.16 3.00 3.47 -66.90 -0.23 2.77 16 3 H 0.04 0.65 7.69 -51.93 -0.40 0.25 16 4 C 0.14 2.39 2.77 -66.04 -0.18 2.21 16 5 H 0.09 1.73 7.42 -51.93 -0.39 1.35 16 6 N -0.71 -9.93 5.20 -53.15 -0.28 -10.20 16 7 C 0.59 8.63 7.79 -12.66 -0.10 8.53 16 8 O -0.52 -9.09 14.18 5.24 0.07 -9.01 16 9 C -0.24 -2.97 6.33 -104.12 -0.66 -3.63 16 10 C 0.03 0.29 11.68 -16.75 -0.20 0.09 16 11 N -0.36 -4.32 11.98 30.84 0.37 -3.96 16 12 O 0.11 1.30 11.17 16.70 0.19 1.48 16 13 C 0.08 0.98 6.95 -35.23 -0.24 0.73 16 14 C -0.03 -0.40 5.35 -105.00 -0.56 -0.96 16 15 C -0.08 -0.82 9.79 -39.15 -0.38 -1.20 16 16 C -0.13 -1.05 10.03 -39.65 -0.40 -1.45 16 17 C -0.10 -0.81 10.04 -39.48 -0.40 -1.21 16 18 C -0.12 -1.16 10.03 -39.64 -0.40 -1.55 16 19 C -0.05 -0.52 8.03 -39.15 -0.31 -0.83 16 20 C -0.15 -2.96 6.76 -24.58 -0.17 -3.13 16 21 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 22 N -0.59 -14.43 3.13 -162.51 -0.51 -14.94 16 23 C -0.22 -5.89 9.87 -15.06 -0.15 -6.04 16 24 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 25 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 26 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 27 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.59 7.56 -40.82 -0.31 4.28 16 35 H 0.20 1.49 7.76 -52.48 -0.41 1.08 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.13 1.47 7.78 -52.49 -0.41 1.06 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -31.39 377.24 -9.07 -40.45 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.98 Total: 4.46 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -4.15 Total: -4.84 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.14 Total: -54.81 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.26 Total: -7.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.39 -9.07 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088950347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.219 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds