Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87255 * 2 1 4 4 C 1.54321 * 109.88524 * 238.82374 * 2 1 3 5 5 H 1.08998 * 110.71538 * 336.75291 * 4 2 1 6 6 N 1.46497 * 110.72147 * 100.02876 * 4 2 1 7 7 C 1.34766 * 119.99919 * 204.99869 * 6 4 2 8 8 O 1.21545 * 120.00492 * 0.02562 * 7 6 4 9 9 C 1.47877 * 120.00163 * 179.97438 * 7 6 4 10 10 C 1.39683 * 120.07157 * 0.02562 * 9 7 6 11 11 C 1.38045 * 120.14859 * 179.97438 * 10 9 7 12 12 C 1.38105 * 120.30136 * 359.97438 * 11 10 9 13 13 C 1.39643 * 120.14224 * 0.04025 * 12 11 10 14 14 C 1.47847 * 120.07269 * 179.97438 * 13 12 11 15 15 C 1.35759 * 126.58203 * 359.71620 * 14 13 12 16 16 N 1.34147 * 107.51874 * 179.83788 * 15 14 13 17 17 C 1.30356 * 108.89679 * 0.43286 * 16 15 14 18 18 O 1.33996 * 109.03602 * 359.73141 * 17 16 15 19 19 C 1.39302 * 120.07817 * 179.72533 * 9 7 6 20 20 C 1.55164 * 102.94092 * 218.39365 * 4 2 1 21 21 C 1.54911 * 101.58090 * 35.49953 * 20 4 2 22 22 N 1.47024 * 109.87877 * 121.01471 * 2 1 3 23 23 C 1.36941 * 125.64764 * 298.32451 * 22 2 1 24 24 H 1.07993 * 120.00060 * 341.49272 * 23 22 2 25 25 C 1.38815 * 119.99825 * 161.49630 * 23 22 2 26 26 N 1.31621 * 119.99948 * 157.62075 * 25 23 22 27 27 Si 1.86801 * 120.00057 * 337.61975 * 25 23 22 28 28 H 1.48503 * 109.46997 * 84.54288 * 27 25 23 29 29 H 1.48501 * 109.47235 * 204.54168 * 27 25 23 30 30 H 1.48497 * 109.47098 * 324.54133 * 27 25 23 31 31 H 1.08997 * 109.47561 * 300.44368 * 1 2 3 32 32 H 1.09001 * 109.46759 * 60.43652 * 1 2 3 33 33 H 1.08995 * 109.47333 * 180.43627 * 1 2 3 34 34 H 0.97008 * 119.99887 * 24.99928 * 6 4 2 35 35 H 1.08007 * 119.92789 * 359.95590 * 10 9 7 36 36 H 1.08003 * 119.85493 * 179.97438 * 11 10 9 37 37 H 1.07996 * 119.92868 * 180.02562 * 12 11 10 38 38 H 1.08005 * 126.24702 * 359.97438 * 15 14 13 39 39 H 1.08007 * 125.48258 * 179.72459 * 17 16 15 40 40 H 1.08002 * 120.15030 * 0.02562 * 19 9 7 41 41 H 1.08999 * 111.00202 * 277.42824 * 20 4 2 42 42 H 1.08998 * 110.99980 * 153.57448 * 20 4 2 43 43 H 1.09005 * 110.36235 * 204.15226 * 21 20 4 44 44 H 1.09006 * 110.36416 * 81.83311 * 21 20 4 45 45 H 0.97001 * 120.00065 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2416 5 1 1.3051 -1.4482 -1.6161 6 7 2.4556 0.1928 -2.2877 7 6 2.4584 -0.1934 -3.5788 8 8 2.1280 -1.3248 -3.8755 9 6 2.8623 0.7597 -4.6349 10 6 3.2417 2.0606 -4.2958 11 6 3.6196 2.9514 -5.2803 12 6 3.6258 2.5638 -6.6058 13 6 3.2485 1.2664 -6.9587 14 6 3.2552 0.8532 -8.3782 15 6 3.5970 1.6226 -9.4433 16 7 3.4703 0.8670 -10.5444 17 6 3.0592 -0.3202 -10.1969 18 8 2.9167 -0.3608 -8.8651 19 6 2.8713 0.3605 -5.9694 20 6 3.2876 -1.5153 -0.6901 21 6 2.8144 -1.8784 0.7396 22 7 2.0299 -0.7124 1.1850 23 6 1.8048 -0.3521 2.4868 24 1 1.4861 0.6527 2.7216 25 6 1.9863 -1.2784 3.5046 26 7 2.2072 -0.8686 4.7357 27 14 1.9169 -3.1066 3.1271 28 1 3.2475 -3.5649 2.6529 29 1 1.5457 -3.8522 4.3565 30 1 0.9025 -3.3559 2.0717 31 1 -0.3634 0.5207 0.8859 32 1 -0.3633 0.5071 -0.8939 33 1 -0.3634 -1.0276 0.0078 34 1 2.7189 1.0960 -2.0510 35 1 3.2392 2.3702 -3.2611 36 1 3.9117 3.9562 -5.0128 37 1 3.9229 3.2655 -7.3710 38 1 3.9152 2.6541 -9.4099 39 1 2.8646 -1.1393 -10.8735 40 1 2.5831 -0.6455 -6.2366 41 1 4.1654 -0.8698 -0.6589 42 1 3.4852 -2.4129 -1.2760 43 1 3.6715 -2.0319 1.3953 44 1 2.1885 -2.7705 0.7168 45 1 2.3337 -1.5158 5.4470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088952271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 48.079104 kcal Electronic energy + Delta-G solvation = -28466.204748 eV Core-core repulsion = 24451.377269 eV Total energy + Delta-G solvation = -4014.827478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.70502 -40.47322 -38.97074 -37.73418 -35.20690 -34.38851 -33.13607 -32.11951 -31.54316 -30.75097 -29.55097 -28.84539 -25.49395 -24.35691 -24.02836 -23.74933 -22.66544 -21.82358 -21.16400 -20.42535 -19.77759 -18.57761 -17.47748 -16.99886 -16.99502 -16.62394 -16.21294 -15.65746 -15.40318 -15.04842 -14.95461 -14.53031 -14.37042 -14.24639 -13.83328 -13.60214 -13.46409 -13.20190 -12.98784 -12.80258 -12.23184 -12.16867 -11.91293 -11.83611 -11.78105 -11.60275 -11.24095 -11.05752 -10.94313 -10.81544 -10.52751 -10.40309 -10.20199 -10.03295 -9.94161 -9.48094 -9.45998 -8.91623 -8.69934 -8.58406 -7.12228 -5.97946 -3.29194 0.09559 0.59569 1.43826 2.21816 2.25315 2.72775 3.03684 3.33933 3.48133 3.50148 3.52897 3.77142 4.11297 4.34086 4.41334 4.52460 4.52901 4.64239 4.67873 4.87891 4.89269 5.06131 5.13856 5.18586 5.25527 5.29205 5.39744 5.49221 5.56205 5.79399 5.81921 5.84895 5.86940 5.89222 5.90735 6.00306 6.13649 6.24131 6.28771 6.35948 6.40642 6.58827 6.69613 6.75014 6.92865 7.22069 7.47696 7.65883 8.14452 8.27549 8.78618 9.64963 10.11992 11.17778 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.002128 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.440288 B =13154.558519 C =13711.318326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.046 0.954 4 C 0.133 3.867 5 H 0.100 0.900 6 N -0.708 5.708 7 C 0.556 3.444 8 O -0.535 6.535 9 C -0.124 4.124 10 C -0.075 4.075 11 C -0.119 4.119 12 C -0.073 4.073 13 C -0.028 4.028 14 C 0.003 3.997 15 C -0.024 4.024 16 N -0.487 5.487 17 C 0.175 3.825 18 O -0.196 6.196 19 C -0.040 4.040 20 C -0.141 4.141 21 C 0.111 3.889 22 N -0.601 5.601 23 C -0.239 4.239 24 H 0.093 0.907 25 C 0.023 3.977 26 N -0.907 5.907 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.276 1.276 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.400 0.600 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.187 0.813 39 H 0.252 0.748 40 H 0.142 0.858 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 7.463 -26.988 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.064 0.936 4 C 0.029 3.971 5 H 0.118 0.882 6 N -0.359 5.359 7 C 0.343 3.657 8 O -0.413 6.413 9 C -0.127 4.127 10 C -0.093 4.093 11 C -0.137 4.137 12 C -0.092 4.092 13 C -0.029 4.029 14 C -0.051 4.051 15 C -0.164 4.164 16 N -0.215 5.215 17 C -0.050 4.050 18 O -0.082 6.082 19 C -0.059 4.059 20 C -0.180 4.180 21 C -0.014 4.014 22 N -0.327 5.327 23 C -0.366 4.366 24 H 0.110 0.890 25 C -0.176 4.176 26 N -0.551 5.551 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.230 1.230 30 H -0.202 1.202 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.235 0.765 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.204 0.796 39 H 0.268 0.732 40 H 0.160 0.840 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.252 6.758 -27.492 28.496 hybrid contribution -0.117 -0.955 0.643 1.157 sum 3.135 5.803 -26.849 27.647 Atomic orbital electron populations 1.22212 0.97135 1.01613 1.00594 1.21083 0.92942 0.95213 0.85944 0.93622 1.22190 0.97224 0.91079 0.86632 0.88219 1.45935 1.67799 1.16329 1.05814 1.18156 0.77890 0.87127 0.82535 1.90784 1.48032 1.20110 1.82382 1.19956 1.04185 0.94694 0.93878 1.21550 0.95253 0.92179 1.00344 1.21027 1.00446 1.00316 0.91910 1.21217 0.96965 0.93886 0.97085 1.17509 1.04043 0.94528 0.86811 1.21393 1.05391 0.83663 0.94618 1.23307 1.05118 1.01460 0.86496 1.70371 1.17046 1.03020 1.31069 1.28197 0.99118 0.97975 0.79699 1.84520 1.66005 1.33343 1.24291 1.21377 0.94009 0.99795 0.90756 1.23146 0.97557 1.00174 0.97125 1.21966 0.95289 0.91140 0.93027 1.44819 1.57518 1.28883 1.01461 1.18565 1.42670 0.96760 0.78580 0.88961 1.24990 1.00065 0.97683 0.94840 1.69832 1.50648 1.34000 1.00585 0.87013 0.78267 0.87417 0.76175 1.21191 1.23046 1.20157 0.91899 0.94049 0.93008 0.76452 0.84760 0.84284 0.84793 0.79594 0.73181 0.83985 0.90864 0.91187 0.91862 0.95438 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.14 37.16 0.34 -2.41 16 2 C 0.16 2.85 3.48 -66.95 -0.23 2.62 16 3 H 0.05 0.80 7.72 -51.93 -0.40 0.39 16 4 C 0.13 2.17 2.84 -66.09 -0.19 1.98 16 5 H 0.10 1.76 7.26 -51.93 -0.38 1.38 16 6 N -0.71 -9.16 5.13 -52.96 -0.27 -9.44 16 7 C 0.56 7.66 7.77 -12.32 -0.10 7.57 16 8 O -0.54 -9.33 15.99 5.33 0.09 -9.25 16 9 C -0.12 -1.34 5.87 -105.02 -0.62 -1.95 16 10 C -0.07 -0.58 9.54 -39.11 -0.37 -0.96 16 11 C -0.12 -0.73 10.02 -39.70 -0.40 -1.13 16 12 C -0.07 -0.48 9.57 -39.11 -0.37 -0.85 16 13 C -0.03 -0.25 5.87 -105.03 -0.62 -0.87 16 14 C 0.00 0.02 7.07 -36.54 -0.26 -0.23 16 15 C -0.02 -0.20 11.29 -17.43 -0.20 -0.40 16 16 N -0.49 -4.49 11.27 -14.68 -0.17 -4.65 16 17 C 0.18 1.26 13.22 52.14 0.69 1.95 16 18 O -0.20 -1.85 10.58 4.25 0.04 -1.80 16 19 C -0.04 -0.44 9.27 -38.77 -0.36 -0.80 16 20 C -0.14 -2.42 6.77 -24.58 -0.17 -2.58 16 21 C 0.11 2.38 4.69 -2.53 -0.01 2.37 16 22 N -0.60 -13.82 2.94 -162.57 -0.48 -14.29 16 23 C -0.24 -6.49 10.17 -15.06 -0.15 -6.64 16 24 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 25 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 26 N -0.91 -27.44 13.97 55.49 0.78 -26.66 16 27 Si 0.88 22.40 24.27 -169.99 -4.13 18.27 16 28 H -0.28 -6.99 6.49 56.52 0.37 -6.62 16 29 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 30 H -0.28 -6.96 6.66 56.52 0.38 -6.58 16 31 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 4.07 6.40 -40.82 -0.26 3.81 16 35 H 0.13 0.79 6.39 -52.48 -0.34 0.46 16 36 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 37 H 0.13 0.50 7.02 -52.49 -0.37 0.14 16 38 H 0.19 0.98 7.29 -52.48 -0.38 0.60 16 39 H 0.25 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.14 1.70 7.53 -52.49 -0.40 1.30 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.44 6.64 -51.93 -0.34 1.09 16 44 H 0.03 0.63 5.58 -51.93 -0.29 0.34 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -35.11 371.30 -7.37 -42.49 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.73 Total: 1.53 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.11 Total: -1.79 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.14 Total: -55.04 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.13 Total: -11.05 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.13 Total: 18.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.11 -7.37 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088952271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.565 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds