Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87255 * 2 1 4 4 C 1.54321 * 109.88524 * 238.82374 * 2 1 3 5 5 H 1.08998 * 110.71538 * 336.75291 * 4 2 1 6 6 N 1.46497 * 110.72147 * 100.02876 * 4 2 1 7 7 C 1.34766 * 119.99919 * 204.99869 * 6 4 2 8 8 O 1.21545 * 120.00492 * 0.02562 * 7 6 4 9 9 C 1.47877 * 120.00163 * 179.97438 * 7 6 4 10 10 C 1.39683 * 120.07157 * 0.02562 * 9 7 6 11 11 C 1.38045 * 120.14859 * 179.97438 * 10 9 7 12 12 C 1.38105 * 120.30136 * 359.97438 * 11 10 9 13 13 C 1.39643 * 120.14224 * 0.04025 * 12 11 10 14 14 C 1.47847 * 120.07269 * 179.97438 * 13 12 11 15 15 C 1.35759 * 126.58203 * 359.71620 * 14 13 12 16 16 N 1.34147 * 107.51874 * 179.83788 * 15 14 13 17 17 C 1.30356 * 108.89679 * 0.43286 * 16 15 14 18 18 O 1.33996 * 109.03602 * 359.73141 * 17 16 15 19 19 C 1.39302 * 120.07817 * 179.72533 * 9 7 6 20 20 C 1.55164 * 102.94092 * 218.39365 * 4 2 1 21 21 C 1.54911 * 101.58090 * 35.49953 * 20 4 2 22 22 N 1.47024 * 109.87877 * 121.01471 * 2 1 3 23 23 C 1.36941 * 125.64764 * 298.32451 * 22 2 1 24 24 H 1.07993 * 120.00060 * 341.49272 * 23 22 2 25 25 C 1.38815 * 119.99825 * 161.49630 * 23 22 2 26 26 N 1.31621 * 119.99948 * 157.62075 * 25 23 22 27 27 Si 1.86801 * 120.00057 * 337.61975 * 25 23 22 28 28 H 1.48503 * 109.46997 * 84.54288 * 27 25 23 29 29 H 1.48501 * 109.47235 * 204.54168 * 27 25 23 30 30 H 1.48497 * 109.47098 * 324.54133 * 27 25 23 31 31 H 1.08997 * 109.47561 * 300.44368 * 1 2 3 32 32 H 1.09001 * 109.46759 * 60.43652 * 1 2 3 33 33 H 1.08995 * 109.47333 * 180.43627 * 1 2 3 34 34 H 0.97008 * 119.99887 * 24.99928 * 6 4 2 35 35 H 1.08007 * 119.92789 * 359.95590 * 10 9 7 36 36 H 1.08003 * 119.85493 * 179.97438 * 11 10 9 37 37 H 1.07996 * 119.92868 * 180.02562 * 12 11 10 38 38 H 1.08005 * 126.24702 * 359.97438 * 15 14 13 39 39 H 1.08007 * 125.48258 * 179.72459 * 17 16 15 40 40 H 1.08002 * 120.15030 * 0.02562 * 19 9 7 41 41 H 1.08999 * 111.00202 * 277.42824 * 20 4 2 42 42 H 1.08998 * 110.99980 * 153.57448 * 20 4 2 43 43 H 1.09005 * 110.36235 * 204.15226 * 21 20 4 44 44 H 1.09006 * 110.36416 * 81.83311 * 21 20 4 45 45 H 0.97001 * 120.00065 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2416 5 1 1.3051 -1.4482 -1.6161 6 7 2.4556 0.1928 -2.2877 7 6 2.4584 -0.1934 -3.5788 8 8 2.1280 -1.3248 -3.8755 9 6 2.8623 0.7597 -4.6349 10 6 3.2417 2.0606 -4.2958 11 6 3.6196 2.9514 -5.2803 12 6 3.6258 2.5638 -6.6058 13 6 3.2485 1.2664 -6.9587 14 6 3.2552 0.8532 -8.3782 15 6 3.5970 1.6226 -9.4433 16 7 3.4703 0.8670 -10.5444 17 6 3.0592 -0.3202 -10.1969 18 8 2.9167 -0.3608 -8.8651 19 6 2.8713 0.3605 -5.9694 20 6 3.2876 -1.5153 -0.6901 21 6 2.8144 -1.8784 0.7396 22 7 2.0299 -0.7124 1.1850 23 6 1.8048 -0.3521 2.4868 24 1 1.4861 0.6527 2.7216 25 6 1.9863 -1.2784 3.5046 26 7 2.2072 -0.8686 4.7357 27 14 1.9169 -3.1066 3.1271 28 1 3.2475 -3.5649 2.6529 29 1 1.5457 -3.8522 4.3565 30 1 0.9025 -3.3559 2.0717 31 1 -0.3634 0.5207 0.8859 32 1 -0.3633 0.5071 -0.8939 33 1 -0.3634 -1.0276 0.0078 34 1 2.7189 1.0960 -2.0510 35 1 3.2392 2.3702 -3.2611 36 1 3.9117 3.9562 -5.0128 37 1 3.9229 3.2655 -7.3710 38 1 3.9152 2.6541 -9.4099 39 1 2.8646 -1.1393 -10.8735 40 1 2.5831 -0.6455 -6.2366 41 1 4.1654 -0.8698 -0.6589 42 1 3.4852 -2.4129 -1.2760 43 1 3.6715 -2.0319 1.3953 44 1 2.1885 -2.7705 0.7168 45 1 2.3337 -1.5158 5.4470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088952271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 21.951065 kcal Electronic energy + Delta-G solvation = -28467.337744 eV Core-core repulsion = 24451.377269 eV Total energy + Delta-G solvation = -4015.960475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.29876 -41.46814 -40.01780 -38.99917 -35.82416 -35.76440 -34.30708 -33.53271 -32.29585 -32.26435 -31.05864 -29.61155 -26.80735 -25.87101 -25.11073 -24.54830 -23.47905 -22.58096 -22.43076 -21.59310 -21.06647 -19.39111 -18.85051 -18.19362 -17.75276 -17.62431 -17.13410 -16.92579 -16.46212 -16.31450 -16.09918 -15.66213 -15.23746 -15.11428 -14.96299 -14.77689 -14.65443 -14.43347 -14.15116 -13.99258 -13.84234 -13.49769 -13.24334 -12.93610 -12.79330 -12.60114 -12.47562 -12.46832 -12.41336 -12.14968 -12.05228 -11.68880 -11.63321 -11.49765 -11.09522 -11.01477 -10.81302 -10.23613 -9.98648 -9.17489 -9.08655 -8.16841 -5.42967 -0.49271 -0.10667 0.86024 1.29561 1.38999 1.45869 1.63974 1.70172 1.87944 1.95972 2.41111 2.81016 3.03762 3.25609 3.34082 3.49960 3.62126 3.65243 3.73026 3.85610 3.98029 4.08671 4.09515 4.14314 4.27211 4.29811 4.40185 4.49462 4.54042 4.71678 4.75145 4.78932 4.84855 4.86946 4.89450 4.97014 5.04887 5.13371 5.23489 5.29730 5.31110 5.33666 5.34182 5.51259 5.69683 5.74873 6.11982 6.46423 6.64470 6.74983 7.11654 7.54104 8.09563 9.02477 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.002128 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.440288 B =13154.558519 C =13711.318326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.152 3.848 3 H 0.065 0.935 4 C 0.148 3.852 5 H 0.087 0.913 6 N -0.695 5.695 7 C 0.558 3.442 8 O -0.580 6.580 9 C -0.142 4.142 10 C -0.071 4.071 11 C -0.109 4.109 12 C -0.062 4.062 13 C -0.036 4.036 14 C -0.023 4.023 15 C -0.020 4.020 16 N -0.519 5.519 17 C 0.184 3.816 18 O -0.217 6.217 19 C -0.061 4.061 20 C -0.128 4.128 21 C 0.105 3.895 22 N -0.616 5.616 23 C -0.218 4.218 24 H 0.070 0.930 25 C -0.034 4.034 26 N -0.953 5.953 27 Si 0.934 3.066 28 H -0.273 1.273 29 H -0.310 1.310 30 H -0.275 1.275 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.416 0.584 35 H 0.156 0.844 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.214 0.786 39 H 0.291 0.709 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 9.464 -29.830 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.046 3.954 3 H 0.082 0.918 4 C 0.042 3.958 5 H 0.105 0.895 6 N -0.347 5.347 7 C 0.347 3.653 8 O -0.460 6.460 9 C -0.145 4.145 10 C -0.089 4.089 11 C -0.126 4.126 12 C -0.080 4.080 13 C -0.037 4.037 14 C -0.076 4.076 15 C -0.159 4.159 16 N -0.247 5.247 17 C -0.040 4.040 18 O -0.104 6.104 19 C -0.080 4.080 20 C -0.167 4.167 21 C -0.020 4.020 22 N -0.343 5.343 23 C -0.346 4.346 24 H 0.087 0.913 25 C -0.229 4.229 26 N -0.600 5.600 27 Si 0.764 3.236 28 H -0.199 1.199 29 H -0.239 1.239 30 H -0.201 1.201 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.255 0.745 35 H 0.174 0.826 36 H 0.194 0.806 37 H 0.185 0.815 38 H 0.231 0.769 39 H 0.306 0.694 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.195 8.796 -30.384 31.909 hybrid contribution -0.407 -1.463 1.349 2.031 sum 3.789 7.333 -29.035 30.185 Atomic orbital electron populations 1.22131 0.96468 1.00933 1.01405 1.21272 0.93445 0.95724 0.84975 0.91768 1.21784 0.96409 0.91078 0.86480 0.89474 1.45684 1.67567 1.16518 1.04937 1.18620 0.76724 0.87016 0.82963 1.90761 1.50055 1.22220 1.83012 1.19709 1.06672 0.95520 0.92627 1.21820 0.94197 0.90877 1.02030 1.21475 0.98605 1.01438 0.91118 1.21667 0.94874 0.93058 0.98354 1.17666 1.04306 0.95342 0.86338 1.21618 1.06937 0.83931 0.95100 1.23761 1.03912 1.02406 0.85807 1.70408 1.18528 1.04019 1.31698 1.29184 0.96991 0.98516 0.79346 1.84527 1.66464 1.33984 1.25384 1.21246 0.95778 0.99378 0.91643 1.23055 0.98300 1.01075 0.94301 1.21999 0.94386 0.90384 0.95275 1.44898 1.58364 1.29629 1.01364 1.18512 1.39965 0.95652 0.80520 0.91254 1.25521 1.01420 1.01041 0.94884 1.69937 1.53588 1.34904 1.01538 0.86134 0.78706 0.83320 0.75408 1.19874 1.23899 1.20071 0.93518 0.90781 0.94414 0.74526 0.82638 0.80553 0.81487 0.76912 0.69368 0.86609 0.89359 0.90197 0.93439 0.96343 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.14 71.98 0.66 -4.45 16 2 C 0.15 5.33 3.48 45.34 0.16 5.49 16 3 H 0.06 2.06 7.72 -2.39 -0.02 2.04 16 4 C 0.15 4.58 2.84 46.18 0.13 4.71 16 5 H 0.09 2.99 7.26 -2.39 -0.02 2.97 16 6 N -0.70 -16.47 5.13 -439.77 -2.25 -18.72 16 7 C 0.56 14.84 7.77 86.80 0.67 15.51 16 8 O -0.58 -20.43 15.99 -3.86 -0.06 -20.49 16 9 C -0.14 -2.88 5.87 -20.12 -0.12 -3.00 16 10 C -0.07 -0.86 9.54 22.57 0.22 -0.65 16 11 C -0.11 -0.84 10.02 22.19 0.22 -0.61 16 12 C -0.06 -0.57 9.57 22.58 0.22 -0.36 16 13 C -0.04 -0.59 5.87 -20.13 -0.12 -0.71 16 14 C -0.02 -0.41 7.07 24.24 0.17 -0.24 16 15 C -0.02 -0.29 11.29 83.76 0.95 0.65 16 16 N -0.52 -8.73 11.27 -315.09 -3.55 -12.28 16 17 C 0.18 2.41 13.22 130.46 1.72 4.13 16 18 O -0.22 -4.05 10.58 -7.71 -0.08 -4.13 16 19 C -0.06 -1.32 9.27 22.79 0.21 -1.11 16 20 C -0.13 -4.19 6.77 31.99 0.22 -3.97 16 21 C 0.10 4.40 4.69 86.86 0.41 4.81 16 22 N -0.62 -28.03 2.94 -668.26 -1.96 -29.99 16 23 C -0.22 -11.97 10.17 84.03 0.85 -11.12 16 24 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 25 C -0.03 -1.98 5.43 84.86 0.46 -1.52 16 26 N -0.95 -59.15 13.97 21.65 0.30 -58.85 16 27 Si 0.93 47.13 24.27 68.60 1.67 48.80 16 28 H -0.27 -13.03 6.49 99.48 0.65 -12.38 16 29 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 30 H -0.27 -13.64 6.66 99.48 0.66 -12.97 16 31 H 0.05 1.72 8.03 -2.39 -0.02 1.70 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.42 7.09 6.40 -92.70 -0.59 6.50 16 35 H 0.16 1.15 6.39 -2.91 -0.02 1.13 16 36 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.17 0.41 7.02 -2.91 -0.02 0.39 16 38 H 0.21 1.54 7.29 -2.91 -0.02 1.52 16 39 H 0.29 0.66 8.06 -2.91 -0.02 0.64 16 40 H 0.12 3.01 7.53 -2.91 -0.02 2.99 16 41 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.05 2.13 6.64 -2.38 -0.02 2.12 16 44 H 0.02 0.83 5.58 -2.38 -0.01 0.82 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -79.94 371.30 1.42 -78.51 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.34 Total: 9.57 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 7.03 Total: 7.58 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -7.47 Total: -119.84 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.14 Total: -24.62 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.67 Total: 48.80 kcal Total: -79.94 1.42 -78.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088952271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.464 kcal (2) G-P(sol) polarization free energy of solvation -79.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds