Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42901 * 109.46958 * 120.79525 * 3 2 1 5 5 C 1.35433 * 116.99878 * 180.02562 * 4 3 2 6 6 N 1.32226 * 119.79928 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.80032 * 180.02562 * 6 5 4 8 8 C 1.38355 * 121.18550 * 359.97438 * 7 6 5 9 9 C 1.38343 * 119.45784 * 359.75731 * 8 7 6 10 10 C 1.39996 * 118.34412 * 0.50484 * 9 8 7 11 11 C 1.47526 * 120.59273 * 179.75778 * 10 9 8 12 12 O 1.21588 * 120.00007 * 179.72745 * 11 10 9 13 13 N 1.34776 * 120.00342 * 359.43891 * 11 10 9 14 14 C 1.46496 * 120.00440 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.55986 * 36.98312 * 14 13 11 16 16 C 1.54851 * 110.62928 * 160.05728 * 14 13 11 17 17 C 1.55845 * 103.44278 * 118.49119 * 16 14 13 18 18 H 1.09001 * 116.12602 * 159.15433 * 17 16 14 19 19 C 1.55843 * 105.06631 * 288.17558 * 17 16 14 20 20 C 1.54851 * 103.44588 * 71.82667 * 19 17 16 21 21 C 1.55844 * 110.62673 * 274.08726 * 14 13 11 22 22 H 1.08998 * 115.56777 * 82.69430 * 21 14 13 23 23 N 1.50235 * 101.05429 * 32.93867 * 17 16 14 24 24 C 1.36935 * 130.84206 * 126.05086 * 23 17 16 25 25 H 1.07997 * 120.00648 * 179.97438 * 24 23 17 26 26 C 1.38817 * 119.99439 * 359.97245 * 24 23 17 27 27 N 1.31613 * 120.00418 * 0.02562 * 26 24 23 28 28 Si 1.86807 * 119.99581 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47157 * 90.00561 * 28 26 24 30 30 H 1.48497 * 109.46915 * 210.00323 * 28 26 24 31 31 H 1.48494 * 109.47100 * 330.00196 * 28 26 24 32 32 H 4.38444 * 5.44457 * 180.02562 * 4 1 2 33 33 H 1.08998 * 109.47191 * 0.79821 * 3 2 1 34 34 H 1.08996 * 109.47182 * 240.79371 * 3 2 1 35 35 H 1.07995 * 119.41132 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.27184 * 180.02562 * 8 7 6 37 37 H 1.07995 * 120.83159 * 180.25808 * 9 8 7 38 38 H 0.97002 * 119.99802 * 0.02562 * 13 11 10 39 39 H 1.08997 * 110.62793 * 236.97851 * 16 14 13 40 40 H 1.09001 * 110.62639 * 0.02562 * 16 14 13 41 41 H 1.09002 * 110.63168 * 190.31885 * 19 17 16 42 42 H 1.09004 * 110.62554 * 313.17967 * 19 17 16 43 43 H 1.09002 * 110.62580 * 241.51076 * 20 19 17 44 44 H 1.08994 * 110.62803 * 118.49414 * 20 19 17 45 45 H 0.96999 * 120.00388 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.6906 -1.1573 5 6 4.4646 0.7816 -1.3100 6 7 5.2666 0.2437 -0.4069 7 6 6.5793 0.3093 -0.5160 8 6 7.1781 0.9476 -1.5876 9 6 6.3866 1.5234 -2.5653 10 6 4.9958 1.4462 -2.4254 11 6 4.1050 2.0477 -3.4358 12 8 2.8986 1.9700 -3.3061 13 7 4.6284 2.6885 -4.4997 14 6 3.7438 3.2863 -5.5028 15 1 2.8604 3.7135 -5.0283 16 6 4.4984 4.3597 -6.3253 17 6 4.4429 3.8060 -7.7810 18 1 4.5923 4.5347 -8.5777 19 6 5.4185 2.5907 -7.7896 20 6 4.6639 1.5174 -6.9672 21 6 3.3351 2.2303 -6.5736 22 1 2.5044 1.5799 -6.2998 23 7 3.1128 3.1074 -7.7730 24 6 2.0311 3.2315 -8.6033 25 1 1.1488 2.6321 -8.4342 26 6 2.0685 4.1280 -9.6625 27 7 3.1438 4.8583 -9.8690 28 14 0.5925 4.2979 -10.7949 29 1 -0.3192 5.3440 -10.2662 30 1 1.0526 4.6828 -12.1533 31 1 -0.1290 3.0020 -10.8654 32 1 -1.0501 0.0000 0.0003 33 1 3.0098 -1.0267 -0.0143 34 1 3.0091 0.5023 0.8970 35 1 7.1980 -0.1433 0.2447 36 1 8.2545 0.9922 -1.6624 37 1 6.8305 2.0235 -3.4133 38 1 5.5909 2.7538 -4.6013 39 1 3.9891 5.3212 -6.2606 40 1 5.5309 4.4469 -5.9871 41 1 5.5902 2.2433 -8.8084 42 1 6.3619 2.8523 -7.3103 43 1 5.2321 1.2457 -6.0775 44 1 4.4615 0.6377 -7.5781 45 1 3.1699 5.4850 -10.6089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096375735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = 83.295827 kcal Electronic energy + Delta-G solvation = -29543.996633 eV Core-core repulsion = 25530.696267 eV Total energy + Delta-G solvation = -4013.300366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11218 -39.75946 -38.32888 -38.00553 -34.05267 -33.57526 -32.90577 -32.16422 -30.91105 -29.27661 -29.00304 -27.82490 -27.35677 -24.88681 -24.04360 -23.24780 -21.47360 -20.77589 -19.51740 -18.95027 -18.74690 -18.43465 -17.59767 -17.01641 -16.76368 -16.47372 -15.44133 -15.33742 -14.97678 -14.77821 -14.59575 -14.35830 -14.23916 -13.92366 -13.51274 -13.26851 -13.12365 -12.46579 -12.30732 -12.21732 -11.99276 -11.75372 -11.48154 -11.03700 -10.90783 -10.88886 -10.87759 -10.81996 -10.34663 -10.22336 -10.20232 -10.18334 -10.07586 -9.82495 -9.54316 -9.35590 -9.22256 -8.91950 -8.79980 -8.43908 -6.89760 -5.71419 -3.09023 0.48008 0.95694 2.05250 2.61880 2.96552 3.27281 3.39109 3.41990 3.46633 3.48373 3.72128 3.98482 4.17288 4.46462 4.46871 4.59451 4.76518 4.91613 5.11071 5.13318 5.20664 5.22418 5.40044 5.52930 5.59825 5.68545 5.75474 5.82873 5.86873 5.97896 6.02913 6.08754 6.12353 6.31711 6.35248 6.54882 6.61731 6.69920 6.83957 6.96946 7.00018 7.02461 7.28489 7.37242 7.45045 7.54481 7.75785 7.86648 8.18269 8.54028 9.12206 9.74632 10.55057 11.38332 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.003009 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.351324 B = 9303.492994 C =10888.652078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.201 4.201 3 C 0.180 3.820 4 O -0.262 6.262 5 C 0.372 3.628 6 N -0.548 5.548 7 C 0.161 3.839 8 C -0.219 4.219 9 C -0.009 4.009 10 C -0.199 4.199 11 C 0.555 3.445 12 O -0.514 6.514 13 N -0.709 5.709 14 C 0.130 3.870 15 H 0.083 0.917 16 C -0.140 4.140 17 C 0.154 3.846 18 H 0.155 0.845 19 C -0.137 4.137 20 C -0.130 4.130 21 C 0.129 3.871 22 H 0.086 0.914 23 N -0.590 5.590 24 C -0.208 4.208 25 H 0.079 0.921 26 C -0.013 4.013 27 N -0.924 5.924 28 Si 0.916 3.084 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.224 0.776 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.391 0.609 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.078 -7.962 19.332 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.201 4.201 3 C 0.105 3.895 4 O -0.166 6.166 5 C 0.192 3.808 6 N -0.272 5.272 7 C 0.005 3.995 8 C -0.239 4.239 9 C -0.035 4.035 10 C -0.205 4.205 11 C 0.340 3.660 12 O -0.390 6.390 13 N -0.361 5.361 14 C 0.024 3.976 15 H 0.101 0.899 16 C -0.180 4.180 17 C 0.047 3.953 18 H 0.172 0.828 19 C -0.176 4.176 20 C -0.169 4.169 21 C 0.020 3.980 22 H 0.104 0.896 23 N -0.310 5.310 24 C -0.337 4.337 25 H 0.097 0.903 26 C -0.208 4.208 27 N -0.573 5.573 28 Si 0.747 3.253 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.241 0.759 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.226 0.774 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.361 -8.205 19.670 22.894 hybrid contribution 0.116 0.342 -1.053 1.113 sum 8.476 -7.863 18.618 21.916 Atomic orbital electron populations 1.24996 0.95847 0.99276 0.97338 1.22282 0.93604 1.01641 1.02533 1.19125 0.84471 0.97988 0.87876 1.86605 1.15953 1.70702 1.43359 1.19758 0.84101 0.88369 0.88580 1.67463 1.06760 1.23736 1.29274 1.22624 0.89064 0.92108 0.95741 1.21931 1.01741 1.03592 0.96638 1.21696 0.91183 0.93071 0.97589 1.20211 0.94368 1.07900 0.98012 1.17743 0.87821 0.79203 0.81235 1.90855 1.14073 1.57997 1.76086 1.46122 1.09928 1.56487 1.23535 1.22646 0.92509 0.95038 0.87397 0.89892 1.23284 0.97680 0.97708 0.99299 1.23769 0.83473 0.93776 0.94287 0.82832 1.23055 0.97175 0.98478 0.98931 1.22896 0.97762 0.98064 0.98220 1.23197 0.94834 0.92157 0.87843 0.89639 1.46486 1.13266 1.43112 1.28177 1.19074 0.92080 1.17961 1.04536 0.90306 1.24687 0.97893 0.99110 0.99073 1.69426 1.27239 1.28355 1.32247 0.86030 0.81559 0.77771 0.79919 1.21653 1.21709 1.20761 0.75904 0.89156 0.89190 0.81855 0.83835 0.83662 0.77401 0.91529 0.92779 0.92672 0.93708 0.93171 0.93085 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.20 -2.57 13.73 -37.13 -0.51 -3.08 16 3 C 0.18 2.15 5.78 34.37 0.20 2.35 16 4 O -0.26 -4.06 8.18 -39.76 -0.33 -4.39 16 5 C 0.37 5.09 7.51 -16.62 -0.12 4.97 16 6 N -0.55 -6.05 9.21 -12.98 -0.12 -6.17 16 7 C 0.16 1.25 11.17 -17.48 -0.20 1.06 16 8 C -0.22 -1.54 10.09 -39.50 -0.40 -1.94 16 9 C -0.01 -0.09 9.64 -38.88 -0.37 -0.46 16 10 C -0.20 -2.64 5.90 -104.69 -0.62 -3.25 16 11 C 0.55 9.20 7.77 -12.47 -0.10 9.10 16 12 O -0.51 -10.75 14.92 -16.48 -0.25 -10.99 16 13 N -0.71 -10.73 3.59 -52.44 -0.19 -10.91 16 14 C 0.13 2.46 3.08 -65.44 -0.20 2.26 16 15 H 0.08 1.78 7.69 -51.93 -0.40 1.39 16 16 C -0.14 -2.63 6.20 -24.24 -0.15 -2.78 16 17 C 0.15 3.44 4.72 -62.80 -0.30 3.14 16 18 H 0.15 3.93 5.52 -51.93 -0.29 3.64 16 19 C -0.14 -2.61 6.44 -24.24 -0.16 -2.76 16 20 C -0.13 -2.42 6.33 -24.24 -0.15 -2.57 16 21 C 0.13 2.75 5.35 -62.80 -0.34 2.42 16 22 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 23 N -0.59 -14.80 2.99 -145.82 -0.44 -15.24 16 24 C -0.21 -5.80 10.59 -15.06 -0.16 -5.96 16 25 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 26 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 27 N -0.92 -26.19 10.46 55.49 0.58 -25.61 16 28 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 32 H 0.22 1.58 7.80 -54.08 -0.42 1.16 16 33 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.15 0.97 6.51 -52.49 -0.34 0.63 16 38 H 0.39 4.66 6.12 -40.82 -0.25 4.41 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 0.84 7.34 -51.93 -0.38 0.45 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 43 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -34.34 375.56 -8.94 -43.28 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.75 Total: 6.36 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.10 Total: 0.86 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.16 Total: -57.93 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.57 Total: -15.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.34 -8.94 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096375735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.575 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds