Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48499 * 109.46964 * 270.00279 * 3 2 1 5 5 H 1.48502 * 109.46799 * 29.99984 * 3 2 1 6 6 H 1.48495 * 109.47300 * 150.00147 * 3 2 1 7 7 C 1.38954 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47473 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00376 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99593 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00115 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.46783 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46632 * 179.97438 * 20 19 17 22 22 H 1.08998 * 110.53105 * 54.30183 * 21 20 19 23 23 N 1.47314 * 110.60314 * 291.47205 * 21 20 19 24 24 C 1.34863 * 106.43682 * 241.52744 * 23 21 20 25 25 O 1.21537 * 123.72318 * 179.97438 * 24 23 21 26 26 N 1.33788 * 112.50222 * 359.85542 * 24 23 21 27 27 C 1.34764 * 111.64402 * 0.09809 * 26 24 23 28 28 O 1.21235 * 127.15620 * 179.97438 * 27 26 24 29 29 H 0.96998 * 120.00361 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 32 32 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 33 33 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 34 34 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 35 35 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 36 36 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 38 38 H 0.97004 * 119.99396 * 0.02562 * 16 15 14 39 39 H 1.09002 * 109.46793 * 299.99519 * 19 17 16 40 40 H 1.08992 * 109.46831 * 59.99969 * 19 17 16 41 41 H 1.08992 * 109.47457 * 299.99923 * 20 19 17 42 42 H 1.09001 * 109.46962 * 59.99990 * 20 19 17 43 43 H 0.96997 * 126.68930 * 61.44025 * 23 21 20 44 44 H 0.96997 * 124.17752 * 180.12753 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4983 -7.2708 -0.0015 15 6 2.5232 -8.4068 -0.0014 16 7 1.8249 -9.6946 -0.0019 17 6 2.5296 -10.8434 -0.0013 18 8 3.7421 -10.8110 0.0001 19 6 1.8113 -12.1682 -0.0025 20 6 2.8363 -13.3041 -0.0022 21 6 2.1069 -14.6491 -0.0027 22 1 1.4015 -14.7011 -0.8320 23 7 1.4155 -14.8643 1.2802 24 6 1.9612 -15.9698 1.8270 25 8 1.6192 -16.4322 2.8976 26 7 2.9185 -16.5019 1.0587 27 6 3.0985 -15.7934 -0.0734 28 8 3.8892 -16.0232 -0.9632 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8887 33 1 2.8329 -5.9123 0.7814 34 1 0.8724 -7.3455 0.8878 35 1 0.8743 -7.3450 -0.8922 36 1 3.1487 -8.3319 -0.8909 37 1 3.1475 -8.3328 0.8890 38 1 0.8552 -9.7205 -0.0027 39 1 1.1854 -12.2428 0.8868 40 1 1.1875 -12.2424 -0.8931 41 1 3.4618 -13.2293 -0.8916 42 1 3.4605 -13.2300 0.8883 43 1 0.7086 -14.3171 1.6565 44 1 3.4208 -17.2995 1.2880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150398767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -123.130928 kcal Electronic energy + Delta-G solvation = -27481.251213 eV Core-core repulsion = 23048.150247 eV Total energy + Delta-G solvation = -4433.100965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.93392 -40.09301 -39.19539 -38.36965 -37.07808 -36.41651 -35.18198 -34.45905 -33.79420 -32.84057 -31.27569 -29.84453 -28.25005 -26.08163 -24.41541 -23.70937 -23.18512 -22.19530 -21.93233 -20.65869 -19.32389 -18.97776 -17.95989 -17.62377 -17.60546 -17.17025 -16.50132 -16.39970 -16.31440 -16.06730 -15.91836 -15.69111 -14.98220 -14.75550 -14.69106 -14.43935 -14.16147 -14.01657 -13.61035 -13.41540 -13.30398 -13.06709 -12.63702 -12.44619 -11.97786 -11.79845 -11.60872 -11.56418 -11.51531 -11.47960 -11.05916 -10.98474 -10.88563 -10.41571 -10.27022 -10.23881 -10.16714 -9.54387 -9.38103 -8.55231 -8.18394 -8.00099 -6.45191 -3.86054 0.96734 1.78972 2.27380 2.39479 2.46780 2.73588 3.16008 3.24988 3.30790 3.31417 3.85103 3.87194 4.07986 4.11442 4.23629 4.35081 4.49597 4.57907 4.70960 4.78643 4.87675 4.94250 5.12457 5.22168 5.23933 5.30636 5.41491 5.48385 5.66573 5.74652 5.83214 5.88861 6.07239 6.09691 6.20730 6.27204 6.75476 7.02455 7.13437 7.50610 7.51448 7.52302 7.86310 8.02510 8.57221 9.14438 9.50008 10.01275 10.72465 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038840 B = 0.001243 C = 0.001225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.734048 B =22517.956303 C =22845.648686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.119 3.881 16 N -0.728 5.728 17 C 0.511 3.489 18 O -0.535 6.535 19 C -0.139 4.139 20 C -0.106 4.106 21 C 0.092 3.908 22 H 0.134 0.866 23 N -0.723 5.723 24 C 0.705 3.295 25 O -0.542 6.542 26 N -0.680 5.680 27 C 0.530 3.470 28 O -0.460 6.460 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.353 0.647 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.442 0.558 44 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -31.117 0.368 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.005 4.005 16 N -0.380 5.380 17 C 0.297 3.703 18 O -0.411 6.411 19 C -0.179 4.179 20 C -0.145 4.145 21 C -0.017 4.017 22 H 0.151 0.849 23 N -0.389 5.389 24 C 0.404 3.596 25 O -0.415 6.415 26 N -0.351 5.351 27 C 0.315 3.685 28 O -0.328 6.328 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.172 0.828 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.287 0.713 44 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -2.945 -31.196 -0.262 31.335 hybrid contribution -1.281 0.785 1.147 1.890 sum -4.227 -30.411 0.885 30.716 Atomic orbital electron populations 1.69605 1.05956 1.28206 1.50536 1.25261 0.95632 0.99740 0.97221 0.85850 0.79236 0.80726 0.78445 1.20352 1.20926 1.19396 1.19718 0.93422 0.82211 1.47657 0.87869 1.41852 1.09188 1.04590 1.64285 1.19769 0.88401 0.84693 0.84710 1.90536 1.13723 1.87007 1.55350 1.21667 0.94194 0.90813 1.01317 1.59922 1.18912 0.99454 1.51633 1.22076 0.95522 0.89460 1.00987 1.21308 0.94996 0.80670 1.03539 1.45924 1.10372 1.06041 1.75710 1.20475 0.88028 0.85534 0.76298 1.90773 1.13915 1.87610 1.48781 1.21629 0.99266 0.92102 1.04920 1.21572 0.97635 0.88924 1.06362 1.22191 0.94824 0.95655 0.89037 0.84904 1.45666 1.41717 1.29469 1.22065 1.15933 0.79336 0.81072 0.83279 1.91084 1.65014 1.65207 1.20238 1.44323 1.38050 1.30902 1.21841 1.20737 0.83213 0.83521 0.81054 1.90890 1.35453 1.70545 1.35885 0.91850 0.77462 0.89455 0.93720 0.82765 0.94951 0.90461 0.90069 0.91306 0.76577 0.88695 0.87963 0.87981 0.89552 0.71322 0.72350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 11 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -9.95 6.12 -115.06 -0.70 -10.65 16 14 C 0.05 0.50 5.80 -3.83 -0.02 0.48 16 15 C 0.12 1.17 5.93 -4.04 -0.02 1.15 16 16 N -0.73 -4.92 5.56 -60.29 -0.33 -5.25 16 17 C 0.51 3.97 7.83 -10.98 -0.09 3.88 16 18 O -0.53 -6.80 15.98 5.55 0.09 -6.71 16 19 C -0.14 -0.38 5.62 -27.88 -0.16 -0.53 16 20 C -0.11 -0.43 4.26 -26.73 -0.11 -0.54 16 21 C 0.09 0.23 3.65 -68.21 -0.25 -0.02 16 22 H 0.13 -0.01 8.14 -51.93 -0.42 -0.43 16 23 N -0.72 -1.93 6.04 -59.10 -0.36 -2.29 16 24 C 0.70 4.20 9.00 -87.72 -0.79 3.41 16 25 O -0.54 -5.45 18.04 5.33 0.10 -5.35 16 26 N -0.68 -3.11 5.70 -15.71 -0.09 -3.20 16 27 C 0.53 2.76 8.14 -10.56 -0.09 2.67 16 28 O -0.46 -3.93 18.02 5.60 0.10 -3.83 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.35 5.51 8.43 -39.29 -0.33 5.18 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 1.40 8.47 -40.82 -0.35 1.05 16 39 H 0.09 0.05 7.54 -51.93 -0.39 -0.35 16 40 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 41 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 43 H 0.44 0.30 8.51 -40.82 -0.35 -0.05 16 44 H 0.43 1.37 8.96 -40.82 -0.37 1.00 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -38.56 386.49 -7.37 -45.93 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.84 Total: 9.26 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -1.88 Total: 13.43 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.82 Total: -58.80 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: 0.37 Total: -31.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.56 -7.37 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150398767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.205 kcal (2) G-P(sol) polarization free energy of solvation -38.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds