Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46949 * 2 1 4 4 C 1.53001 * 109.47004 * 239.99396 * 2 1 3 5 5 C 1.53007 * 109.46693 * 175.00187 * 4 2 1 6 6 C 1.50697 * 109.47073 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99871 * 359.71760 * 6 5 4 8 8 C 1.37878 * 119.99815 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99654 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00121 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46950 * 90.00574 * 10 8 6 12 12 H 1.48502 * 109.47017 * 210.00358 * 10 8 6 13 13 H 1.48499 * 109.46993 * 330.00460 * 10 8 6 14 14 N 1.46899 * 109.46807 * 119.99355 * 2 1 3 15 15 C 1.46899 * 111.00351 * 277.08949 * 14 2 1 16 16 H 1.08996 * 109.46930 * 34.11275 * 15 14 2 17 17 C 1.53005 * 109.47217 * 154.11606 * 15 14 2 18 18 O 1.42899 * 109.47221 * 64.48752 * 17 15 14 19 19 C 1.50702 * 109.46721 * 274.11473 * 15 14 2 20 20 C 1.38252 * 120.00148 * 319.99361 * 19 15 14 21 21 C 1.38218 * 120.00032 * 179.97438 * 20 19 15 22 22 C 1.38262 * 119.99786 * 0.02562 * 21 20 19 23 23 C 1.38211 * 120.00243 * 0.02562 * 22 21 20 24 24 S 1.76187 * 120.00146 * 180.02562 * 23 22 21 25 25 C 1.81404 * 104.45222 * 89.99835 * 24 23 22 26 26 O 1.42104 * 104.28076 * 206.06910 * 24 23 22 27 27 O 1.42104 * 104.27886 * 333.92460 * 24 23 22 28 28 C 1.38219 * 119.99803 * 139.72626 * 19 15 14 29 29 H 1.08998 * 109.46636 * 65.19813 * 1 2 3 30 30 H 1.09000 * 109.46852 * 185.19248 * 1 2 3 31 31 H 1.08996 * 109.46993 * 305.19154 * 1 2 3 32 32 H 1.08995 * 109.47350 * 55.00602 * 4 2 1 33 33 H 1.08990 * 109.47586 * 294.99580 * 4 2 1 34 34 H 1.08997 * 109.47548 * 59.99789 * 5 4 2 35 35 H 1.09001 * 109.47113 * 300.00037 * 5 4 2 36 36 H 0.97004 * 119.99757 * 179.97438 * 9 8 6 37 37 H 1.00900 * 110.99645 * 153.13091 * 14 2 1 38 38 H 1.09001 * 109.46496 * 184.49161 * 17 15 14 39 39 H 1.08994 * 109.46830 * 304.48490 * 17 15 14 40 40 H 0.96696 * 113.99679 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.00124 * 0.02562 * 20 19 15 42 42 H 1.07994 * 120.00112 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99784 * 180.02562 * 22 21 20 44 44 H 1.08990 * 109.46989 * 60.00312 * 25 24 23 45 45 H 1.09002 * 109.46959 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.46774 * 299.99531 * 25 24 23 47 47 H 1.08001 * 119.99867 * 359.97438 * 28 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 6 4.0673 -1.3234 -2.5442 7 1 3.3692 -1.8075 -3.2111 8 6 5.4186 -1.3603 -2.8154 9 7 5.8570 -1.9804 -3.8892 10 14 6.6267 -0.5298 -1.6577 11 1 7.0614 -1.4974 -0.6185 12 1 7.8090 -0.0646 -2.4265 13 1 5.9700 0.6328 -1.0079 14 7 2.0197 -0.6924 1.1995 15 6 2.0356 0.2099 2.3586 16 1 1.2001 0.9064 2.2884 17 6 1.9098 -0.6095 3.6446 18 8 3.0579 -1.4479 3.7894 19 6 3.3310 0.9797 2.3781 20 6 4.5159 0.3474 2.0503 21 6 5.7039 1.0536 2.0677 22 6 5.7074 2.3923 2.4134 23 6 4.5230 3.0242 2.7422 24 16 4.5273 4.7302 3.1822 25 6 4.2928 5.6039 1.6098 26 8 3.3835 4.8812 4.0118 27 8 5.8351 4.9581 3.6891 28 6 3.3337 2.3194 2.7184 29 1 -0.3632 0.4311 -0.9329 30 1 -0.3633 -1.0235 0.0930 31 1 -0.3633 0.5922 0.8398 32 1 1.6055 -0.2619 -2.1369 33 1 1.7518 -1.7716 -1.2055 34 1 3.9996 -1.0728 -0.4258 35 1 3.8533 0.4368 -1.3573 36 1 6.8077 -2.0061 -4.0802 37 1 2.9324 -1.0915 1.0394 38 1 1.8414 0.0638 4.4991 39 1 1.0129 -1.2268 3.5958 40 1 3.0461 -1.9969 4.5853 41 1 4.5132 -0.6982 1.7798 42 1 6.6295 0.5597 1.8112 43 1 6.6356 2.9441 2.4266 44 1 3.3455 5.3011 1.1638 45 1 4.2831 6.6789 1.7894 46 1 5.1094 5.3566 0.9315 47 1 2.4074 2.8145 2.9700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = -97.447020 kcal Electronic energy + Delta-G solvation = -28974.367174 eV Core-core repulsion = 25056.380410 eV Total energy + Delta-G solvation = -3917.986764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.96895 -37.59185 -37.28183 -36.36913 -36.12883 -33.71474 -32.51344 -31.37443 -30.40315 -29.76356 -29.27179 -27.59824 -25.27896 -23.65351 -23.06984 -21.35745 -20.80409 -19.72839 -18.92995 -17.98788 -17.39933 -16.83652 -16.42427 -16.17297 -16.08678 -15.63063 -15.38479 -14.76084 -14.55036 -14.35545 -14.13016 -13.74001 -13.59404 -13.47062 -13.35870 -12.96299 -12.79046 -12.56426 -12.40867 -12.32901 -12.27924 -12.14934 -11.97688 -11.80744 -11.54503 -11.31850 -11.30418 -11.20263 -10.99024 -10.70232 -10.57881 -10.05816 -9.98150 -9.83601 -9.50677 -9.31387 -9.21690 -8.89791 -8.59654 -8.26019 -6.09416 -4.07303 -0.14371 0.82848 1.23593 2.66850 3.22302 3.30285 3.32304 3.36099 3.77110 3.90642 4.24896 4.26616 4.38622 4.49745 4.52015 4.72821 4.78269 4.97799 5.07001 5.20133 5.24558 5.29821 5.35321 5.37193 5.38114 5.44580 5.59694 5.64641 5.70801 5.78883 5.86159 5.94105 6.04609 6.16912 6.23167 6.34535 6.36196 6.45408 6.66556 6.78096 6.81237 7.19530 7.21160 7.42272 7.62461 7.66213 7.74297 8.49212 8.96264 9.52951 11.04074 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.004563 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.616094 B = 6134.676457 C = 7490.232542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.012 4.012 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.261 1.261 14 N -0.672 5.672 15 C 0.125 3.875 16 H 0.098 0.902 17 C 0.092 3.908 18 O -0.565 6.565 19 C -0.125 4.125 20 C -0.028 4.028 21 C -0.136 4.136 22 C -0.026 4.026 23 C -0.664 4.664 24 S 2.502 3.498 25 C -0.651 4.651 26 O -0.941 6.941 27 O -0.941 6.941 28 C -0.023 4.023 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.007 0.993 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.356 0.644 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.375 0.625 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.656 11.280 15.757 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.049 4.049 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 N -0.307 5.307 15 C 0.014 3.986 16 H 0.116 0.884 17 C 0.014 3.986 18 O -0.369 6.369 19 C -0.128 4.128 20 C -0.046 4.046 21 C -0.155 4.155 22 C -0.045 4.045 23 C -0.751 4.751 24 S 2.682 3.318 25 C -0.800 4.800 26 O -0.939 6.939 27 O -0.938 6.938 28 C -0.043 4.043 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.180 0.820 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.222 0.778 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.851 11.574 16.036 20.930 hybrid contribution 1.394 0.152 -0.076 1.404 sum -5.458 11.727 15.960 20.543 Atomic orbital electron populations 1.21813 0.95273 1.02011 1.00438 1.21714 0.94901 0.96169 0.90581 0.94380 1.21651 0.98107 1.00161 0.94479 1.19590 0.91884 0.96409 0.97009 1.21119 0.92906 1.34119 1.07459 0.90984 1.25026 0.98372 0.94908 0.95051 1.69912 1.14586 1.43378 1.26251 0.86923 0.81071 0.80781 0.81560 1.20086 1.21429 1.18564 1.60814 1.33950 1.32597 1.03352 1.20749 0.93351 0.92582 0.91899 0.88422 1.22183 0.88585 0.92556 0.95318 1.86517 1.43412 1.58733 1.48276 1.20715 0.96909 0.94295 1.00853 1.21353 0.91746 1.00216 0.91301 1.21325 0.98870 0.94596 1.00738 1.20886 0.96357 0.95196 0.92085 1.30318 0.99812 1.24675 1.20295 1.05014 0.74642 0.75056 0.77069 1.30226 1.12684 1.14250 1.22889 1.93569 1.51550 1.85669 1.63088 1.93576 1.38569 1.84861 1.76838 1.20745 0.96338 0.93960 0.93233 0.92671 0.92010 0.93813 0.92028 0.91797 0.97517 0.97071 0.92753 0.81986 0.93768 0.92385 0.77832 0.84719 0.85234 0.84371 0.84859 0.85118 0.84834 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.34 37.16 0.35 -1.41 16 2 C 0.08 1.16 2.47 -67.71 -0.17 1.00 16 3 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 4 C -0.11 -2.02 4.76 -26.73 -0.13 -2.15 16 5 C -0.01 -0.26 3.86 -27.88 -0.11 -0.37 16 6 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 10 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 14 N -0.67 -9.99 5.98 -100.95 -0.60 -10.59 16 15 C 0.13 1.57 2.48 -68.86 -0.17 1.40 16 16 H 0.10 1.08 6.87 -51.93 -0.36 0.72 16 17 C 0.09 0.99 6.87 37.16 0.26 1.24 16 18 O -0.56 -6.53 12.05 -35.23 -0.42 -6.95 16 19 C -0.13 -1.73 4.53 -104.62 -0.47 -2.21 16 20 C -0.03 -0.43 8.11 -39.58 -0.32 -0.75 16 21 C -0.14 -2.04 10.05 -39.58 -0.40 -2.43 16 22 C -0.03 -0.35 9.47 -39.58 -0.37 -0.72 16 23 C -0.66 -8.18 5.65 -39.58 -0.22 -8.41 16 24 S 2.50 25.40 5.80 -107.50 -0.62 24.78 16 25 C -0.65 -4.24 10.80 101.05 1.09 -3.15 16 26 O -0.94 -11.87 17.14 -57.54 -0.99 -12.85 16 27 O -0.94 -12.27 17.13 -57.54 -0.99 -13.26 16 28 C -0.02 -0.29 9.09 -39.58 -0.36 -0.65 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.01 0.15 5.52 -51.93 -0.29 -0.13 16 35 H 0.01 0.26 7.20 -51.93 -0.37 -0.12 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.36 6.01 4.11 -39.29 -0.16 5.85 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.38 2.70 9.12 45.56 0.42 3.12 16 41 H 0.14 2.21 5.94 -52.49 -0.31 1.90 16 42 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.14 1.55 7.57 -52.49 -0.40 1.16 16 44 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.14 1.41 7.56 -52.49 -0.40 1.01 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -36.38 389.47 -9.57 -45.95 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.46 Total: 9.08 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: -1.46 Total: -31.57 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.17 Total: -37.41 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -2.40 Total: -33.06 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 25.40 SS G_CDS: -0.62 Total: 24.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.38 -9.57 -45.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.497 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds